Biochemical and functional characterization of BLUF-type flavin-binding proteins of two species of cyanobacteria.

BLUF (a sensor of Blue-Light Using FAD) is a novel putative photoreceptor domain that is found in many bacteria and some eukaryotic algae. As found on genome analysis, certain cyanobacteria have BLUF proteins with a short C-terminal extension. As typical examples, Tll0078 from thermophilic Thermosynechococcus elongatus BP-1 and Slr1694 from mesophilic Synechocystis sp. PCC 6803 were comparatively studied. FAD of both proteins was hardly reduced by exogenous reductants or mediators except methylviologen but showed a typical spectral shift to a longer wavelength upon excitation with blue light. In particular, freshly prepared Tll0078 protein showed slow but reversible aggregation, indicative of light-induced conformational changes in the protein structure. Tll0078 is far more stable as to heat treatment than Slr1694, as judged from flavin fluorescence. The slr1694-disruptant showed phototactic motility away from the light source (negative phototaxis), while the wild type Synechocystis showed positive phototaxis toward the source. Yeast two-hybrid screening with slr1694 showed self-interaction of Slr1694 (PixD) with itself and interaction with a novel PatA-like response regulator, Slr1693 (PixE). These results were discussed in relation to the signaling mechanism of the "short" BLUF proteins in the regulation of cyanobacterial phototaxis.

[1]  M. Ikeuchi,et al.  Primary intermediate in the photocycle of a blue-light sensory BLUF FAD-protein, Tll0078, of Thermosynechococcus elongatus BP-1. , 2005, Biochemistry.

[2]  Masakatsu Watanabe,et al.  Equal-quantum Action Spectra Indicate Fluence-rate–selective Action of Multiple Photoreceptors for Photomovement of the Thermophilic Cyanobacterium Synechococcus elongatus¶ , 2001 .

[3]  M. Ikeuchi,et al.  Cyanobacterial phytochrome-like PixJ1 holoprotein shows novel reversible photoconversion between blue- and green-absorbing forms. , 2004, Plant & cell physiology.

[4]  D. Bhaya,et al.  Multiple Light Inputs Control Phototaxis in Synechocystis sp. Strain PCC6803 , 2003, Journal of bacteriology.

[5]  A. Wilde,et al.  Disruption of a Synechocystis sp. PCC 6803 gene with partial similarity to phytochrome genes alters growth under changing light qualities , 1997, FEBS letters.

[6]  Masakatsu Watanabe,et al.  DESIGN AND PERFORMANCE OF THE OKAZAKI LARGE SPECTROGRAPH FOR PHOTOBIOLOGICAL RESEARCH , 1982 .

[7]  M. Ikeuchi,et al.  Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication. , 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.

[8]  Carl E. Bauer,et al.  AppA Is a Blue Light Photoreceptor that Antirepresses Photosynthesis Gene Expression in Rhodobacter sphaeroides , 2002, Cell.

[9]  K. Hasegawa,et al.  Spectroscopic analysis of the dark relaxation process of a photocycle in a sensor of blue light using FAD (BLUF) protein Slr1694 of the cyanobacterium Synechocystis sp. PCC6803. , 2005, Plant & cell physiology.

[10]  Masahiro Kasahara,et al.  Arabidopsis nph1 and npl1: Blue light receptors that mediate both phototropism and chloroplast relocation , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[11]  E. Tyystjärvi,et al.  Action spectrum of psbA gene transcription is similar to that of photoinhibition in Synechocystis sp. PCC 6803 , 2002, FEBS letters.

[12]  H. Fukuzawa,et al.  Photochemical Properties of the Flavin Mononucleotide-Binding Domains of the Phototropins from Arabidopsis, Rice, andChlamydomonas reinhardtii 1 , 2002, Plant Physiology.

[13]  J. Kozioł,et al.  STUDIES ON FLAVINS IN ORGANIC SOLVENTS‐I * . SPECTRAL CHARACTERISTICS OF RIBOFLAVIN, RIBOFLAVIN TETRABUTYRATE AND LUMICHROME , 1966 .

[14]  D. Bhaya,et al.  The role of an alternative sigma factor in motility and pilus formation in the cyanobacterium Synechocystis sp. strain PCC6803. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[15]  I. Kavakli,et al.  Circadian photoreception in humans and mice. , 2002, Molecular interventions.

[16]  L. Mcintosh,et al.  Light-activated heterotrophic growth of the cyanobacterium Synechocystis sp. strain PCC 6803: a blue-light-requiring process , 1991, Journal of bacteriology.

[17]  R. Aebersold,et al.  Red algal LHC I genes have similarities with both Chl a/b- and a/c-binding proteins: A 21 kDa polypeptide encoded by LhcaR2 is one of the six LHC I polypeptides , 1997, Photosynthesis Research.

[18]  G. Tollin,et al.  Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: a novel photocycle involving flavin stacking with an aromatic amino acid. , 2003, Biochemistry.

