A revised order of subunits in mammalian septin complexes

Septins are GTP binding proteins considered to be novel components of the cytoskeleton. They polymerize into filaments based on hexameric or octameric core particles in which two copies of either three or four different septins, respectively, assemble into a specific sequence. Viable combinations of the 13 human septins are believed to obey substitution rules in which the different septins involved must come from distinct subgroups. The hexameric assembly, for example, has been reported to be SEPT7–SEPT6–SEPT2–SEPT2–SEPT6–SEPT7. Here, we have replaced SEPT2 by SEPT5 according to the substitution rules and used transmission electron microscopy to demonstrate that the resulting recombinant complex assembles into hexameric particles which are inverted with respect that predicted previously. MBP‐SEPT5 constructs and immunostaining show that SEPT5 occupies the terminal positions of the hexamer. We further show that this is also true for the assembly including SEPT2, in direct contradiction with that reported previously. Consequently, both complexes expose an NC interface, as reported for yeast, which we show to be more susceptible to high salt concentrations. The correct assembly for the canonical combination of septins 2‐6‐7 is therefore established to be SEPT2–SEPT6–SEPT7–SEPT7–SEPT6–SEPT2, implying the need for revision of the mechanisms involved in filament assembly.

[1]  P. Wadsworth 2019 Cytoskeleton Paper of the Year: A revised order of subunits in mammalian septin complexes , 2020, Cytoskeleton.

[2]  F. Calvo,et al.  Regulation of mechanotransduction: Emerging roles for septins , 2018, Cytoskeleton.

[3]  R. Garratt,et al.  Septin structure and filament assembly , 2017, Biophysical Reviews.

[4]  Michael Schatz,et al.  Single-particle cryo-EM using alignment by classification (ABC): the structure of Lumbricus terrestris haemoglobin , 2017, IUCrJ.

[5]  P. Derreumaux,et al.  Protein-RNA complexation driven by the charge regulation mechanism. , 2017, Biochemical and biophysical research communications.

[6]  F. L. Barroso da Silva,et al.  Benchmarking a Fast Proton Titration Scheme in Implicit Solvent for Biomolecular Simulations. , 2017, Journal of chemical theory and computation.

[7]  B. Zieger,et al.  The Mammalian Septin Interactome , 2017, Front. Cell Dev. Biol..

[8]  J. C. Borges,et al.  Heterotypic Coiled-Coil Formation is Essential for the Correct Assembly of the Septin Heterofilament. , 2016, Biophysical journal.

[9]  Rodrigo Villares Portugal,et al.  Multivariate Statistical Analysis of Large Datasets: Single Particle Electron Microscopy , 2016 .

[10]  P. Derreumaux,et al.  Electrostatics analysis of the mutational and pH effects of the N-terminal domain self-association of the major ampullate spidroin. , 2016, Soft matter.

[11]  F. Silva,et al.  On the complexation of whey proteins , 2016 .

[12]  Shalin B. Mehta,et al.  Septin assemblies form by diffusion-driven annealing on membranes , 2014, Proceedings of the National Academy of Sciences.

[13]  J. Brandão-Neto,et al.  Crystal Structure of a Schistosoma mansoni Septin Reveals the Phenomenon of Strand Slippage in Septins Dependent on the Nature of the Bound Nucleotide* , 2014, The Journal of Biological Chemistry.

[14]  A. Wittinghofer,et al.  Human septin isoforms and the GDP-GTP cycle , 2013, Biological chemistry.

[15]  Michael Schatz,et al.  Four-Dimensional Cryo Electron Microscopy at Quasi Atomic Resolution: "IMAGIC 4D" , 2012 .

[16]  W. Garcia,et al.  Septin C-Terminal Domain Interactions: Implications for Filament Stability and Assembly , 2012, Cell Biochemistry and Biophysics.

