Brief Report: Polymorphisms in TNF-α/TNFR1 Pathway Genes Are Associated With CD4+ T-Cell Recovery in HIV-1–Infected Individuals on Antiretroviral Therapy

Supplemental Digital Content is Available in the Text. Background: Antiretroviral therapy (ART) is an important hallmark of HIV-1 treatment, enabling viral load suppression to undetectable levels and CD4+ T-cell recovery. However, some individuals do not recover the CD4+ T-cell count to normal levels, despite viral suppression. We hypothesize that variation in genes involved in extrinsic apoptosis pathways may influence interindividual immune recovery during ART. Methods: We assessed clinical-epidemiological variables and the allelic/genotypic distribution of functional single nucleotide polymorphisms in genes involved in extrinsic apoptosis pathways (TNFRSF1A: rs1800692 and rs767455; TNFAIP3: rs2270926; NFKBIA: rs8904; and TNF-α: rs1800629) and their relationship with immune recovery in ART-treated (1 year) HIV-1–infected individuals. We enrolled 155 HIV-1–infected individuals, with 102 individuals showing immunological success and 53 with immunological failure. Results: Through univariate analysis, we observed that the male sex (60.4%, P = 0.002) showed a higher median of age at treatment onset (34.8 years, P = 0.034) and higher time until virological suppression (6 months, P = 0.035), both risk factors for immune failure. Survival analysis revealed that individuals who started ART treatment with CD4+ T-cell count <200 cells/mm3 took a longer time to immunological recovery (median time = 27 months, P = 0.029). ART containing zidovudine also was associated with immune recovery in univariate e multivariate analysis. Variants in TNFRSF1A (rs767455: T and TT; rs1800692-rs767455: T-T combination) and NFKBIA (rs8904: A) genes were associated with immune failure, whereas NFKBIA (rs8904: GA) and TNF-α (rs1800629: GA) were with CD4+ T-cell recovery. Conclusions: Clinical-epidemiological variants in genes involved in extrinsic apoptosis pathways might influence the CD4+ T-cell immune recovery.

[1]  J. Royo Hardy Weinberg Equilibrium Disturbances in Case-Control Studies Lead to Non-Conclusive Results. , 2020, Cell journal.

[2]  José Leandro Andrade-Santos,et al.  Immunological recovery failure in cART‐treated HIV‐positive patients is associated with reduced thymic output and RTE CD4+ T cell death by pyroptosis , 2020, Journal of leukocyte biology.

[3]  N. V. Trung,et al.  Long‐term viral suppression and immune recovery during first‐line antiretroviral therapy: a study of an HIV‐infected adult cohort in Hanoi, Vietnam , 2017, Journal of the International AIDS Society.

[4]  Z. Qin,et al.  The effect of plasma auto‐IgGs on CD4+ T cell apoptosis and recovery in HIV‐infected patients under antiretroviral therapy , 2017, Journal of leukocyte biology.

[5]  Min Li,et al.  Upregulation of Apoptosis Pathway Genes in Peripheral Blood Mononuclear Cells of HIV-Infected Individuals with Antiretroviral Therapy-Associated Mitochondrial Toxicity , 2017, Antimicrobial Agents and Chemotherapy.

[6]  Amit Kumar,et al.  Targeting TNF and TNF Receptor Pathway in HIV-1 Infection: from Immune Activation to Viral Reservoirs , 2017, Viruses.

[7]  P. Fagone,et al.  CD4+ T-cell gene expression of healthy donors, HIV-1 and elite controllers: Immunological chaos. , 2016, Cytokine.

[8]  M. Seydi,et al.  Initial suboptimal CD4 reconstitution with antiretroviral therapy despite full viral suppression in a cohort of HIV-infected patients in Senegal. , 2015, Medecine et maladies infectieuses.

[9]  M. Stayoussef,et al.  Tumor Necrosis Factor Alpha (−238 / −308) and TNFRII-VNTR (−322) Polymorphisms as Genetic Biomarkers of Susceptibility to Develop Cervical Cancer Among Tunisians , 2015, Pathology & Oncology Research.

[10]  A. Landay,et al.  Short communication: Apoptosis pathways in HIV-1-infected patients before and after highly active antiretroviral therapy: relevance to immune recovery. , 2015, AIDS research and human retroviruses.

[11]  Z. Dlamini,et al.  Human Immunodeficiency Virus-1 (HIV-1)-Mediated Apoptosis: New Therapeutic Targets , 2014, Viruses.

[12]  S. Yamasaki,et al.  The tumor necrosis factor alpha-induced protein 3 (TNFAIP3, A20) imposes a brake on antitumor activity of CD8 T cells , 2014, Proceedings of the National Academy of Sciences.

[13]  D. Pang,et al.  Association of TNF-α, TNFRSF1A and TNFRSF1B Gene Polymorphisms with the Risk of Sporadic Breast Cancer in Northeast Chinese Han Women , 2014, PloS one.

[14]  T. Sterling,et al.  Sex differences in HIV outcomes in the highly active antiretroviral therapy era: a systematic review. , 2014, AIDS research and human retroviruses.

[15]  M. Egger,et al.  Zidovudine impairs immunological recovery on first-line antiretroviral therapy: collaborative analysis of cohort studies in southern Africa , 2013, AIDS.

[16]  C. Trautwein,et al.  TNFR1 determines progression of chronic liver injury in the IKKγ/Nemo genetic model , 2013, Cell Death and Differentiation.

[17]  M. Sharif,et al.  Evaluation of NFKB1A variants in patients with knee osteoarthritis , 2013, International journal of immunogenetics.

