Specific RecA amino acid changes affect RecA–UmuD′C interaction

The UmuD′C mutagenesis complex accumulates slowly and parsimoniously after a 12 J m−2 UV flash to attain after 45 min a low cell concentration between 15 and 60 complexes. Meanwhile, RecA monomers go up to 72 000 monomers. By contrast, when the UmuD′C complex is constitutively produced at a high concentration, it inhibits recombinational repair and then markedly reduces bacterial survival from DNA damage. We have isolated novel recA mutations that enable RecA to resist UmuD′C recombination inhibition. The mutations, named recA [UmuR], are located on the RecA three‐dimensional structure at three sites: (i) the RecA monomer tail domain (four amino acid changes); (ii) the RecA monomer head domain (one amino acid change, which appears to interface with the amino acids in the tail domain); and (iii) in the core of a RecA monomer (one amino acid change). RecA [UmuR] proteins make recombination more efficient in the presence of UmuD′C while SOS mutagenesis is inhibited. The UmuR amino acid changes are located at a head‐tail joint between RecA monomers and some are free to possibly interact with UmuD′C at the tip of a RecA polymer. These two RecA structures may constitute possible sites to which the UmuD′C complex might bind, hampering homologous recombination and favouring SOS mutagenesis.

[1]  M. Dutreix,et al.  In vitro inhibition of RecA-mediated homologous pairing by UmuD'C proteins. , 1995, Biochimie.

[2]  S. West Enzymes and molecular mechanisms of genetic recombination. , 1992, Annual review of biochemistry.

[3]  M. Cox,et al.  RecA protein filaments: end-dependent dissociation from ssDNA and stabilization by RecO and RecR proteins. , 1997, Journal of molecular biology.

[4]  S. Cotterill The recA protein of Escherichia coli , 1983 .

[5]  M. Cox,et al.  RecA protein: structure, function, and role in recombinational DNA repair. , 1997, Progress in nucleic acid research and molecular biology.

[6]  Stanley N Cohen,et al.  Replication control in a composite plasmid constructed by in vitro linkage of two distinct replicons , 1976, Nature.

[7]  J. Courcelle,et al.  Kinetics of pyrimidine(6-4)pyrimidone photoproduct repair in Escherichia coli , 1996, Journal of bacteriology.

[8]  S. Kowalczykowski,et al.  Biochemistry of homologous recombination in Escherichia coli. , 1994, Microbiological reviews.

[9]  K. McEntee,et al.  "Activated"-RecA protein affinity chromatography of LexA repressor and other SOS-regulated proteins. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[10]  T. Horii,et al.  Organization of the recA gene of Escherichia coli. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[11]  P. Jonczyk,et al.  Overproduction of the epsilon subunit of DNA polymerase III counteracts the SOS mutagenic response of Escherichia coli. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[12]  E. G. Frank,et al.  Structure of the UmuD′ protein and its regulation in response to DNA damage , 1996, Nature.

[13]  G. Walker,et al.  New phenotypes associated with mucAB: alteration of a MucA sequence homologous to the LexA cleavage site , 1987, Journal of bacteriology.

[14]  D. Belin,et al.  A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors. , 1984, Gene.

[15]  J. Knežević,et al.  Substitution of UmuD' for UmuD does not affect SOS mutagenesis. , 1991, Biochimie.

[16]  F. Galibert,et al.  New recA mutations that dissociate the various RecA protein activities in Escherichia coli provide evidence for an additional role for RecA protein in UV mutagenesis , 1989, Journal of bacteriology.

[17]  R. Woodgate,et al.  Mutagenesis induced by bacterial UmuDC proteins and their plasmid homologues , 1992, Molecular microbiology.

[18]  E. Witkin Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. , 1976, Bacteriological reviews.

[19]  S. Sommer,et al.  The appearance of the UmuD'C protein complex in Escherichia coli switches repair from homologous recombination to SOS mutagenesis , 1993, Molecular microbiology.

[20]  H. Echols,et al.  Differential recognition of ultraviolet lesions by RecA protein. Possible mechanism for preferential targeting of SOS mutagenesis to (6-4) dipyrimidine sites. , 1990, The Journal of biological chemistry.

[21]  J. W. Little The SOS Regulatory System , 1996 .

[22]  M. Madiraju,et al.  Preferential binding of Escherichia coli RecF protein to gapped DNA in the presence of adenosine (gamma-thio) triphosphate , 1996, Journal of bacteriology.

[23]  E. Egelman What do X-ray crystallographic and electron microscopic structural studies of the RecA protein tell us about recombination? , 1993 .

[24]  V. Iyer,et al.  Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions. , 1971, Biochimica et biophysica acta.

[25]  E. G. Frank,et al.  In vivo stability of the Umu mutagenesis proteins: a major role for RecA , 1996, Journal of bacteriology.

[26]  R. Woodgate,et al.  Mutagenic repair in Escherichia coli: products of the recA gene and of the umuD and umuC genes act at different steps in UV-induced mutagenesis. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[27]  H. Echols,et al.  Mutation induced by DNA damage: a many protein affair. , 1990, Mutation research.

