N 6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas
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L. Doré | Chuan He | L. Mets | X. Weng | X. Deng | Kai Chen | Ye Fu | Guan-Zheng Luo | Miao Yu | Dali Han | Ziyang Hao | Jianzhao Liu | Xingyu Lu | Q. Ji | Louis C. Doré
[1] L. Aravind,et al. DNA Methylation on N6-Adenine in C. elegans , 2015, Cell.
[2] Tao Pan,et al. High-resolution N(6) -methyladenosine (m(6) A) map using photo-crosslinking-assisted m(6) A sequencing. , 2015, Angewandte Chemie.
[3] Gideon Rechavi,et al. Gene expression regulation mediated through reversible m6A RNA methylation , 2014, Nature Reviews Genetics.
[4] D. Zilberman,et al. Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes , 2014, Cell.
[5] Wesley R. Legant,et al. Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells , 2014, Cell.
[6] Zachary D. Smith,et al. DNA methylation: roles in mammalian development , 2013, Nature Reviews Genetics.
[7] Gideon Rechavi,et al. Transcriptome-wide mapping of N6-methyladenosine by m6A-seq based on immunocapturing and massively parallel sequencing , 2013, Nature Protocols.
[8] Tyson A. Clark,et al. Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing , 2012, Nature Biotechnology.
[9] Richard J. Roberts,et al. The methylomes of six bacteria , 2012, Nucleic acids research.
[10] B. Pugh,et al. ChIP‐exo Method for Identifying Genomic Location of DNA‐Binding Proteins with Near‐Single‐Nucleotide Accuracy , 2012, Current protocols in molecular biology.
[11] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[12] Peter A. Jones. Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.
[13] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[14] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[15] Chengqi Yi,et al. N6-Methyladenosine in Nuclear RNA is a Major Substrate of the Obesity-Associated FTO , 2011, Nature chemical biology.
[16] Wen-Hsiung Li,et al. Coordinated histone modifications are associated with gene expression variation within and between species. , 2011, Genome research.
[17] B. Mueller‐Roeber,et al. AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE) 1 , 2011, Journal of phycology.
[18] M. Pellegrini,et al. Relationship between nucleosome positioning and DNA methylation , 2010, Nature.
[19] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[20] M. Pellegrini,et al. Conservation and divergence of methylation patterning in plants and animals , 2010, Proceedings of the National Academy of Sciences.
[21] Julie A. Law,et al. Establishing, maintaining and modifying DNA methylation patterns in plants and animals , 2010, Nature Reviews Genetics.
[22] Robert E. Jinkerson,et al. Genetic Engineering of Algae for Enhanced Biofuel Production , 2010, Eukaryotic Cell.
[23] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[24] Mikael Bodén,et al. MEME Suite: tools for motif discovery and searching , 2009, Nucleic Acids Res..
[25] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[26] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[27] Ovidiu Ruecker,et al. Strategies to facilitate transgene expression in Chlamydomonas reinhardtii , 2009, Planta.
[28] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[29] R. Lister,et al. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis , 2008, Cell.
[30] Y. Matsui,et al. Epigenetic events in mammalian germ-cell development: reprogramming and beyond , 2008, Nature Reviews Genetics.
[31] Lucy Shapiro,et al. A DNA methylation ratchet governs progression through a bacterial cell cycle , 2007, Proceedings of the National Academy of Sciences.
[32] Sara L. Zimmer,et al. The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions , 2007, Science.
[33] Adrian Bird,et al. Perceptions of epigenetics , 2007, Nature.
[34] D. Wion,et al. N6-methyl-adenine: an epigenetic signal for DNA–protein interactions , 2006, Nature Reviews Microbiology.
[35] François Berger,et al. N6-methyladenine: the other methylated base of DNA. , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.
[36] M. Schroda,et al. Analysis of Chromatin Structure in the Control Regions of the Chlamydomonas HSP70A and RBCS2 Genes , 2005, Plant Molecular Biology.
[37] W. Lam,et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells , 2005, Nature Genetics.
[38] D. M. Krylov,et al. Genome-Wide Annotation and Expression Profiling of Cell Cycle Regulatory Genes in Chlamydomonas reinhardtii1[w] , 2005, Plant Physiology.
[39] D. Low,et al. Roles of DNA Adenine Methylation in Regulating Bacterial Gene Expression and Virulence , 2001, Infection and Immunity.
[40] W. Mages,et al. A link between DNA methylation and epigenetic silencing in transgenic Volvox carteri. , 2001, Nucleic acids research.
[41] H. Cerutti,et al. Epigenetic silencing of a foreign gene in nuclear transformants of Chlamydomonas. , 1997, The Plant cell.
[42] J. Rogers,et al. Comparison of the effects of N6-methyldeoxyadenosine and N5-methyldeoxycytosine on transcription from nuclear gene promoters in barley. , 1995, The Plant journal : for cell and molecular biology.
[43] Nancy Kleckner,et al. SeqA: A negative modulator of replication initiation in E. coli , 1994, Cell.
[44] J. V. Van Etten,et al. Characterization of Chlorella virus PBCV-1 CviAII restriction and modification system. , 1992, Nucleic acids research.
[45] W. Messer,et al. Timing and targeting: The biological functions of Dam methylation in E. coli , 1988, Cell.
[46] N. Sternberg. Evidence that adenine methylation influences DNA-protein interactions in Escherichia coli , 1985, Journal of bacteriology.
[47] P. Rae,et al. Macronuclear DNA of the hypotrichous ciliate Oxytricha fallax. , 1978, Proceedings of the National Academy of Sciences of the United States of America.
[48] S. Hattman,et al. Comparative study of DNA methylation in three unicellular eucaryotes , 1978, Journal of bacteriology.
[49] P. V. von Hippel,et al. Effects of methylation on the stability of nucleic acid conformations. Studies at the polymer level. , 1978, The Journal of biological chemistry.
[50] G. Vovis,et al. Complementary action of restriction enzymes endo R-DpnI and Endo R-DpnII on bacteriophage f1 DNA. , 1977, Journal of molecular biology.
[51] J. M. Goddard,et al. Methylated bases in DNA from Paramecium aurelia. , 1974, Biochimica et biophysica acta.
[52] L. Aravind,et al. Natural history of eukaryotic DNA methylation systems. , 2011, Progress in molecular biology and translational science.
[53] F. Dilworth,et al. Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography , 2008, Nature Protocols.
[54] M. Ehrlich,et al. Chapter 10 Naturally Occurring Modified Nucleosides in DNA , 1990 .
[55] P. Crain,et al. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. , 1990, Methods in enzymology.