Identifying optimal incomplete phylogenetic data sets from sequence databases.

[1]  F. H. C. Marriott,et al.  Analyse de Donnees et Informatique , 1982 .

[2]  Mark Wilkinson,et al.  Coping with Abundant Missing Entries in Phylogenetic Inference Using Parsimony , 1995 .

[3]  J. Wiens,et al.  Combining data sets with different numbers of taxa for phylogenetic analysis , 1995 .

[4]  Andrew Rambaut,et al.  Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees , 1997, Comput. Appl. Biosci..

[5]  Sheldon M. Ross.  Introduction to probability models , 1998 .

[6]  J. Wiens.  Does adding characters with missing data increase or decrease phylogenetic accuracy? , 1998, Systematic biology.

[7]  Mark W. Chase,et al.  The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes , 1999, Nature.

[8]  David Fernández-Baca,et al.  Flipping: A supertree construction method , 2001, Bioconsensus.

[9]  S. O’Brien,et al.  Molecular phylogenetics and the origins of placental mammals , 2001, Nature.

[10]  Terry Gaasterland,et al.  The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Maureen Kearney,et al.  Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions. , 2002, Systematic biology.

[12]  N. Moran,et al.  From Gene Trees to Organismal Phylogeny in Prokaryotes:The Case of the γ-Proteobacteria , 2003, PLoS biology.

[13]  Michael J Sanderson,et al.  The challenge of constructing large phylogenetic trees. , 2003, Trends in plant science.

[14]  Michael J. Sanderson,et al.  R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock , 2003, Bioinform..

[15]  Oliver Eulenstein,et al.  Obtaining maximal concatenated phylogenetic data sets from large sequence databases. , 2003, Molecular biology and evolution.

[16]  S. Carroll,et al.  Genome-scale approaches to resolving incongruence in molecular phylogenies , 2003, Nature.

[17]  J. Wiens,et al.  Missing data, incomplete taxa, and phylogenetic accuracy. , 2003, Systematic biology.

[18]  M. Eisen,et al.  Why PLoS Became a Publisher , 2003, PLoS biology.

[19]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[20]  Peter L. Hammer,et al.  Consensus algorithms for the generation of all maximal bicliques , 2004, Discret. Appl. Math..

[21]  Joel Cracraft,et al.  Assembling the tree of life , 2004 .

[22]  P. Holland,et al.  Phylogenomics of eukaryotes: impact of missing data on large alignments. , 2004, Molecular biology and evolution.

[23]  J. G. Burleigh,et al.  Prospects for Building the Tree of Life from Large Sequence Databases , 2004, Science.

[24]  Ziheng Yang.  Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods , 1994, Journal of Molecular Evolution.

[25]  David Fernández-Baca,et al.  Performance of flip supertree construction with a heuristic algorithm. , 2004, Systematic biology.

[26]  O. Bininda-Emonds,et al.  The evolution of supertrees. , 2004, Trends in ecology & evolution.

[27]  M. Kimura.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences , 1980, Journal of Molecular Evolution.