Epigenetics of embryonic stem cells.
暂无分享,去创建一个
[1] H. Deng,et al. Pluripotin Combined with Leukemia Inhibitory Factor Greatly Promotes the Derivation of Embryonic Stem Cell Lines from Refractory Strains , 2009, Stem cells.
[2] Jian-Bing Fan,et al. Human embryonic stem cells have a unique epigenetic signature. , 2006, Genome research.
[3] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[4] M. Vidal,et al. Role of histone H2A ubiquitination in Polycomb silencing , 2004, Nature.
[5] T P Fleming,et al. A quantitative analysis of cell allocation to trophectoderm and inner cell mass in the mouse blastocyst. , 1987, Developmental biology.
[6] P. Lansdorp,et al. The Mammalian SIR2α Protein Has a Role in Embryogenesis and Gametogenesis , 2003, Molecular and Cellular Biology.
[7] Paul Tempst,et al. Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. , 2005, Molecular cell.
[8] H. Willard,et al. Chromatin of the Barr body: histone and non-histone proteins associated with or excluded from the inactive X chromosome. , 2003, Human molecular genetics.
[9] Cassandra R. Farthing,et al. Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes , 2008, PLoS genetics.
[10] Ronen Marmorstein,et al. Structural basis for histone and phosphohistone binding by the GCN5 histone acetyltransferase. , 2003, Molecular cell.
[11] L. Guarente,et al. The Sir2 family of protein deacetylases. , 2004, Annual review of biochemistry.
[12] C. Disteche,et al. Dosage compensation in mammals: fine-tuning the expression of the X chromosome. , 2006, Genes & development.
[13] R. Jaenisch,et al. Loss of methylation activates Xist in somatic but not in embryonic cells. , 1995, Genes & development.
[14] D. Aswad,et al. Methylation of histone H3 by coactivator-associated arginine methyltransferase 1. , 2001, Biochemistry.
[15] D. Reinberg,et al. Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27. , 2004, Genes & development.
[16] M. Hottiger,et al. Nuclear ADP-Ribosylation Reactions in Mammalian Cells: Where Are We Today and Where Are We Going? , 2006, Microbiology and Molecular Biology Reviews.
[17] A. Jeltsch,et al. Two substrates are better than one: dual specificities for Dnmt2 methyltransferases. , 2006, Trends in biochemical sciences.
[18] David Sinclair,et al. Sirtuins in mammals: insights into their biological function. , 2007, The Biochemical journal.
[19] Michael T. McManus,et al. Chd1 regulates open chromatin and pluripotency of embryonic stem cells , 2009, Nature.
[20] D. Reinberg,et al. SIRT1 regulates the histone methyl-transferase SUV39H1 during heterochromatin formation , 2007, Nature.
[21] Stuart Thomson,et al. MSK2 and MSK1 mediate the mitogen‐ and stress‐induced phosphorylation of histone H3 and HMG‐14 , 2003, The EMBO journal.
[22] K. Brennand,et al. Reprogramming of Pancreatic β Cells into Induced Pluripotent Stem Cells , 2008, Current Biology.
[23] Brian D. Strahl,et al. A nucleosomal function for IκB kinase-α in NF-κB-dependent gene expression , 2003, Nature.
[24] J. Hyllner,et al. Human embryonic stem cell technologies and drug discovery , 2009, Journal of cellular physiology.
[25] J. Utikal,et al. Induced Pluripotent Stem Cells Generated Without Viral Integration , 2008, Science.
[26] A. V. van Kuilenburg,et al. Histone deacetylases (HDACs): characterization of the classical HDAC family. , 2003, The Biochemical journal.
[27] Y. Shiba,et al. Cardiac applications for human pluripotent stem cells. , 2009, Current pharmaceutical design.
[28] S. Khorasanizadeh. The Nucleosome From Genomic Organization to Genomic Regulation , 2004, Cell.
[29] Lee E. Edsall,et al. Human DNA methylomes at base resolution show widespread epigenomic differences , 2009, Nature.
[30] Y. Schwartz,et al. Polycomb silencing blocks transcription initiation. , 2004, Molecular cell.
[31] C. Niehrs. Active DNA demethylation and DNA repair. , 2009, Differentiation; research in biological diversity.
[32] M. Zernicka-Goetz,et al. Histone arginine methylation regulates pluripotency in the early mouse embryo , 2007, Nature.
[33] Saswati Banerjee,et al. DNA methyltransferase inhibition induces mouse embryonic stem cell differentiation into endothelial cells. , 2010, Experimental cell research.
[34] Michael B. Stadler,et al. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome , 2007, Nature Genetics.
[35] S. Baylin,et al. DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci , 2000, Nature Genetics.
