1-D test-bed calibration of a 3-D Lake Superior biogeochemical model

Complex circulation models are commonly coupled with ecosystem models to characterize large-scale biogeochemical processes. While the reliability of these models is highly dependent upon accurate parameterization, the large computational expense associated with general circulation models generally prohibits the application of formal parameter estimation techniques to ecological model components in situ. Here, a 1-D model, driven by 3-D model output, is developed to provide an efficient test-bed environment in which model parameters are estimated using a Markov Chain Monte Carlo (MCMC) approach. The spatial and temporal uncertainty of model predictions due to parameter estimation error is quantified. A simple ecosystem model is calibrated for Lake Superior that is capable of reproducing most of the major features in observed concentration profiles of nutrients, dissolved organic carbon, and chlorophyll at the calibration location in the western basin of the lake. However, the optimized model is unable to reconcile observations of these variables with measured primary productivity during the stratified period. The test-bed calibrated parameters perform well in the 3-D framework at off-shore locations throughout the lake, and result in a 43% improvement in fit to validation data over manually adjusted parameters. The test-bed approach presented here represents a practical approach to the calibration of 3-D coupled models and has the potential to significantly improve model performance.

[1]  R. Assel Classification of Annual Great Lakes Ice Cycles: Winters of 1973–2002* , 2005 .

[2]  Barbara A. Adams-Vanharn,et al.  Evaluation of the current state of mechanistic aquatic biogeochemical modeling: citation analysis and future perspectives. , 2006, Environmental science & technology.

[3]  David M. Glover,et al.  A new coupled, one-dimensional biological-physical model for the upper ocean: Applications to the JGOFS Bermuda Atlantic Time-series Study (BATS) site , 1996 .

[4]  Kenneth L. Denman,et al.  Modelling planktonic ecosystems: parameterizing complexity , 2003 .

[5]  Benjamin Smith,et al.  Changes in European ecosystem productivity and carbon balance driven by regional climate model output , 2007 .

[6]  Richard P. Barbiero,et al.  The Deep Chlorophyll Maximum in Lake Superior , 2004 .

[7]  Andreas Oschlies,et al.  On the Use of Data Assimilation in Biogeochemical Modelling , 2006 .

[8]  Petra Döll,et al.  Impact of Climate Change and Variability on Irrigation Requirements: A Global Perspective , 2002 .

[9]  Galen A. McKinley,et al.  Mechanisms of air‐sea CO2 flux variability in the equatorial Pacific and the North Atlantic , 2004 .

[10]  Carolien Kroeze,et al.  Global river nutrient export: A scenario analysis of past and future trends , 2010 .

[11]  Carl F. Cerco,et al.  Three‐Dimensional Eutrophication Model of Chesapeake Bay , 1993 .

[12]  Andreas Oschlies,et al.  Chain model of phytoplankton P, N and light colimitation , 2009 .

[13]  Mingshun Jiang,et al.  A model study of the coupled biological and physical dynamics in Lake Michigan , 2002 .

[14]  Stephanie Dutkiewicz,et al.  Interactions of the iron and phosphorus cycles: A three‐dimensional model study , 2005 .

[15]  M. Fuentes Approximate Likelihood for Large Irregularly Spaced Spatial Data , 2007, Journal of the American Statistical Association.

[16]  Heikki Haario,et al.  DRAM: Efficient adaptive MCMC , 2006, Stat. Comput..

[17]  Craig A. Stow,et al.  Eutrophication risk assessment using Bayesian calibration of process-based models : application to a mesotrophic lake , 2007 .

[18]  Richard J. Geider,et al.  A dynamic regulatory model of phytoplanktonic acclimation to light, nutrients, and temperature , 1998 .

[19]  F. Rosa,et al.  In situ measurement of the settling velocity of organic carbon particles and 10 species of phytoplankton , 1980 .

[20]  K. Sand‐Jensen,et al.  Light attenuation and photosynthesis of aquatic plant communities , 1998 .

[21]  Chin H. Wu,et al.  General circulation of Lake Superior: Mean, variability, and trends from 1979 to 2006 , 2010 .

[22]  Corinne Le Quéré,et al.  North Pacific carbon cycle response to climate variability on seasonal to decadal timescales , 2006 .

[23]  Marjorie A. M. Friedrichs,et al.  Ecosystem model complexity versus physical forcing: Quantification of their relative impact with assimilated Arabian Sea data , 2006 .