[17]  Pascale Cossart,et al.  Septins: the fourth component of the cytoskeleton , 2012, Nature Reviews Molecular Cell Biology.

[18]  W. Trimble,et al.  Septins at a glance , 2011, Journal of Cell Science.

[19]  W. Trimble,et al.  SEPT9 occupies the terminal positions in septin octamers and mediates polymerization-dependent functions in abscission , 2011, The Journal of cell biology.

[20]  M. Gullberg,et al.  Deciphering the rules governing assembly order of mammalian septin complexes , 2011, Molecular biology of the cell.

[21]  B. Zieger,et al.  Characterization of human septin interactions , 2011, Biological chemistry.

[22]  J. Pringle,et al.  New insights into the phylogenetic distribution and evolutionary origins of the septins , 2011, Biological chemistry.

[23]  E. Nogales,et al.  Septin filament formation is essential in budding yeast. , 2011, Developmental cell.

[24]  J. Kobarg,et al.  A Draft of the Human Septin Interactome , 2010, PloS one.

[25]  Mikael Lund,et al.  Molecular evidence of stereo-specific lactoferrin dimers in solution. , 2010, Biophysical chemistry.

[26]  Y. Barral,et al.  Septins and the lateral compartmentalization of eukaryotic membranes. , 2009, Developmental cell.

[27]  T. Alber,et al.  Targeting metastable coiled-coil domains by computational design. , 2008, Journal of the American Chemical Society.

[28]  Tom Alber,et al.  Saccharomyces cerevisiae septins: Supramolecular organization of heterooligomers and the mechanism of filament assembly , 2008, Proceedings of the National Academy of Sciences.

[29]  Y. Barral,et al.  The septin family of GTPases: architecture and dynamics , 2008, Nature Reviews Molecular Cell Biology.

[30]  S. Baldwin,et al.  3D reconstruction of mammalian septin filaments. , 2008, Journal of molecular biology.

[31]  K. Henrick,et al.  Inference of macromolecular assemblies from crystalline state. , 2007, Journal of molecular biology.

[32]  H. Stark,et al.  Structural insight into filament formation by mammalian septins. , 2007, Nature.

[33]  M. Steinmetz,et al.  The Caenorhabditis elegans septin complex is nonpolar , 2007, The EMBO journal.

[34]  M. Momany,et al.  Analysis of septins across kingdoms reveals orthology and new motifs , 2007, BMC Evolutionary Biology.

[35]  J. Corral,et al.  Platelet septin complexes form rings and associate with the microtubular network , 2006, Journal of thrombosis and haemostasis : JTH.

[36]  K. Nagata,et al.  Biochemical and Cell Biological Analyses of a Mammalian Septin Complex, Sept7/9b/11* , 2004, Journal of Biological Chemistry.

[37]  J. Thorner,et al.  Protein-protein interactions governing septin heteropentamer assembly and septin filament organization in Saccharomyces cerevisiae. , 2004, Molecular biology of the cell.

[38]  M. Kinoshita Assembly of mammalian septins. , 2003, Journal of biochemistry.

[39]  J. Pringle,et al.  The septin cortex at the yeast mother-bud neck. , 2001, Current opinion in microbiology.

[40]  LA Greene Gene therapy for CF. , 2001, Environmental health perspectives.

[41]  M. Mann,et al.  Polymerization of Purified Yeast Septins: Evidence That Organized Filament Arrays May Not Be Required for Septin Function , 1998, The Journal of cell biology.

[42]  B. Alberts,et al.  A purified Drosophila septin complex forms filaments and exhibits GTPase activity , 1996, The Journal of cell biology.

[43]  R. Seckler,et al.  Interactions of tubulin with guanylyl-(beta-gamma-methylene)diphosphonate. Formation and assembly of a stoichiometric complex. , 1990, The Journal of biological chemistry.

[44]  A. Wittinghofer,et al.  Structural studies on mammalian septins - New insights into filament formation , 2007 .