[36] I. Albert,et al. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome , 2007, Nature.
[37] Kristian Helin,et al. The emerging functions of histone demethylases. , 2008, Current opinion in genetics & development.
[38] M. Surani,et al. Germ Cell Specification in Mice , 2007, Science.
[39] S. Jacobsen,et al. DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis , 2002, Cell.
[40] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[41] P. Varga-Weisz,et al. The regulation of ATP-dependent nucleosome remodelling factors. , 2007, Mutation research.
[42] D. Reinberg,et al. Composition and histone substrates of polycomb repressive group complexes change during cellular differentiation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[43] J. Thomson,et al. Embryonic stem cell lines derived from human blastocysts. , 1998, Science.
[44] Arend Sidow,et al. Jarid2/Jumonji Coordinates Control of PRC2 Enzymatic Activity and Target Gene Occupancy in Pluripotent Cells , 2009, Cell.
[45] D. Haber,et al. DNA Methyltransferases Dnmt3a and Dnmt3b Are Essential for De Novo Methylation and Mammalian Development , 1999, Cell.
[46] P. Barlow,et al. DNA synthesis in the preimplantation mouse embryo. , 1972, Journal of embryology and experimental morphology.
[47] Jennifer Nichols,et al. Promotion of Reprogramming to Ground State Pluripotency by Signal Inhibition , 2008, PLoS biology.
[48] N. Benvenisty,et al. The immunogenicity of human embryonic stem-derived cells. , 2004, Trends in biotechnology.
[49] S. Oh,et al. Generation, culture, and differentiation of human embryonic stem cells for therapeutic applications. , 2006, Molecular therapy : the journal of the American Society of Gene Therapy.
[50] J. Davie,et al. Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. , 2001, Genes & development.
[51] W. Reik,et al. Active demethylation of the paternal genome in the mouse zygote , 2000, Current Biology.
[52] T. Bestor,et al. Sex-specific exons control DNA methyltransferase in mammalian germ cells. , 1998, Development.
[53] Xi Chen,et al. Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells. , 2007, Genes & development.
[54] R. Guigó,et al. The histone variant macroH2A is an epigenetic regulator of key developmental genes , 2009, Nature Structural &Molecular Biology.
[55] Jun Qin,et al. Nanog and Oct4 associate with unique transcriptional repression complexes in embryonic stem cells , 2008, Nature Cell Biology.
[56] H. Ng,et al. Human DNA-(cytosine-5) methyltransferase-PCNA complex as a target for p21WAF1. , 1997, Science.
[57] Tom Misteli,et al. Chromatin in pluripotent embryonic stem cells and differentiation , 2006, Nature Reviews Molecular Cell Biology.
[58] Danny Reinberg,et al. Human but Not Yeast CHD1 Binds Directly and Selectively to Histone H3 Methylated at Lysine 4 via Its Tandem Chromodomains* , 2005, Journal of Biological Chemistry.
[59] M. Fraga,et al. Cancer Genes Hypermethylated in Human Embryonic Stem Cells , 2008, PloS one.
[60] K. Helin,et al. Coordinated regulation of transcriptional repression by the RBP2 H3K4 demethylase and Polycomb-Repressive Complex 2. , 2008, Genes & development.
[61] D. Sterner,et al. Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications. , 2006, Genes & development.
[62] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[63] Richard A Young,et al. Global and Hox-specific roles for the MLL1 methyltransferase. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[64] R J Roberts,et al. Recombinant Human DNA (Cytosine-5) Methyltransferase , 1999, The Journal of Biological Chemistry.
[65] Megan F. Cole,et al. Core Transcriptional Regulatory Circuitry in Human Embryonic Stem Cells , 2005, Cell.
[66] T. Takeuchi,et al. Roles of jumonji and jumonji family genes in chromatin regulation and development , 2006, Developmental dynamics : an official publication of the American Association of Anatomists.
[67] Geoff Kelly,et al. Specificity and mechanism of the histone methyltransferase Pr-Set7. , 2005, Genes & development.
[68] M. Fraga,et al. Epigenetic Mechanisms Regulate MHC and Antigen Processing Molecules in Human Embryonic and Induced Pluripotent Stem Cells , 2010, PloS one.
[69] M. Pazin,et al. Histone H4-K16 Acetylation Controls Chromatin Structure and Protein Interactions , 2006, Science.
[70] Brian D. Strahl,et al. Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1 , 2001, Current Biology.
[71] P. Chambon,et al. Electron microscopic and biochemical evidence that chromatin structure is a repeating unit , 1975, Cell.
[72] Martin J Aryee,et al. Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts , 2009, Nature Genetics.
[73] Stuart L. Schreiber,et al. Active genes are tri-methylated at K4 of histone H3 , 2002, Nature.
