A NeuroD1 AAV-Based Gene Therapy for Functional Brain Repair after Ischemic Injury through In Vivo Astrocyte-to-Neuron Conversion

Adult mammalian brains have largely lost neuroregeneration capability except for a few niches. Previous studies have converted glial cells into neurons, but the total number of neurons generated is limited and the therapeutic potential is unclear. Here, we demonstrate that NeuroD1-mediated in situ astrocyte-to-neuron conversion can regenerate a large number of functional new neurons after ischemic injury. Specifically, using NeuroD1 adeno-associated virus (AAV)-based gene therapy, we were able to regenerate one third of the total lost neurons caused by ischemic injury and simultaneously protect another one third of injured neurons, leading to a significant neuronal recovery. RNA sequencing and immunostaining confirmed neuronal recovery after cell conversion at both the mRNA level and protein level. Brain slice recordings found that the astrocyte-converted neurons showed robust action potentials and synaptic responses at 2 months after NeuroD1 expression. Anterograde and retrograde tracing revealed long-range axonal projections from astrocyte-converted neurons to their target regions in a time-dependent manner. Behavioral analyses showed a significant improvement of both motor and cognitive functions after cell conversion. Together, these results demonstrate that in vivo cell conversion technology through NeuroD1-based gene therapy can regenerate a large number of functional new neurons to restore lost neuronal functions after injury.

[1]  I. Módy,et al.  Reducing excessive GABA-mediated tonic inhibition promotes functional recovery after stroke. , 2010, Nature.

[2]  K. Fuxe,et al.  Endothelin‐1 induced lesions of the frontoparietal cortex of the rat. A possible model of focal cortical ischemia , 1997, Neuroreport.

[3]  A. Messing,et al.  Expression Specificity of GFAP Transgenes , 2004, Neurochemical Research.

[4]  Christoforos Hadjichrysanthou,et al.  Why do so many clinical trials of therapies for Alzheimer's disease fail? , 2017, The Lancet.

[5]  I. Weissman,et al.  Transplanted human fetal neural stem cells survive, migrate, and differentiate in ischemic rat cerebral cortex. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[6]  Thomas Vierbuchen,et al.  Induction of human neuronal cells by defined transcription factors , 2011, Nature.

[7]  K. Welch,et al.  Total quality improvement method for reduction of delays between emergency department admission and treatment of acute ischemic stroke. The National Institute of Neurological Disorders and Stroke rt-PA Stroke Study Group. , 1997, Archives of neurology.

[8]  Anne-Lise D. Maag,et al.  Mouse model of focal cerebral ischemia using endothelin-1 , 2008, Journal of Neuroscience Methods.

[9]  O. Lindvall,et al.  Intracerebral Infusion of Glial Cell Line–Derived Neurotrophic Factor Promotes Striatal Neurogenesis After Stroke in Adult Rats , 2006, Stroke.

[10]  Steven L Salzberg,et al.  HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.

[11]  Joseph E LeDoux,et al.  Molecular Mechanisms of Fear Learning and Memory , 2011, Cell.

[12]  K. Jin,et al.  Effect of human neural precursor cell transplantation on endogenous neurogenesis after focal cerebral ischemia in the rat , 2011, Brain Research.

[13]  G. Ming,et al.  Adult Neurogenesis in the Mammalian Brain: Significant Answers and Significant Questions , 2011, Neuron.

[14]  V. Gradinaru,et al.  Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems , 2017, Nature Neuroscience.

[15]  M. Götz,et al.  Sox2-Mediated Conversion of NG2 Glia into Induced Neurons in the Injured Adult Cerebral Cortex , 2014, Stem cell reports.

[16]  Chun-li Zhang,et al.  In vivo conversion of astrocytes to neurons in the injured adult spinal cord , 2014, Nature Communications.

[17]  F. Sun,et al.  New striatal neurons form projections to substantia nigra in adult rat brain after stroke , 2012, Neurobiology of Disease.

[18]  Timothy H Murphy,et al.  Remapping the Somatosensory Cortex after Stroke: Insight from Imaging the Synapse to Network , 2009, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[19]  E. J. Green,et al.  Two effective behavioral tasks for evaluating sensorimotor dysfunction following traumatic brain injury in mice , 2003, Journal of Neuroscience Methods.

[20]  G. Quirk,et al.  The Role of Ventromedial Prefrontal Cortex in the Recovery of Extinguished Fear , 2000, The Journal of Neuroscience.

[21]  E. Hol,et al.  Neuronal expression of GFAP in patients with Alzheimer pathology and identification of novel GFAP splice forms , 2003, Molecular Psychiatry.

[22]  S. Dunnett,et al.  The staircase test of skilled reaching in mice , 2001, Brain Research Bulletin.

[23]  Sanlan Li,et al.  Ascl1 Converts Dorsal Midbrain Astrocytes into Functional Neurons In Vivo , 2015, The Journal of Neuroscience.

[24]  S. Robertson,et al.  Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming. , 2016, Cell stem cell.

[25]  Gene W. Yeo,et al.  Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis , 2009, Nature Neuroscience.

[26]  R. Bachoo,et al.  In vivo reprogramming of astrocytes to neuroblasts in the adult brain , 2013, Nature Cell Biology.

[27]  Joseph P. Broderick,et al.  Tissue plasminogen activator for acute ischemic stroke. The National Institute of Neurological Disorders and Stroke rt-PA Stroke Study Group. , 1995 .