[24]  Sallie W. Chisholm,et al.  Emergent Biogeography of Microbial Communities in a Model Ocean , 2007, Science.

[25]  Weitao Zhang,et al.  Bayesian calibration of mechanistic aquatic biogeochemical models and benefits for environmental management , 2008 .

[26]  M. Stein Space–Time Covariance Functions , 2005 .

[27]  Scott C. Doney,et al.  Assessment of skill and portability in regional marine biogeochemical models : Role of multiple planktonic groups , 2007 .

[28]  L. Perelman,et al.  A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers , 1997 .

[29]  Ankur R. Desai,et al.  Stronger winds over a large lake in response to weakening air-to-lake temperature gradient , 2009 .

[30]  L. Perelman,et al.  Hydrostatic, quasi‐hydrostatic, and nonhydrostatic ocean modeling , 1997 .

[31]  M. Follows,et al.  Interannual variability of air‐sea O2 fluxes and the determination of CO2 sinks using atmospheric O2/N2 , 2003 .

[32]  David D. Parrish,et al.  NORTH AMERICAN REGIONAL REANALYSIS , 2006 .

[33]  I. C. Prentice,et al.  Evaluation of the terrestrial carbon cycle, future plant geography and climate‐carbon cycle feedbacks using five Dynamic Global Vegetation Models (DGVMs) , 2008 .

[34]  Andreas Oschlies,et al.  Simultaneous data-based optimization of a 1D-ecosystem model at three locations in the North Atlantic: Part I— Method and parameter estimates , 2003 .

[35]  Sašo Džeroski,et al.  Constructing a library of domain knowledge for automated modelling of aquatic ecosystems , 2006 .

[36]  Peter G. Challenor,et al.  A Markov chain Monte Carlo method for estimation and assimilation into models , 1997 .

[37]  M. Auer,et al.  Selected Features of the Distribution of Chlorophyll along the Southern Shore of Lake Superior , 2004 .

[38]  D. Apul,et al.  Carbon cycling in Lake Superior , 2005 .

[39]  C. Vörösmarty,et al.  Global water resources: vulnerability from climate change and population growth. , 2000, Science.

[40]  Y. Yamanaka,et al.  Quantitative comparison of photoacclimation models for marine phytoplankton , 2007 .

[41]  C. P. McDonald IMPROVING THE RELIABILITY OF AQUATIC BIOGEOCHEMICAL MODELS: INTEGRATING INFORMATION AND OPTIMIZING COMPLEXITY , 2010 .

[42]  Per Ask,et al.  Light limitation of nutrient-poor lake ecosystems , 2009, Nature.

[43]  S. Chapra Surface Water-Quality Modeling , 1996 .

[44]  David J. Schwab,et al.  Mean Circulation in the Great Lakes , 1999 .

[45]  Lawrence F. Shampine,et al.  The MATLAB ODE Suite , 1997, SIAM J. Sci. Comput..

[46]  Robert W. Sterner,et al.  In situ-Measured Primary Production in Lake Superior , 2010 .

[47]  Andreas Oschlies,et al.  Basin-scale performance of a locally optimized marine ecosystem model , 2005 .

[48]  K. Rose,et al.  Application of an automatic approach to calibrate the NEMURO nutrient–phytoplankton–zooplankton food web model in the Oyashio region , 2010 .

[49]  B. Biddanda,et al.  Small Players, Large Role: Microbial Influence on Biogeochemical Processes in Pelagic Aquatic Ecosystems , 2002, Ecosystems.

[50]  George B. Arhonditsis,et al.  Structural changes in lake functioning induced from nutrient loading and climate variability , 2009 .

[51]  Cory P. McDonald,et al.  Using a model selection criterion to identify appropriate complexity in aquatic biogeochemical models , 2010 .

[52]  Tsutomu Ikeda,et al.  Biogeochemical fluxes through mesozooplankton , 2006 .

[53]  M. Friedrichs Assimilation of JGOFS EqPac and SeaWiFS data into a marine ecosystem model of the Central Equatorial Pacific Ocean , 2001 .

[54]  M. Follows,et al.  Carbon dioxide and oxygen fluxes in the Southern Ocean: Mechanisms of interannual variability , 2006 .

[55]  Katharina D. Six,et al.  Effects of plankton dynamics on seasonal carbon fluxes in an ocean general circulation model , 1996 .