[74] I. Talianidis,et al. Histone modifications defining active genes persist after transcriptional and mitotic inactivation , 2005, The EMBO journal.
[75] Helmut Gernsheim,et al. W. H. Fox Talbot and the history of photography , 1977 .
[76] S. Yagi,et al. Epigenetic regulation of Nanog gene in embryonic stem and trophoblast stem cells , 2007, Genes to cells : devoted to molecular & cellular mechanisms.
[77] C. Wijmenga,et al. The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[78] E. Barry,et al. Epigenetic regulatory mechanisms during preimplantation development. , 2009, Birth defects research. Part C, Embryo today : reviews.
[79] C. Allis,et al. Histone and chromatin cross-talk. , 2003, Current opinion in cell biology.
[80] K. Hochedlinger,et al. Epigenetic reprogramming and induced pluripotency , 2009, Development.
[81] J. Zeitlinger,et al. Polycomb complexes repress developmental regulators in murine embryonic stem cells , 2006, Nature.
[82] B. Turner,et al. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations , 2006, Nature Genetics.
[83] Jun Qin,et al. N-CoR mediates DNA methylation-dependent repression through a methyl CpG binding protein Kaiso. , 2003, Molecular cell.
[84] Megan F. Cole,et al. Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells , 2006, Cell.
[85] S. Mujtaba,et al. Structure and acetyl-lysine recognition of the bromodomain , 2007, Oncogene.
[86] T. Bestor,et al. DNA (cytosine-5)-methyltransferases in mouse cells and tissues. Studies with a mechanism-based probe. , 1997, Journal of molecular biology.
[87] R. McKay,et al. Embryonic stem cell-derived glial precursors: a source of myelinating transplants. , 1999, Science.
[88] Christopher R. Vakoc,et al. DOT1L/KMT4 Recruitment and H3K79 Methylation Are Ubiquitously Coupled with Gene Transcription in Mammalian Cells , 2008, Molecular and Cellular Biology.
[89] K. Scheidtmann,et al. Phosphorylation of histone H3 at threonine 11 establishes a novel chromatin mark for transcriptional regulation , 2008, Nature Cell Biology.
[90] G. Daley,et al. Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming , 2009, Nature Biotechnology.
[91] D. Reinberg,et al. Human SirT1 interacts with histone H1 and promotes formation of facultative heterochromatin. , 2004, Molecular cell.
[92] Howard Cedar,et al. DNA methylation affects the formation of active chromatin , 1986, Cell.
[93] C. Langford,et al. CARM1 Is Required in Embryonic Stem Cells to Maintain Pluripotency and Resist Differentiation , 2009, Stem cells.
[94] T. Kerppola. Polycomb group complexes--many combinations, many functions. , 2009, Trends in cell biology.
[95] K. Mechtler,et al. 14‐3‐3 Proteins recognize a histone code at histone H3 and are required for transcriptional activation , 2008, The EMBO journal.
[96] Cyrus Martin,et al. The diverse functions of histone lysine methylation , 2005, Nature Reviews Molecular Cell Biology.
[97] M. Zofall,et al. High-Resolution Mapping of Changes in Histone-DNA Contacts of Nucleosomes Remodeled by ISW2 , 2002, Molecular and Cellular Biology.
[98] K. Helin,et al. Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease. , 2008, Genes & development.
[99] J. Mcdonald,et al. Transplanted embryonic stem cells survive, differentiate and promote recovery in injured rat spinal cord , 1999, Nature Medicine.
[100] T. Ichisaka,et al. Induction of Pluripotent Stem Cells from Adult Human Fibroblasts by Defined Factors , 2007, Cell.
[101] Colin A. Johnson,et al. Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex , 1998, Nature.
[102] Yi Zhang,et al. The functions of E(Z)/EZH2-mediated methylation of lysine 27 in histone H3. , 2004, Current opinion in genetics & development.
[103] Paul Tempst,et al. Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3. , 2004, Molecular cell.
[104] M. Scott. Vertebrate homeobox gene nomenclature , 1992, Cell.
[105] N. Benvenisty,et al. The tumorigenicity of human embryonic stem cells. , 2008, Advances in cancer research.
[106] Benjamin A. Garcia,et al. Regulation of HP1–chromatin binding by histone H3 methylation and phosphorylation , 2005, Nature.
[107] R. Krumlauf,et al. Hox codes and positional specification in vertebrate embryonic axes. , 1992, Annual review of cell biology.
[108] Tanja Waldmann,et al. HP1 Binds Specifically to Lys26-methylated Histone H1.4, whereas Simultaneous Ser27 Phosphorylation Blocks HP1 Binding* , 2005, Journal of Biological Chemistry.
