High-order graph matching kernel for early carcinoma EUS image classification

Endoscopic ultrasonography (EUS) is limited by variability in the examiner’s subjective interpretation to differentiate between normal, leiomyoma of esophagus and early esophageal carcinoma. By using information otherwise discarded by conventional EUS systems, quantitative spectral analysis of the raw pixels (picture elements) underlying EUS image enables lesions to be characterized more objectively. In this paper, we propose to represent texture features of early esophageal carcinoma in EUS images as a graph by expressing pixels as nodes and similarity between the gray-level or local features of the EUS image as edges. Then, similarity measurements such as a high-order graph matching kernel can be constructed so as to provide an objective quantification of the properties of the texture features of early esophageal carcinoma in EUS images. This is in terms of the topology and connectivity of the analyzed graphs. Because such properties are directly related to the structure of early esophageal carcinoma lesions in EUS images, they can be used as features for characterizing and classifying early esophageal carcinoma. Finally, we use a refined SVM model based on the new high-order graph matching kernel, resulting an optimal prediction of the types of esophageal lesions. A 10-fold cross validation strategy is employed to evaluate the classification performance. After multiple computer runs of the new kernel SVM model, the overall accuracy for the diagnosis between normal, leiomyoma of esophagus and early esophageal carcinoma was 93 %. Moreover, for the diagnosis of early esophageal carcinoma, the average accuracy, sensitivity, specificity, positive predictive value, and negative predictive value were 89.4 %, 94 %, 95 %, 89 %, and 97 % respectively. The area under all the three ROC curves were close to 1.

[1]  J. Munkres ALGORITHMS FOR THE ASSIGNMENT AND TRANSIORTATION tROBLEMS* , 1957 .

[2]  Thomas Gärtner,et al.  On Graph Kernels: Hardness Results and Efficient Alternatives , 2003, COLT.

[3]  William Stafford Noble,et al.  Support vector machine , 2013 .

[4]  P. Vilmann,et al.  Neural network analysis of dynamic sequences of EUS elastography used for the differential diagnosis of chronic pancreatitis and pancreatic cancer. , 2008, Gastrointestinal endoscopy.

[5]  Andrea May,et al.  The Impact of Endoscopic Ultrasound and Computed Tomography on the TNM Staging of Early Cancer in Barrett's Esophagus , 2006, The American Journal of Gastroenterology.

[6]  Hans-Peter Kriegel,et al.  Shortest-path kernels on graphs , 2005, Fifth IEEE International Conference on Data Mining (ICDM'05).

[7]  Masatsugu Shiba,et al.  Usefulness of Non-Magnifying Narrow-Band Imaging in Screening of Early Esophageal Squamous Cell Carcinoma: A Prospective Comparative Study Using Propensity Score Matching , 2014, The American Journal of Gastroenterology.

[8]  Sjoerd M Lagarde,et al.  Prediction of appropriateness of local endoscopic treatment for high-grade dysplasia and early adenocarcinoma by EUS and histopathologic features. , 2004, Gastrointestinal endoscopy.

[9]  Robert Jenssen,et al.  Kernel Entropy Component Analysis , 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[10]  Sabine Van Huffel,et al.  External Validation of Mathematical Models to Distinguish Between Benign and Malignant Adnexal Tumors: A Multicenter Study by the International Ovarian Tumor Analysis Group , 2007, Clinical Cancer Research.

[11]  C. H. Chen,et al.  Handbook of Pattern Recognition and Computer Vision , 1993 .

[12]  J. Greenleaf,et al.  Neural network analysis of EUS images to differentiate between pancreatic malignancy and pancreatitis. , 2001, Gastrointestinal endoscopy.

[13]  Folke Eriksson The law of sines for tetrahedra and n-simplices , 1978 .

[14]  Gilad Lerman,et al.  On d-dimensional d-semimetrics and simplex-type inequalities for high-dimensional sine functions , 2008, J. Approx. Theory.

