Utilization of tmRNA sequences for bacterial identification

[1]  Kelly P. Williams,et al.  The tmRNA website , 2014, Nucleic Acids Res..

[2]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[3]  R Amann,et al.  Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. , 2000, FEMS microbiology reviews.

[4]  Rudolf Amann,et al.  Unlabeled Helper Oligonucleotides Increase the In Situ Accessibility to 16S rRNA of Fluorescently Labeled Oligonucleotide Probes , 2000, Applied and Environmental Microbiology.

[5]  L. Shapiro,et al.  tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[6]  D. Bartel,et al.  Resuming translation on tmRNA: a unique mode of determining a reading frame , 1999, The EMBO journal.

[7]  J. F. Atkins,et al.  Eubacterial tmRNAs: everywhere except the alpha-proteobacteria? , 1999, Biochimica et biophysica acta.

[8]  G. Muyzer DGGE/TGGE a method for identifying genes from natural ecosystems. , 1999, Current opinion in microbiology.

[9]  K. Schleifer,et al.  In situ detection of Escherichia coli cells containing ColE1-related plasmids by hybridization to regulatory RNA II. , 1999, Systematic and applied microbiology.

[10]  S. Ehrlich,et al.  Molecular diversity and relationship within Lactococcus lactis, as revealed by randomly amplified polymorphic DNA (RAPD). , 1998, Systematic and applied microbiology.

[11]  R. Amann,et al.  Flow Cytometric Analysis of the In Situ Accessibility of Escherichia coli 16S rRNA for Fluorescently Labeled Oligonucleotide Probes , 1998, Applied and Environmental Microbiology.

[12]  M Weizenegger,et al.  Bacterial phylogeny based on comparative sequence analysis (review) , 1998, Electrophoresis.

[13]  K. Schleifer,et al.  In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes. , 1998, FEMS microbiology letters.

[14]  J. F. Atkins,et al.  A rapid in vitro method for obtaining RNA accessibility patterns for complementary DNA probes: correlation with an intracellular pattern and known RNA structures. , 1997, Nucleic acids research.

[15]  R. Amann,et al.  Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification , 1997, Applied and environmental microbiology.

[16]  Frank Oliver Glöckner,et al.  Modern methods in subsurface microbiology: in situ identification of microorganisms with nucleic acid probes , 1997 .

[17]  D. Bartel,et al.  Phylogenetic analysis of tmRNA secondary structure. , 1996, RNA.

[18]  R Staden,et al.  The staden sequence analysis package , 1996, Molecular biotechnology.

[19]  R. Sauer,et al.  Role of a Peptide Tagging System in Degradation of Proteins Synthesized from Damaged Messenger RNA , 1996, Science.

[20]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.

[21]  H. Inokuchi,et al.  A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[22]  H. Himeno,et al.  tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis. , 1994, Nucleic acids research.

[23]  Dittmar Hahn,et al.  Detection of mRNA in Streptomyces Cells by Whole-Cell Hybridization with Digoxigenin-Labeled Probes , 1993, Applied and environmental microbiology.

[24]  D. Gardiol,et al.  Cloning of the citrate permease gene of Lactococcus lactis subsp. lactis biovar diacetylactis and expression in Escherichia coli , 1990, Applied and environmental microbiology.

[25]  D. Apirion,et al.  The gene for a small stable RNA (10Sa RNA) of Escherichia coli , 1989, Molecular microbiology.

[26]  D. Kemp,et al.  A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. , 1988, Nucleic acids research.

[27]  C. Woese Bacterial evolution , 1987, Microbiological reviews.

[28]  M. Chopin,et al.  Plasmid‐mediated UV‐protection in Streptococcus lactis , 1985 .

[29]  L. Mckay,et al.  Characterization of Plasmid Deoxyribonucleic Acid in Streptococcus lactis subsp. diacetylactis: Evidence for Plasmid-Linked Citrate Utilization , 1979, Applied and environmental microbiology.

[30]  S. Y. Lee,et al.  Small Stable RNAs from Escherichia coli: Evidence for the Existence of New Molecules and for a New Ribonucleoprotein Particle Containing 6S RNA , 1978, Journal of bacteriology.

[31]  C. Anagnostopoulos,et al.  REQUIREMENTS FOR TRANSFORMATION IN BACILLUS SUBTILIS , 1961, Journal of bacteriology.

[32]  Christian Zwieb,et al.  tmRDB (tmRNA database) , 2003, Nucleic Acids Res..

[33]  Christian Zwieb,et al.  tmRDB (tmRNA database) , 2001, Nucleic Acids Res..

[34]  James R. Cole,et al.  The RDP (Ribosomal Database Project) continues , 2000, Nucleic Acids Res..

[35]  C. Zwieb,et al.  Comparative sequence analysis of tmRNA. , 1999, Nucleic acids research.

[36]  K. Schleifer,et al.  Rapid genotypic differentiation of Lactococcus lactis subspecies and biovar , 1997 .

[37]  R. Amann In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes , 1995 .