[109] S. Hochi,et al. Active demethylation of paternal genome in mammalian zygotes. , 2009, The Journal of reproduction and development.
[110] Ioannis Xenarios,et al. Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases , 2002, Cell.
[111] S. Wolf. The protein arginine methyltransferase family: an update about function, new perspectives and the physiological role in humans , 2009, Cellular and Molecular Life Sciences.
[112] H. Zoghbi,et al. Rett syndrome and beyond: recurrent spontaneous and familial MECP2 mutations at CpG hotspots. , 1999, American journal of human genetics.
[113] M. Fraga,et al. The Polycomb group protein EZH2 directly controls DNA methylation , 2006, Nature.
[114] J. Gearhart. New Potential for Human Embryonic Stem Cells , 1998, Science.
[115] S. Henikoff,et al. Epigenetics, histone H3 variants, and the inheritance of chromatin states. , 2004, Cold Spring Harbor symposia on quantitative biology.
[116] R. Young,et al. H2AZ Is Enriched at Polycomb Complex Target Genes in ES Cells and Is Necessary for Lineage Commitment , 2008, Cell.
[117] S. Stice,et al. Neural differentiation of human embryonic stem cells , 2008, Journal of cellular biochemistry.
[118] Haico van Attikum,et al. The histone code at DNA breaks: a guide to repair? , 2005, Nature Reviews Molecular Cell Biology.
[119] Christopher J. Nelson,et al. Proline Isomerization of Histone H3 Regulates Lysine Methylation and Gene Expression , 2006, Cell.
[120] Maya Schuldiner,et al. Characterization of the expression of MHC proteins in human embryonic stem cells , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[121] E. Verdin,et al. Sirtuins: critical regulators at the crossroads between cancer and aging , 2007, Oncogene.
[122] Kristopher L. Nazor,et al. Adult mice generated from induced pluripotent stem cells , 2009, Nature.
[123] N. Benvenisty,et al. Human Embryonic Stem Cells and Their Differentiated Derivatives Are Less Susceptible to Immune Rejection Than Adult Cells , 2006, Stem cells.
[124] H. Sasaki,et al. Dynamic transition of Dnmt3b expression in mouse pre- and early post-implantation embryos. , 2009, Gene expression patterns : GEP.
[125] Tony Kouzarides,et al. The Methyl-CpG-binding Protein MeCP2 Links DNA Methylation to Histone Methylation* , 2003, The Journal of Biological Chemistry.
[126] D. Lees-Murdock,et al. DNA methylation reprogramming in the germ line. , 2008, Advances in experimental medicine and biology.
[127] Takashi Aoi,et al. Generation of Pluripotent Stem Cells from Adult Mouse Liver and Stomach Cells , 2008, Science.
[128] C. Costanzi,et al. Histone macroH2A1 is concentrated in the inactive X chromosome of female mammals , 1998, Nature.
[129] Eric S. Lander,et al. Dissecting direct reprogramming through integrative genomic analysis , 2008, Nature.
[130] Yi Zhang,et al. Structure of the Catalytic Domain of Human DOT1L, a Non-SET Domain Nucleosomal Histone Methyltransferase , 2003, Cell.
[131] T. Mikkelsen,et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells , 2008, Nature.
[132] W. Reik. Stability and flexibility of epigenetic gene regulation in mammalian development , 2007, Nature.
[133] S. Henikoff,et al. Genome-scale profiling of histone H3.3 replacement patterns , 2005, Nature Genetics.
[134] C. Allis,et al. Translating the Histone Code , 2001, Science.
[135] Sung-Hee Ahn,et al. Sterile 20 Kinase Phosphorylates Histone H2B at Serine 10 during Hydrogen Peroxide-Induced Apoptosis in S. cerevisiae , 2005, Cell.
[136] M. Bedford,et al. Arginine methylation at a glance , 2007, Journal of Cell Science.
[137] H. Waldmann,et al. Embryonic stem cell-derived tissues are immunogenic but their inherent immune privilege promotes the induction of tolerance , 2007, Proceedings of the National Academy of Sciences.
[138] Esteban Ballestar,et al. The impact of chromatin in human cancer: linking DNA methylation to gene silencing. , 2002, Carcinogenesis.
[139] R. Pedersen,et al. Clonal analysis of epiblast fate during germ layer formation in the mouse embryo. , 1991, Development.
[140] G. Dellgren,et al. Immunogenicity of human embryonic stem cells , 2007, Cell and Tissue Research.
[141] G. Churchill,et al. Characterization of human embryonic stem cell lines by the International Stem Cell Initiative , 2007, Nature Biotechnology.
[142] Dong Wook Han,et al. Generation of induced pluripotent stem cells using recombinant proteins. , 2009, Cell stem cell.