An Engineered Yeast Efficiently Secreting Penicillin

This study aimed at developing an alternative host for the production of penicillin (PEN). As yet, the industrial production of this β-lactam antibiotic is confined to the filamentous fungus Penicillium chrysogenum. As such, the yeast Hansenula polymorpha, a recognized producer of pharmaceuticals, represents an attractive alternative. Introduction of the P. chrysogenum gene encoding the non-ribosomal peptide synthetase (NRPS) δ-(L-α-aminoadipyl)-L-cysteinyl-D-valine synthetase (ACVS) in H. polymorpha, resulted in the production of active ACVS enzyme, when co-expressed with the Bacillus subtilis sfp gene encoding a phosphopantetheinyl transferase that activated ACVS. This represents the first example of the functional expression of a non-ribosomal peptide synthetase in yeast. Co-expression with the P. chrysogenum genes encoding the cytosolic enzyme isopenicillin N synthase as well as the two peroxisomal enzymes isopenicillin N acyl transferase (IAT) and phenylacetyl CoA ligase (PCL) resulted in production of biologically active PEN, which was efficiently secreted. The amount of secreted PEN was similar to that produced by the original P. chrysogenum NRRL1951 strain (approx. 1 mg/L). PEN production was decreased over two-fold in a yeast strain lacking peroxisomes, indicating that the peroxisomal localization of IAT and PCL is important for efficient PEN production. The breakthroughs of this work enable exploration of new yeast-based cell factories for the production of (novel) β-lactam antibiotics as well as other natural and semi-synthetic peptides (e.g. immunosuppressive and cytostatic agents), whose production involves NRPS's.

[1]  M. Veenhuis,et al.  Methanol metabolism in a peroxisome-deficient mutant of Hansenula polymorpha: a physiological study , 2004, Archives of Microbiology.

[2]  K. Faber,et al.  The methylotrophic yeast Hansenula polymorpha: a versatile cell factory. , 2000, Enzyme and microbial technology.

[3]  J. Heijnen,et al.  Cytosolic NADPH metabolism in penicillin-G producing and non-producing chemostat cultures of Penicillium chrysogenum. , 2007, Metabolic engineering.

[4]  C. Walsh,et al.  Harnessing the biosynthetic code: combinations, permutations, and mutations. , 1998, Science.

[5]  Zheng Zhao,et al.  Quantitative analysis of metabolites in complex biological samples using ion-pair reversed-phase liquid chromatography-isotope dilution tandem mass spectrometry. , 2008, Journal of chromatography. A.

[6]  C. Walsh,et al.  Post-translational modification of polyketide and nonribosomal peptide synthases. , 1997, Current opinion in chemical biology.

[7]  S. Waksman,et al.  Strain Specificity and Production of Antibiotic Substances: III. Penicillium Notatum-Chrysogenum Group. , 1944, Proceedings of the National Academy of Sciences of the United States of America.

[8]  K. Faber,et al.  The Hansenula polymorpha PER9 Gene Encodes a Peroxisomal Membrane Protein Essential for Peroxisome Assembly and Integrity (*) , 1996, The Journal of Biological Chemistry.

[9]  M. Marahiel,et al.  Ways of Assembling Complex Natural Products on Modular Nonribosomal Peptide Synthetases , 2002, Chembiochem : a European journal of chemical biology.

[10]  S. E. Smith Antibacterial drugs , 2020, Reactions Weekly.

[11]  A. Driessen,et al.  Compartmentalization and transport in beta-lactam antibiotics biosynthesis. , 2004, Advances in biochemical engineering/biotechnology.

[12]  J. Heijnen,et al.  Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards. , 2005, Analytical biochemistry.

[13]  A. Demain Biosynthesis of β-Lactam Antibiotics , 1983 .

[14]  M. Marahiel,et al.  Functional characterization of 4'-phosphopantetheinyl transferase genes of bacterial and fungal origin by complementation of Saccharomyces cerevisiae lys5. , 2002, FEMS microbiology letters.

[15]  M. Veenhuis,et al.  Characterization of the Hansenula polymorpha PUR7 gene and its use as selectable marker for targeted chromosomal integration. , 2002, FEMS yeast research.

[16]  I. J. van der Klei,et al.  Peroxisome proliferation in Hansenula polymorpha requires Dnm1p which mediates fission but not de novo formation. , 2008, Biochimica et biophysica acta.