[18]  L. Picker,et al.  CD4+ T‐cell depletion in HIV infection: mechanisms of immunological failure , 2013, Immunological reviews.

[19]  M. Barat‐Houari,et al.  Identification of a new exon 2-skipped TNFR1 transcript: regulation by three functional polymorphisms of the TNFR-associated periodic syndrome (TRAPS) gene , 2013, Annals of the rheumatic diseases.

[20]  H. Nishimasu,et al.  Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF‐κB regulation , 2012, The EMBO journal.

[21]  Michael Rayment,et al.  Prevention of HIV-1 infection with early antiretroviral therapy , 2012, Journal of Family Planning and Reproductive Health Care.

[22]  J. Xie,et al.  Reduced thymic output is a major mechanism of immune reconstitution failure in HIV-infected patients after long-term antiretroviral therapy. , 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[23]  B. Haynes,et al.  Acute HIV-1 Infection. , 2011, The New England journal of medicine.

[24]  Peter Scheurich,et al.  TNFR1‐induced activation of the classical NF‐κB pathway , 2011, The FEBS journal.

[25]  Susan Moir,et al.  Pathogenic mechanisms of HIV disease. , 2011, Annual review of pathology.

[26]  Noula Shembade,et al.  A20 inhibition of NFκB and inflammation: Targeting E2:E3 ubiquitin enzyme complexes , 2010, Cell cycle.

[27]  Jing Cui,et al.  Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci , 2010, Nature Genetics.

[28]  A. Scott,et al.  A Hardy-Weinberg equilibrium test for analyzing population genetic surveys with complex sample designs. , 2010, American journal of epidemiology.

[29]  W. Abbas,et al.  Macrophage signaling in HIV-1 infection , 2010, Retrovirology.

[30]  E. Bruera,et al.  Role of Inflammation Gene Polymorphisms on Pain Severity in Lung Cancer Patients , 2009, Cancer Epidemiology, Biomarkers & Prevention.

[31]  P. Massip,et al.  Long‐term evolution of CD4 count in patients with a plasma HIV RNA persistently <500 copies/mL during treatment with antiretroviral drugs , 2007, HIV medicine.

[32]  Fernando Aiuti,et al.  Failure to reconstitute CD4+ T-cells despite suppression of HIV replication under HAART. , 2006, AIDS reviews.

[33]  D. Ussery,et al.  The TNFα receptor TNFRSF1A and genes encoding the amiloride-sensitive sodium channel ENaC as modulators in cystic fibrosis , 2006, Human Genetics.

[34]  Geoffrey H. Holm,et al.  Distinct Mechanisms of CD4+ and CD8+ T-Cell Activation and Bystander Apoptosis Induced by Human Immunodeficiency Virus Type 1 Virions , 2005, Journal of Virology.

[35]  A. Cohen,et al.  Tumor Necrosis Factor Receptor Gene Polymorphisms in Crohn's Disease: Association with Clinical Phenotypes , 2005, The American Journal of Gastroenterology.

[36]  Mark Daly,et al.  Haploview: analysis and visualization of LD and haplotype maps , 2005, Bioinform..

[37]  D. Price,et al.  CD4+ T Cell Depletion during all Stages of HIV Disease Occurs Predominantly in the Gastrointestinal Tract , 2004, The Journal of experimental medicine.

[38]  M. Lederman,et al.  Continued CD4 cell count increases in HIV-infected adults experiencing 4 years of viral suppression on antiretroviral therapy , 2003, AIDS.

[39]  O. Kirk,et al.  Factors associated with a reduced CD4 lymphocyte count response to HAART despite full viral suppression in the EuroSIDA study , 2003, HIV medicine.

[40]  S. Moreno,et al.  Long-term outcomes among antiretroviral-naive human immunodeficiency virus-infected patients with small increases in CD4+ cell counts after successful virologic suppression. , 2002, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[41]  M. Lederman,et al.  Poor CD4 T cell restoration after suppression of HIV-1 replication may reflect lower thymic function , 2001, AIDS.

[42]  R. Aspinall,et al.  Both age and gender affect thymic output: more recent thymic migrants in females than males as they age , 2001, Clinical and experimental immunology.

[43]  David G. Cox,et al.  Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis , 2001, Bioinform..

[44]  R. Hershow,et al.  Discordant CD4 T lymphocyte responses to antiretroviral therapy for HIV infection are associated with ex-vivo rates of apoptosis. , 2001, AIDS.

[45]  S. Koizumi,et al.  A novel single-nucleotide polymorphism in the 3'-untranslated region of the human dihydrofolate reductase gene with enhanced expression. , 2001, Clinical cancer research : an official journal of the American Association for Cancer Research.

[46]  H. Knobel,et al.  Virologic outcome and predictors of virologic failure of highly active antiretroviral therapy containing protease inhibitors. , 2001, AIDS patient care and STDs.

[47]  Shirley A. Miller,et al.  A simple salting out procedure for extracting DNA from human nucleated cells. , 1988, Nucleic acids research.

[48]  M. Mohraz,et al.  Different Degrees of Immune Recovery Using Antiretroviral Regimens with Vonavir or Zidovudine/Lamivudine/Efavirenz in HIVPositive Patients Receiving First Line Treatment in Iran. , 2018, Infectious disorders drug targets.

[49]  L. Catrysse,et al.  A20 in inflammation and autoimmunity. , 2014, Trends in immunology.

[50]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[51]  Jian Wang,et al.  Testing departure from Hardy-Weinberg proportions. , 2012, Methods in molecular biology.