Dynamic distribution of gut microbiota during embryonic development in chicken

[1]  P. Rosenstiel,et al.  The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult Life , 2019, bioRxiv.

[2]  Sang-Won Lee,et al.  Characterization of microbial communities in the chicken oviduct and the origin of chicken embryo gut microbiota , 2019, Scientific Reports.

[3]  T. Woyengo,et al.  Gut Microbial Dynamics during Conventionalization of Germfree Chicken , 2019, mSphere.

[4]  R. Knight,et al.  Role of the microbiome in human development , 2019, Gut.

[5]  A. Jumpponen,et al.  The avian gut microbiota: community, physiology and function in wild birds , 2018, Journal of Avian Biology.

[6]  K. Kohl,et al.  Environmental temperature alters the digestive performance and gut microbiota of a terrestrial amphibian , 2018, Journal of Experimental Biology.

[7]  Wancai Yang,et al.  The Dynamic Changes of Gut Microbiota in Muc2 Deficient Mice , 2018, International journal of molecular sciences.

[8]  Zhiyuan Yao,et al.  Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota , 2018, AMB Express.

[9]  V. Clavijo,et al.  The gastrointestinal microbiome and its association with the control of pathogens in broiler chicken production: A review , 2017, Poultry science.

[10]  M. Lawson,et al.  Host‐microbe interaction in the gastrointestinal tract , 2017, Environmental microbiology.

[11]  H. Meng,et al.  Inheritance and Establishment of Gut Microbiota in Chickens , 2017, Front. Microbiol..

[12]  J. Nakayama,et al.  Development of the gut microbiota in infancy and its impact on health in later life. , 2017, Allergology international : official journal of the Japanese Society of Allergology.

[13]  E. Balskus,et al.  Chemical transformation of xenobiotics by the human gut microbiota , 2017, Science.

[14]  N. Juge,et al.  Introduction to the human gut microbiota , 2017, The Biochemical journal.

[15]  G. Kulkarni,et al.  Multilocus sequence typing of Ochrobactrum spp. isolated from gastric niche. , 2017, Journal of infection and public health.

[16]  M. Wagner,et al.  Age-Related Differences in the Luminal and Mucosa-Associated Gut Microbiome of Broiler Chickens and Shifts Associated with Campylobacter jejuni Infection , 2016, Front. Cell. Infect. Microbiol..

[17]  R. Zijlstra,et al.  The role of gut microbiota in the health and disease of pigs , 2016 .

[18]  S. Boytsov,et al.  Association between the gut microbiota and diet: Fetal life, early childhood, and further life. , 2016, Nutrition.

[19]  Philip Rosenstiel,et al.  The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model , 2016, BMC Biology.

[20]  S. Salminen,et al.  Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid , 2016, Scientific Reports.

[21]  R. Ley Gut microbiota in 2015: Prevotella in the gut: choose carefully , 2016, Nature Reviews Gastroenterology &Hepatology.

[22]  J. C. Ellis,et al.  Development of the Chick Microbiome: How Early Exposure Influences Future Microbial Diversity , 2016, Front. Vet. Sci..

[23]  F. Bäckhed,et al.  Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella. , 2015, Cell metabolism.

[24]  A. Kozyrskyj,et al.  Microbial programming of health and disease starts during fetal life. , 2015, Birth defects research. Part C, Embryo today : reviews.

[25]  Timothy L. Tickle,et al.  Compact graphical representation of phylogenetic data and metadata with GraPhlAn , 2015, PeerJ.

[26]  Knut Rudi,et al.  The composition of the gut microbiota throughout life, with an emphasis on early life , 2015, Microbial ecology in health and disease.

[27]  V. Young,et al.  The gut microbiome in health and in disease , 2015, Current opinion in gastroenterology.

[28]  Anders F. Andersson,et al.  Low Gut Microbiota Diversity in Early Infancy Precedes Asthma at School Age , 2015, Pediatrics.

[29]  M. Binek,et al.  Chicken intestinal microbiota function with a special emphasis on the role of probiotic bacteria. , 2014, Polish journal of veterinary sciences.

[30]  J. Petrosino,et al.  The Placenta Harbors a Unique Microbiome , 2014, Science Translational Medicine.

[31]  C. Constantinidou,et al.  Extensive Microbial and Functional Diversity within the Chicken Cecal Microbiome , 2014, PloS one.

[32]  E. Rosenberg,et al.  The Hologenome Concept: Human, Animal and Plant Microbiota , 2014, Springer International Publishing.

[33]  Zhongtang Yu,et al.  Intestinal microbiome of poultry and its interaction with host and diet , 2014, Gut microbes.

[34]  Susumu Goto,et al.  Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..

[35]  Jesse R. Zaneveld,et al.  Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences , 2013, Nature Biotechnology.

[36]  S. Bordenstein,et al.  Mom Knows Best: The Universality of Maternal Microbial Transmission , 2013, PLoS biology.

[37]  Natalia Ivanova,et al.  Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites , 2013, PloS one.

[38]  S. Wei,et al.  Bacterial census of poultry intestinal microbiome. , 2013, Poultry science.