[19]  D. Bhaya,et al.  Light regulation of type IV pilus-dependent motility by chemosensor-like elements in Synechocystis PCC6803 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[20]  L Bogorad,et al.  Photomovement of the Gliding Cyanobacterium Synechocystis sp. PCC 6803 , 1999, Photochemistry and photobiology.

[21]  P Reymond,et al.  Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism. , 1998, Science.

[22]  A. Kamei,et al.  Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120. , 2001, DNA Research.

[23]  J. Christie,et al.  Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. , 2000, Biochemistry.

[24]  M. Sternberg,et al.  Enhanced genome annotation using structural profiles in the program 3D-PSSM. , 2000, Journal of molecular biology.

[25]  K. Hasegawa,et al.  Light-induced structural changes in a putative blue-light receptor with a novel FAD binding fold sensor of blue-light using FAD (BLUF); Slr1694 of synechocystis sp. PCC6803. , 2004, Biochemistry.

[26]  M. Ikeuchi,et al.  Structure of a cyanobacterial BLUF protein, Tll0078, containing a novel FAD-binding blue light sensor domain. , 2005, Journal of molecular biology.

[27]  M. Ikeuchi,et al.  Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. , 2002, DNA research : an international journal for rapid publication of reports on genes and genomes.

[28]  Minoru Kanehisa,et al.  Identification of a new cryptochrome class. Structure, function, and evolution. , 2003, Molecular cell.

[29]  Masakatsu Watanabe,et al.  A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis , 2002, Nature.

[30]  M. Ohmori,et al.  Blue light stimulates cyanobacterial motility via a cAMP signal transduction system , 2004, Molecular microbiology.

[31]  A. Wilde,et al.  The cyanobacterial phytochrome Cph2 inhibits phototaxis towards blue light , 2002, Molecular microbiology.

[32]  Minoru Kanehisa,et al.  DNA Microarray Analysis of Redox-Responsive Genes in the Genome of the Cyanobacterium Synechocystis sp. Strain PCC 6803 , 2003, Journal of bacteriology.

[33]  M. Rosbash,et al.  The Coevolution of Blue-Light Photoreception and Circadian Rhythms , 2003, Journal of Molecular Evolution.

[34]  S. Kaplan,et al.  appA, a novel gene encoding a trans-acting factor involved in the regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1 , 1995, Journal of bacteriology.

[35]  A. Kamei,et al.  A Eukaryotic-Type Protein Kinase, SpkA, Is Required for Normal Motility of the Unicellular CyanobacteriumSynechocystis sp. Strain PCC 6803 , 2001, Journal of bacteriology.

[36]  S. Kaplan,et al.  AppA, a Redox Regulator of Photosystem Formation in Rhodobacter sphaeroides 2.4.1, Is a Flavoprotein , 1998, The Journal of Biological Chemistry.

[37]  M. Ahmad,et al.  Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1 , 1995, Science.

[38]  M. A. van der Horst,et al.  Initial Characterization of the Primary Photochemistry of AppA, a Blue-light–using Flavin Adenine Dinucleotide–domain Containing Transcriptional Antirepressor Protein from Rhodobacter sphaeroides: A Key Role for Reversible Intramolecular Proton Transfer from the Flavin Adenine Dinucleotide Chromopho , 2003, Photochemistry and photobiology.

[39]  I. Zhulin,et al.  PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli , 2000, Molecular microbiology.

[40]  V. Massey The chemical and biological versatility of riboflavin. , 2000, Biochemical Society transactions.

[41]  Satoshi Tabata,et al.  A HEAT-repeats containing protein, IaiH, stabilizes the iron-sulfur cluster bound to the cyanobacterial IscA homologue, IscA2. , 2003, Journal of biochemistry.

[42]  M. Kanehisa,et al.  Response to oxidative stress involves a novel peroxiredoxin gene in the unicellular cyanobacterium Synechocystis sp. PCC 6803. , 2004, Plant & cell physiology.

[43]  M. Ikeuchi,et al.  Phototactic motility in the unicellular cyanobacterium Synechocystis sp. PCC 6803 , 2004, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[44]  S. Austin,et al.  Azotobacter vinelandii NIFL is a flavoprotein that modulates transcriptional activation of nitrogen-fixation genes via a redox-sensitive switch. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Mark Gomelsky,et al.  BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms. , 2002, Trends in biochemical sciences.

[46]  M. Ikeuchi,et al.  Mutational analysis of genes involved in pilus structure, motility and transformation competency in the unicellular motile cyanobacterium Synechocystis sp. PCC 6803. , 2001, Plant & cell physiology.

[47]  M. Ikeuchi,et al.  Novel putative photoreceptor and regulatory genes Required for the positive phototactic movement of the unicellular motile cyanobacterium Synechocystis sp. PCC 6803. , 2000, Plant & cell physiology.

[48]  S. Golden,et al.  Blue and red light reversibly control psbA expression in the cyanobacterium Synechococcus sp. strain PCC 7942. , 1994, The Journal of biological chemistry.