Arena3D: visualization of biological networks in 3D
暂无分享,去创建一个
Georgios A. Pavlopoulos | Venkata P. Satagopam | Evangelos Pafilis | Theodoros G. Soldatos | Reinhard Schneider | Seán I. O'Donoghue | S. O’Donoghue | Reinhard Schneider | V. Satagopam | E. Pafilis | G. Pavlopoulos
[1] Christian Blaschke,et al. Status of text-mining techniques applied to biomedical text. , 2006, Drug discovery today.
[2] J. MacQueen. Some methods for classification and analysis of multivariate observations , 1967 .
[3] Vladimir Batagelj,et al. Pajek - Program for Large Network Analysis , 1999 .
[4] Peer Bork,et al. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation , 2007, Bioinform..
[5] Christian von Mering,et al. STRING 7—recent developments in the integration and prediction of protein interactions , 2006, Nucleic Acids Res..
[6] Peer Bork,et al. Medusa: a simple tool for interaction graph analysis , 2005, Bioinform..
[7] Nizar N Batada,et al. CNplot: visualizing pre-clustered networks. , 2004, Bioinformatics.
[8] Delbert Dueck,et al. Clustering by Passing Messages Between Data Points , 2007, Science.
[9] M. Tyers,et al. Osprey: a network visualization system , 2003, Genome Biology.
[10] Ben Shneiderman,et al. Interactively Exploring Hierarchical Clustering Results , 2002, Computer.
[11] S. C. Johnson. Hierarchical clustering schemes , 1967, Psychometrika.
[12] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[13] Edward M. Reingold,et al. Graph drawing by force‐directed placement , 1991, Softw. Pract. Exp..
[14] Stijn van Dongen,et al. Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data , 2007, PLoS Comput. Biol..
[15] Gordon M. Crippen,et al. Distance Geometry and Molecular Conformation , 1988 .
[16] Sudhir Kumar,et al. MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers , 1994, Comput. Appl. Biosci..
[17] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[18] Cliff Joslyn,et al. The Gene Ontology Categorizer , 2004, ISMB/ECCB.
[19] Thure Etzold,et al. SRS - an indexing and retrieval tool for flat file data libraries , 1993, Comput. Appl. Biosci..
[20] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[21] R. D'Andrade. U-statistic hierarchical clustering , 1978 .
[22] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[23] Hiroaki Kitano,et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..
[24] Hagit Shatkay,et al. Hairpins in bookstacks: Information retrieval from biomedical text , 2005, Briefings Bioinform..
[25] M. Nei,et al. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. , 2007, Molecular biology and evolution.
[26] David James Sherman,et al. ProViz: protein interaction visualization and exploration , 2005, Bioinform..
[27] C. Sander,et al. The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data , 2004, Nature Biotechnology.
[28] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[29] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[30] Christopher J. Rawlings,et al. Graph-based analysis and visualization of experimental results with ONDEX , 2006, Bioinform..
[31] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[32] J. Pinney,et al. metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella , 2005, Nucleic acids research.