Virus-Inspired Membrane Encapsulation of DNA Nanostructures To Achieve In Vivo Stability

DNA nanotechnology enables engineering of molecular-scale devices with exquisite control over geometry and site-specific functionalization. This capability promises compelling advantages in advancing nanomedicine; nevertheless, instability in biological environments and innate immune activation remain as obstacles for in vivo application. Natural particle systems (i.e., viruses) have evolved mechanisms to maintain structural integrity and avoid immune recognition during infection, including encapsulation of their genome and protein capsid shell in a lipid envelope. Here we introduce virus-inspired enveloped DNA nanostructures as a design strategy for biomedical applications. Achieving a high yield of tightly wrapped unilamellar nanostructures, mimicking the morphology of enveloped virus particles, required precise control over the density of attached lipid conjugates and was achieved at 1 per ∼180 nm2. Envelopment of DNA nanostructures in PEGylated lipid bilayers conferred protection against nuclease digestion. Immune activation was decreased 2 orders of magnitude below controls, and pharmacokinetic bioavailability improved by a factor of 17. By establishing a design strategy suitable for biomedical applications, we have provided a platform for the engineering of sophisticated, translation-ready DNA nanodevices.

[1]  T. Noda Native Morphology of Influenza Virions , 2012, Front. Microbio..

[2]  H. Karanth,et al.  pH‐Sensitive liposomes‐principle and application in cancer therapy , 2007, The Journal of pharmacy and pharmacology.

[3]  Shawn M. Douglas,et al.  A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads , 2012, Science.

[4]  P. Rothemund Folding DNA to create nanoscale shapes and patterns , 2006, Nature.

[5]  S. Akira,et al.  The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors , 2010, Nature Immunology.

[6]  Kazuo Maruyama,et al.  Amphipathic polyethyleneglycols effectively prolong the circulation time of liposomes , 1990, FEBS letters.

[7]  J. Lucy,et al.  Action of Saponin on Biological Cell Membranes , 1962, Nature.

[8]  H. Pei,et al.  Self-assembled multivalent DNA nanostructures for noninvasive intracellular delivery of immunostimulatory CpG oligonucleotides. , 2011, ACS nano.

[9]  S. Boxer,et al.  Effects of linker sequences on vesicle fusion mediated by lipid-anchored DNA oligonucleotides , 2009, Proceedings of the National Academy of Sciences.

[10]  Omid C. Farokhzad,et al.  Nanoparticle-Aptamer Bioconjugates , 2004, Cancer Research.

[11]  M. Bawendi,et al.  Renal clearance of quantum dots , 2007, Nature Biotechnology.

[12]  T. G. Martin,et al.  Synthetic Lipid Membrane Channels Formed by Designed DNA Nanostructures , 2012, Science.

[13]  Anusuya Banerjee,et al.  Controlled release of encapsulated cargo from a DNA icosahedron using a chemical trigger. , 2013, Angewandte Chemie.

[14]  Dongsheng Liu,et al.  Light-driven conformational switch of i-motif DNA. , 2007, Angewandte Chemie.

[15]  Ji-Ho Park,et al.  Cooperative nanomaterial system to sensitize, target, and treat tumors , 2009, Proceedings of the National Academy of Sciences.

[16]  Chenxiang Lin,et al.  Purification of DNA-origami nanostructures by rate-zonal centrifugation , 2012, Nucleic acids research.

[17]  Shawn M. Douglas,et al.  Self-assembly of DNA into nanoscale three-dimensional shapes , 2009, Nature.

[18]  Erkki Ruoslahti,et al.  Nanocrystal targeting in vivo , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[19]  A. Bangham,et al.  Action of Saponin on Biological Cell Membranes , 1962, Nature.

[20]  Shawn M. Douglas,et al.  Folding DNA into Twisted and Curved Nanoscale Shapes , 2009, Science.

[21]  Daniel G. Anderson,et al.  Molecularly Self-Assembled Nucleic Acid Nanoparticles for Targeted In Vivo siRNA Delivery , 2012, Nature nanotechnology.

[22]  Neetu Singh,et al.  Nanoparticles that communicate in vivo to amplify tumour targeting. , 2011, Nature materials.

[23]  N. Seeman,et al.  Six-helix bundles designed from DNA. , 2005, Nano letters.

[24]  T. Yasuda,et al.  Measurement of deoxyribonuclease I activity in human tissues and body fluids by a single radial enzyme-diffusion method. , 1993, Clinical chemistry.

[25]  Adam H. Marblestone,et al.  Rapid prototyping of 3D DNA-origami shapes with caDNAno , 2009, Nucleic acids research.

[26]  V. P. Whittaker,et al.  Negatively Stained Lipoprotein Membranes , 1963, Nature.

[27]  Dennis E Discher,et al.  Minimal " Self " Peptides That Inhibit Phagocytic Clearance and Enhance Delivery of Nanoparticles References and Notes , 2022 .

[28]  Milan N. Stojanovic,et al.  Autonomous Molecular Cascades for Evaluation of Cell Surfaces , 2013, Nature nanotechnology.

[29]  Shawn M. Douglas,et al.  DNA-nanotube-induced alignment of membrane proteins for NMR structure determination , 2007, Proceedings of the National Academy of Sciences.

[30]  V. Birkedal,et al.  Temperature-controlled encapsulation and release of an active enzyme in the cavity of a self-assembled DNA nanocage. , 2013, ACS nano.

[31]  Tim Liedl,et al.  Cellular immunostimulation by CpG-sequence-coated DNA origami structures. , 2011, ACS nano.

[32]  D. Meldrum,et al.  Stability of DNA origami nanoarrays in cell lysate. , 2011, Nano letters.

[33]  A method to study in vivo stability of DNA nanostructures☆ , 2013, Methods.

[34]  N. Seeman Nanomaterials based on DNA. , 2010, Annual review of biochemistry.

[35]  D. Pressman,et al.  Plasma and Blood Volumes of Mouse Organs, As Determined with Radioactive Iodoproteins.∗ , 1950, Proceedings of the Society for Experimental Biology and Medicine. Society for Experimental Biology and Medicine.

[36]  Matt A. King,et al.  Three-Dimensional Structures Self-Assembled from DNA Bricks , 2012 .

[37]  S. Lesieur,et al.  Vesicle reconstitution from lipid-detergent mixed micelles. , 2000, Biochimica et biophysica acta.

[38]  W. Chan,et al.  In vivo assembly of nanoparticle components to improve targeted cancer imaging , 2010, Proceedings of the National Academy of Sciences.

[39]  Warren C W Chan,et al.  Mediating tumor targeting efficiency of nanoparticles through design. , 2009, Nano letters.