[39]  G. Wang,et al.  Quantitative Genetic Background of the Host Influences Gut Microbiomes in Chickens , 2013, Scientific Reports.

[40]  W. Walker,et al.  The role of gut microbiota in programming the immune phenotype , 2013, Journal of Developmental Origins of Health and Disease.

[41]  Nicholas A. Bokulich,et al.  Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing , 2012, Nature Methods.

[42]  S. Sharif,et al.  Differential cytokine expression in T-cell subsets of chicken caecal tonsils co-cultured with three species of Lactobacillus. , 2012, Beneficial microbes.

[43]  J. Clemente,et al.  Human gut microbiome viewed across age and geography , 2012, Nature.

[44]  Hongyu Zhang,et al.  Isolation and Identification of Cellulolytic Bacteria from the Gut of Holotrichia parallela Larvae (Coleoptera: Scarabaeidae) , 2012, International journal of molecular sciences.

[45]  D. Warton,et al.  Distance‐based multivariate analyses confound location and dispersion effects , 2012 .

[46]  M. Clark,et al.  Beyond maternal effects in birds: responses of the embryo to the environment. , 2011, Integrative and comparative biology.

[47]  C. Huttenhower,et al.  Metagenomic biomarker discovery and explanation , 2011, Genome Biology.

[48]  B. Haas,et al.  Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. , 2011, Genome research.

[49]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[50]  Robert G. Beiko,et al.  Identifying biologically relevant differences between metagenomic communities , 2010, Bioinform..

[51]  R. Wall,et al.  Role of Gut Microbiota in Early Infant Development , 2009, Clinical medicine. Pediatrics.

[52]  B. Roe,et al.  A core gut microbiome in obese and lean twins , 2008, Nature.

[53]  M. Dharne,et al.  Isolation of urease-positive Ochrobactrum intermedium in the stomach of a non-ulcer dyspeptic patient from north India. , 2008, Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

[54]  K. Arikawa,et al.  Influence of Lactic Acid Bacteria on Longevity of Caenorhabditis elegans and Host Defense against Salmonella enterica Serovar Enteritidis , 2007, Applied and Environmental Microbiology.

[55]  Daniel B. DiGiulio,et al.  Development of the Human Infant Intestinal Microbiota , 2007, PLoS biology.

[56]  P. A. van den Brandt,et al.  Factors Influencing the Composition of the Intestinal Microbiota in Early Infancy , 2006, Pediatrics.

[57]  Eoin L. Brodie,et al.  Greengenes: Chimera-checked 16S rRNA gene database and workbench compatible in ARB , 2006 .

[58]  J. Fry,et al.  Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes'. , 2005, International journal of systematic and evolutionary microbiology.

[59]  Anne Chao,et al.  Nonparametric prediction in species sampling , 2004 .

[60]  Anne-Lise Bjørke Monsen,et al.  Cobalamin status and its biochemical markers methylmalonic acid and homocysteine in different age groups from 4 days to 19 years. , 2003, Clinical chemistry.

[61]  R. Forster,et al.  Diversity and phylogenetic analysis of bacteria in the mucosa of chicken ceca and comparison with bacteria in the cecal lumen. , 2002, FEMS microbiology letters.

[62]  F. Sallusto,et al.  Origin, maturation and antigen presenting function of dendritic cells. , 1997, Current opinion in immunology.

[63]  Phillip D Zamore,et al.  Translational regulation in development , 1995, Cell.

[64]  K. R. Clarke,et al.  Non‐parametric multivariate analyses of changes in community structure , 1993 .

[65]  V. Hamburger,et al.  A series of normal stages in the development of the chick embryo , 1951, Journal of morphology.

[66]  Claude E. Shannon,et al.  The mathematical theory of communication , 1950 .

[67]  R. Bellairs,et al.  The Hen’s Egg and its Formation , 2014 .

[68]  Anton Z. Mindubayev,et al.  Biodegradation of xenobiotics , 2013 .

[69]  S. Salzberg,et al.  FLASH: fast length adjustment of short reads to improve genome assemblies , 2011, Bioinform..

[70]  S. Fetzner Biodegradation of Xenobiotics , 2011 .

[71]  Sang Joon Kim,et al.  A Mathematical Theory of Communication , 2006 .

[72]  B. Kronvang,et al.  Encyclopedia of Life Support Systems (EOLSS) , 2005 .

[73]  C. Vleck,et al.  Metabolism and energetics of avian embryos. , 1987, The Journal of experimental zoology. Supplement : published under auspices of the American Society of Zoologists and the Division of Comparative Physiology and Biochemistry.

[74]  A. Chao Nonparametric estimation of the number of classes in a population , 1984 .

[75]  E. H. Simpson Measurement of Diversity , 1949, Nature.

[76]  Welch Bl THE GENERALIZATION OF ‘STUDENT'S’ PROBLEM WHEN SEVERAL DIFFERENT POPULATION VARLANCES ARE INVOLVED , 1947 .

[77]  B. L. Welch The generalisation of student's problems when several different population variances are involved. , 1947, Biometrika.