[15]  Anne L. Martel,et al.  Classification of Dynamic Contrast-Enhanced Magnetic Resonance Breast Lesions by Support Vector Machines , 2008, IEEE Transactions on Medical Imaging.

[16]  Yang Zhao,et al.  Weighted SNP Set Analysis in Genome-Wide Association Study , 2013, PloS one.

[17]  Michael C. Kolios,et al.  Ultrasonic spectral parameter characterization of apoptosis. , 2002, Ultrasound in medicine & biology.

[18]  Tony Jebara,et al.  Probability Product Kernels , 2004, J. Mach. Learn. Res..

[19]  Michael L Kochman,et al.  Computer-assisted analysis of lymph nodes detected by EUS in patients with esophageal carcinoma. , 2002, Gastrointestinal endoscopy.

[20]  Ajai Jain,et al.  The Handbook of Pattern Recognition and Computer Vision , 1993 .

[21]  Hideyuki Tamura,et al.  Textural Features Corresponding to Visual Perception , 1978, IEEE Transactions on Systems, Man, and Cybernetics.

[22]  Edwin R. Hancock,et al.  A Graph Kernel from the Depth-Based Representation , 2014, S+SSPR.

[23]  S. Van Huffel,et al.  Prospective Internal Validation of Mathematical Models to Predict Malignancy in Adnexal Masses: Results from the International Ovarian Tumor Analysis Study , 2009, Clinical Cancer Research.

[24]  R Pellicano,et al.  Endoscopic ultrasonography for diagnosis and staging of pancreatic adenocarcinoma: key messages for clinicians. , 2014, Minerva medica.

[25]  Edwin R. Hancock,et al.  Depth-based complexity traces of graphs , 2014, Pattern Recognit..

[26]  Zaïd Harchaoui,et al.  Image Classification with Segmentation Graph Kernels , 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.

[27]  Can Xu,et al.  Differentiation of Pancreatic Cancer and Chronic Pancreatitis Using Computer-Aided Diagnosis of Endoscopic Ultrasound (EUS) Images: A Diagnostic Test , 2013, PloS one.

[28]  Baoxin Li,et al.  Digital Image Analysis Is a Useful Adjunct to Endoscopic Ultrasonographic Diagnosis of Subepithelial Lesions of the Gastrointestinal Tract , 2010, Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine.

[29]  Baoxin Li,et al.  Digital image analysis of EUS images accurately differentiates pancreatic cancer from chronic pancreatitis and normal tissue. , 2008, Gastrointestinal endoscopy.

[30]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[31]  B Julesz,et al.  Experiments in the visual perception of texture. , 1975, Scientific American.

[32]  Michael I. Jordan,et al.  Learning with Mixtures of Trees , 2001, J. Mach. Learn. Res..

[33]  Lu Bai,et al.  Information theoretic graph kernels , 2014 .

[34]  Matthijs C. Dorst Distinctive Image Features from Scale-Invariant Keypoints , 2011 .

[35]  Zhaoshen Li,et al.  Differential diagnosis of pancreatic cancer from normal tissue with digital imaging processing and pattern recognition based on a support vector machine of EUS images. , 2010, Gastrointestinal endoscopy.

[36]  H. C. Longuet-Higgins,et al.  An algorithm for associating the features of two images , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[37]  Kurt Mehlhorn,et al.  Weisfeiler-Lehman Graph Kernels , 2011, J. Mach. Learn. Res..

[38]  Kurt Mehlhorn,et al.  Efficient graphlet kernels for large graph comparison , 2009, AISTATS.

[39]  Anil K. Jain,et al.  Texture Analysis , 2018, Handbook of Image Processing and Computer Vision.

[40]  Edwin R. Hancock,et al.  High Order Structural Matching Using Dominant Cluster Analysis , 2011, ICIAP.

[41]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[42]  Michael V. Sivak,et al.  Differentiation of Benign and Malignant Lymph Nodes By Endoscopic Ultrasound (EUS) Spectrum Analysis , 2007 .