Discovery and Analyses of Caulimovirid-like Sequences in Upland Cotton (Gossypium hirsutum)
暂无分享,去创建一个
[1] R. Kemerait,et al. Cotton leafroll dwarf disease: An enigmatic viral disease in cotton , 2023, Molecular plant pathology.
[2] T. Allen,et al. First report of pothos latent virus infecting upland cotton (Gossypium hirsutum) in the United States. , 2022, Plant disease.
[3] C. Vicient,et al. Genome-wide identification of Reverse Transcriptase domains of recently inserted endogenous plant pararetrovirus (Caulimoviridae) , 2022, Frontiers in Plant Science.
[4] Maojun Wang,et al. Genomic innovation and regulatory rewiring during evolution of the cotton genus Gossypium , 2022, Nature Genetics.
[5] A. Valli,et al. Rearranged Endogenized Plant Pararetroviruses as Evidence of Heritable RNA-based Immunity , 2022, Molecular biology and evolution.
[6] M. Van Montagu,et al. Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons , 2022, Proceedings of the National Academy of Sciences of the United States of America.
[7] L. Nemchinov,et al. Genome-wide identification of endogenous viral sequences in alfalfa (Medicago sativa L.) , 2021, Virology journal.
[8] Florian Maumus,et al. Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena) , 2021, Frontiers in Plant Science.
[9] P. Bork,et al. Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation , 2021, Nucleic Acids Res..
[10] J. Dunwell,et al. Identification and distribution of novel badnaviral sequences integrated in the genome of cacao (Theobroma cacao) , 2021, Scientific Reports.
[11] Kathrin M. Seibt,et al. Broken, silent, and in hiding: Tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris). , 2021, Annals of botany.
[12] Guanjing Hu,et al. Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton , 2021, Advanced science.
[13] R. Hull,et al. ICTV Virus Taxonomy Profile: Caulimoviridae , 2020, The Journal of general virology.
[14] Don C. Jones,et al. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement , 2020, Nature Genetics.
[15] R. Nichols,et al. First Report of Cotton Leafroll Dwarf Virus in Upland Cotton (Gossypium hirsutum) in Mississippi , 2019, Plant Disease.
[16] Tianzhen Zhang,et al. Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton , 2019, Nature Genetics.
[17] Xiuxin Deng,et al. Endogenous pararetrovirus sequences are widely present in Citrinae genomes. , 2019, Virus research.
[18] Mark A. Arick,et al. Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing , 2018, Genome biology and evolution.
[19] Kanae Yamada,et al. Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution , 2018, Genome biology and evolution.
[20] E. Koonin,et al. Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses , 2018, Journal of Virology.
[21] Guan-Zhu Han,et al. Euphyllophyte Paleoviruses Illuminate Hidden Diversity and Macroevolutionary Mode of Caulimoviridae , 2018, Journal of Virology.
[22] Florian Maumus,et al. Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae , 2017, Scientific Reports.
[23] A. von Haeseler,et al. UFBoot2: Improving the Ultrafast Bootstrap Approximation , 2017, bioRxiv.
[24] Thomas K. F. Wong,et al. ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates , 2017, Nature Methods.
[25] J. Wendel,et al. A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae) , 2017, Systematic Botany.
[26] J. Wendel,et al. Taxonomy and Evolution of the Cotton Genus, Gossypium , 2015 .
[27] Don C. Jones,et al. CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research , 2015, Plants.
[28] M. Zytnicki,et al. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution , 2014, Nature Communications.
[29] A. von Haeseler,et al. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.
[30] M. Chabannes,et al. Endogenous pararetroviruses--a reservoir of virus infection in plants. , 2013, Current opinion in virology.
[31] V. Barbe,et al. Three Infectious Viral Species Lying in Wait in the Banana Genome , 2013, Journal of Virology.
[32] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[33] A. Katzourakis,et al. Paleovirology and virally derived immunity. , 2012, Trends in ecology & evolution.
[34] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[35] J. Wendel,et al. Assessing the monophyly of polyploid Gossypium species , 2012, Plant Systematics and Evolution.
[36] W. Sakamoto,et al. Widespread Endogenization of Genome Sequences of Non-Retroviral RNA Viruses into Plant Genomes , 2011, PLoS pathogens.
[37] V. Dolja,et al. Retention of the virus-derived sequences in the nuclear genome of grapevine as a potential pathway to virus resistance , 2009, Biology Direct.
[38] Toni Gabaldón,et al. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses , 2009, Bioinform..
[39] R. Weiss. The discovery of endogenous retroviruses , 2006, Retrovirology.
[40] R. Corrêa,et al. Molecular characterization of a virus from the family Luteoviridae associated with cotton blue disease , 2005, Archives of Virology.
[41] I. Sela,et al. Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: evidence for recombination between viral and host RNAs. , 2005, Virology.
[42] M. Matzke,et al. A Distinct Endogenous Pararetrovirus Family in Nicotiana tomentosiformis, a Diploid Progenitor of Polyploid Tobacco1[w] , 2004, Plant Physiology.
[43] T. Hohn,et al. Induction of infectious petunia vein clearing (pararetro) virus from endogenous provirus in petunia , 2003, The EMBO journal.
[44] R. Briddon,et al. Geminivirus disease complexes: an emerging threat. , 2003, Trends in plant science.
[45] M. Matzke,et al. Endogenous viral sequences and their potential contribution to heritable virus resistance in plants , 2002, The EMBO journal.
[46] M. Matzke,et al. Integrated pararetroviral sequences define a unique class of dispersed repetitive DNA in plants. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[47] M. Witty,et al. Integration of multiple repeats of geminiviral DNA into the nuclear genome of tobacco during evolution. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[48] A. Paterson,et al. The distribution of Gossypium hirsutum chromatin in G. barbadense germ plasm: molecular analysis of introgressive plant breeding , 1995, Theoretical and Applied Genetics.
[49] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[50] J. Wendel,et al. Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack , 2014, Genetic Resources and Crop Evolution.
[51] J. Wendel,et al. Ty1-copia-retrotransposon Behavior in a Polyploid Cotton , 2004, Chromosome Research.
[52] B. Lockhart,et al. Viral sequences integrated into plant genomes. , 2002, Annual review of phytopathology.
[53] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.