[17]  Gleeson Mag The genetic analysis of the methylotrophic yeast Hansenula polymorpha. , 1986 .

[18]  A. Driessen,et al.  Structural and functional properties of plasma membranes from the filamentous fungus Penicillium chrysogenum. , 1994, European journal of biochemistry.

[19]  I. J. van der Klei,et al.  Reprogramming Hansenula polymorpha for penicillin production: expression of the Penicillium chrysogenum pcl gene. , 2007, FEMS yeast research.

[20]  M. Veenhuis,et al.  Significance of yeast peroxisomes in the metabolism of choline and ethanolamine , 1983, Antonie van Leeuwenhoek.

[21]  Mark J. Belsey,et al.  The antibacterial drugs market , 2007, Nature Reviews Drug Discovery.

[22]  P. Sudbery,et al.  Genetic analysis in the methylotrophic yeast Hansenula polymorpha , 1988 .

[23]  A. Driessen,et al.  d -( L - a -Aminoadipyl)- L -cysteinyl- D -valine synthetase, that mediates the first committed step in penicillin biosynthesis, is a cytosolic enzyme , 2002 .

[24]  K. Faber,et al.  Deviant Pex3p Levels affect Normal Peroxisome Formation in Hansenula polymorpha: High Steady‐state Levels of the Protein fully Abolish Matrix Protein Import , 1997, Yeast.

[25]  Jie Zhang,et al.  Heterologous production of non-ribosomal peptide LLD-ACV in Saccharomyces cerevisiae. , 2009, Metabolic engineering.

[26]  P. Sudbery,et al.  Transformation of the methylotrophic yeast Hansenula polymorpha , 1986 .

[27]  A. Brakhage,et al.  Contribution of Peroxisomes to Penicillin Biosynthesis in Aspergillus nidulans , 2009, Eukaryotic Cell.

[28]  K. Faber,et al.  Overproduction of Pex5p Stimulates Import of Alcohol Oxidase and Dihydroxyacetone Synthase in a Hansenula polymorpha pex14Null Mutant* , 2000, The Journal of Biological Chemistry.

[29]  H. Waterham,et al.  The Hansenula polymorpha PER1 gene is essential for peroxisome biogenesis and encodes a peroxisomal matrix protein with both carboxy- and amino-terminal targeting signals , 1994, The Journal of cell biology.

[30]  J. Hiltunen,et al.  Pxmp2 Is a Channel-Forming Protein in Mammalian Peroxisomal Membrane , 2009, PloS one.

[31]  J. Cregg,et al.  New yeast expression platforms based on methylotrophic Hansenula polymorpha and Pichia pastoris and on dimorphic Arxula adeninivorans and Yarrowia lipolytica - a comparison. , 2005, FEMS yeast research.

[32]  I. J. van der Klei,et al.  Synthesis of Penicillium chrysogenum acetyl-CoA:isopenicillin N acyltransferase in Hansenula polymorpha: first step towards the introduction of a new metabolic pathway. , 2005, FEMS yeast research.

[33]  Hyun Ah Kang,et al.  Process development in Hansenula polymorpha and Arxula adeninivorans, a re-assessment , 2009 .

[34]  C. Kubicek,et al.  Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae , 1983, Archives of Microbiology.

[35]  I. J. van der Klei,et al.  Production of functionally active Penicillium chrysogenum isopenicillin N synthase in the yeast Hansenula polymorpha , 2008, BMC biotechnology.

[36]  J. Heijnen,et al.  Critical evaluation of sampling techniques for residual glucose determination in carbon‐limited chemostat culture of Saccharomyces cerevisiae , 2003, Biotechnology and bioengineering.

[37]  Marten Veenhuis,et al.  Overproduction of a single protein, Pc-Pex11p, results in 2-fold enhanced penicillin production by Penicillium chrysogenum. , 2005, Fungal genetics and biology : FG & B.

[38]  J. Martín,et al.  Isopenicillin N synthetase of Penicillium chrysogenum, an enzyme that converts delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine to isopenicillin N , 1985, Antimicrobial Agents and Chemotherapy.

[39]  M. Marahiel,et al.  How do peptide synthetases generate structural diversity? , 1999, Chemistry & biology.