[28]  R. Woodgate Construction of a umuDC operon substitution mutation in Escherichia coli. , 1992, Mutation research.

[29]  J. Register,et al.  The direction of RecA protein assembly onto single strand DNA is the same as the direction of strand assimilation during strand exchange. , 1985, The Journal of biological chemistry.

[30]  R. Setlow,et al.  THE DISAPPEARANCE OF THYMINE DIMERS FROM DNA: AN ERROR-CORRECTING MECHANISM. , 1964, Proceedings of the National Academy of Sciences of the United States of America.

[31]  B. Bridges,et al.  Mutagenic DNA repair in Escherichia coli. XVIII. Involvement of DNA polymerase III alpha-subunit (DnaE protein) in mutagenesis after exposure to UV light. , 1990, Mutagenesis.

[32]  R. Woodgate,et al.  Damage inducible mutagenesis: recent insights into the activities of the Umu family of mutagenesis proteins. , 1996, Cancer surveys.

[33]  E. G. Frank,et al.  Targeting of the UmuD, UmuD', and MucA' mutagenesis proteins to DNA by RecA protein. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[34]  S. Karlin,et al.  Evolutionary conservation of RecA genes in relation to protein structure and function , 1996, Journal of bacteriology.

[35]  P Howard-Flanders,et al.  DNA repair and genetic recombination: studies on mutants of Escherichia coli defective in these processes. , 1966, Radiation research.

[36]  Irene T. Weber,et al.  The structure of the E. coli recA protein monomer and polymer , 1992, Nature.

[37]  B. Bachmann,et al.  Pedigrees of some mutant strains of Escherichia coli K-12. , 1972, Bacteriological reviews.

[38]  M. Dutreix,et al.  A RecA protein mutant deficient in its interaction with the UmuDC complex. , 1991, Biochimie.

[39]  T. Paz-Elizur,et al.  A Smaller Form of the Sliding Clamp Subunit of DNA Polymerase III Is Induced by UV Irradiation in Escherichia coli(*) , 1996, The Journal of Biological Chemistry.

[40]  H. Echols,et al.  Sequential folding of UmuC by the Hsp70 and Hsp60 chaperone complexes of Escherichia coli. , 1994, The Journal of biological chemistry.

[41]  J. W. Little LexA cleavage and other self-processing reactions , 1993, Journal of bacteriology.

[42]  G. Weinstock,et al.  Mutations at the cysteine codons of the recA gene of Escherichia coli. , 1988, DNA.

[43]  J. Battista,et al.  Dominant negative umuD mutations decreasing RecA-mediated cleavage suggest roles for intact UmuD in modulation of SOS mutagenesis. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[44]  J. Sweasy,et al.  Recovery from ultraviolet light-induced inhibition of DNA synthesis requires umuDC gene products in recA718 mutant strains but not in recA+ strains of Escherichia coli. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[45]  H. Echols,et al.  RecA protein and SOS. Correlation of mutagenesis phenotype with binding of mutant RecA proteins to duplex DNA and LexA cleavage. , 1987, Journal of molecular biology.

[46]  M. O’Donnell,et al.  Activity of the purified mutagenesis proteins UmuC, UmuD', and RecA in replicative bypass of an abasic DNA lesion by DNA polymerase III. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[47]  A. Dri,et al.  Inhibition of cell division in hupA hupB mutant bacteria lacking HU protein , 1991, Journal of bacteriology.

[48]  P. Howard-Flanders,et al.  Discontinuities in the DNA synthesized in an excision-defective strain of Escherichia coli following ultraviolet irradiation. , 1968, Journal of molecular biology.

[49]  R. Woodgate,et al.  UmuC mutagenesis protein of Escherichia coli: purification and interaction with UmuD and UmuD'. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[50]  D. Mount,et al.  The SOS regulatory system of Escherichia coli , 1982, Cell.

[51]  M. Radman,et al.  SOS repair hypothesis: phenomenology of an inducible DNA repair which is accompanied by mutagenesis. , 1975, Basic life sciences.

[52]  K. McEntee,et al.  Purification of a Soluble UmuD′C Complex from Escherichia coli , 1996, The Journal of Biological Chemistry.

[53]  E. G. Frank,et al.  Regulation of SOS mutagenesis by proteolysis. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[54]  M. Campbell,et al.  Quantitation of the inhibition of Hfr x F- recombination by the mutagenesis complex UmuD'C. , 1997, Journal of molecular biology.

[55]  M. Cox,et al.  Recombinational DNA Repair: The RecF and RecR Proteins Limit the Extension of RecA Filaments beyond Single-Strand DNA Gaps , 1997, Cell.

[56]  B. Nordén,et al.  Locations of functional domains in the RecA protein. Overlap of domains and regulation of activities. , 1996, European journal of biochemistry.

[57]  J. Sweasy,et al.  RecA protein of Escherichia coli has a third essential role in SOS mutator activity , 1990, Journal of bacteriology.

[58]  G. Walker Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli. , 1984, Microbiological reviews.