[28]  A. Björklund,et al.  Generation of induced neurons via direct conversion in vivo , 2013, Proceedings of the National Academy of Sciences.

[29]  Koroshetz Wj,et al.  Tissue plasminogen activator for acute ischemic stroke. , 1996, The New England journal of medicine.

[30]  Wei Shi,et al.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features , 2013, Bioinform..

[31]  C. Frühbeis,et al.  Extracellular vesicles as mediators of neuron-glia communication , 2013, Front. Cell. Neurosci..

[32]  Michael S Fanselow,et al.  Role of the Basolateral Amygdala in the Storage of Fear Memories across the Adult Lifetime of Rats , 2004, The Journal of Neuroscience.

[33]  Hao Li,et al.  An in vivo model of functional and vascularized human brain organoids , 2018, Nature Biotechnology.

[34]  O. Lindvall,et al.  Grafted human neural stem cells enhance several steps of endogenous neurogenesis and improve behavioral recovery after middle cerebral artery occlusion in rats , 2013, Neurobiology of Disease.

[35]  K. Deisseroth,et al.  Targeting Neural Circuits , 2016, Cell.

[36]  Raphael Guzman,et al.  Cell Transplantation Therapy for Stroke , 2007, Stroke.

[37]  M. Götz,et al.  Directing Astroglia from the Cerebral Cortex into Subtype Specific Functional Neurons , 2010, PLoS biology.

[38]  C. Rosen,et al.  The science of cerebral ischemia and the quest for neuroprotection: navigating past failure to future success. , 2013, Journal of neurosurgery.

[39]  Stephen Maren,et al.  Contextual and auditory fear conditioning are mediated by the lateral, basal, and central amygdaloid nuclei in rats. , 2001, Learning & memory.

[40]  Lei Zhang,et al.  In vivo direct reprogramming of reactive glial cells into functional neurons after brain injury and in an Alzheimer's disease model. , 2014, Cell stem cell.

[41]  J. B. Demb,et al.  Restoration of vision after de novo genesis of rod photoreceptors in mammalian retinas , 2018, Nature.

[42]  Jack M Parent,et al.  Rat forebrain neurogenesis and striatal neuron replacement after focal stroke , 2002, Annals of neurology.

[43]  Hedong Li,et al.  In Vivo Reprogramming for CNS Repair: Regenerating Neurons from Endogenous Glial Cells , 2016, Neuron.

[44]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[45]  B. Aronow,et al.  Environmental Impact on Direct Neuronal Reprogramming In Vivo in the Adult Brain , 2013, Nature Communications.

[46]  D. Schaffer,et al.  Adeno-Associated Virus Vectors and Neurological Gene Therapy , 2015, The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry.

[47]  F. Testai,et al.  Neurogenesis and Inflammation after Ischemic Stroke: What is Known and Where We Go from Here , 2014, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[48]  J. Gonçalves,et al.  Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior , 2016, Cell.

[49]  V. Perry,et al.  Focal Lesions in the Rat Central Nervous System Induced by Endothelin‐1 , 2003, Journal of neuropathology and experimental neurology.

[50]  K. Christie,et al.  Is integration and survival of newborn neurons the bottleneck for effective neural repair by endogenous neural precursor cells? , 2014, Front. Neurosci..

[51]  T. Bonhoeffer,et al.  Transplanted embryonic neurons integrate into adult neocortical circuits , 2016, Nature.

[52]  T. Bliss,et al.  Optimizing the success of cell transplantation therapy for stroke , 2010, Neurobiology of Disease.

[53]  M. Giacca,et al.  NEUROD1 Instructs Neuronal Conversion in Non-Reactive Astrocytes , 2017, Stem cell reports.

[54]  R. Dempsey,et al.  Stroke‐induced progenitor cell proliferation in adult spontaneously hypertensive rat brain: effect of exogenous IGF‐1 and GDNF , 2003, Journal of neurochemistry.

[55]  S. Goldman Stem and Progenitor Cell-Based Therapy of the Central Nervous System: Hopes, Hype, and Wishful Thinking. , 2016, Cell stem cell.

[56]  G. Dusting,et al.  Brain Remodelling following Endothelin-1 Induced Stroke in Conscious Rats , 2014, PloS one.

[57]  O. Witte,et al.  Immunocytochemical Detection of Newly Generated Neurons in the Perilesional Area of Cortical Infarcts After Intraventricular Application of Brain-Derived Neurotrophic Factor , 2009, Journal of neuropathology and experimental neurology.

[58]  A. Álvarez-Buylla,et al.  The Adult Ventricular-Subventricular Zone (V-SVZ) and Olfactory Bulb (OB) Neurogenesis. , 2016, Cold Spring Harbor perspectives in biology.

[59]  D. Corbett,et al.  An analysis of four different methods of producing focal cerebral ischemia with endothelin-1 in the rat , 2006, Experimental Neurology.

[60]  O. Lindvall,et al.  Stem cells for the treatment of neurological disorders , 2006, Nature.

[61]  K. Nave,et al.  Neurod1 is essential for the survival and maturation of adult-born neurons , 2009, Nature Neuroscience.

[62]  F. Rieke,et al.  Stimulation of functional neuronal regeneration from Müller glia in adult mice , 2017, Nature.

[63]  S. Linnarsson,et al.  Induction of functional dopamine neurons from human astrocytes in vitro and mouse astrocytes in a Parkinson's disease model , 2017, Nature Biotechnology.

[64]  Benjamin E. Reubinoff,et al.  Neural progenitors from human embryonic stem cells , 2001, Nature Biotechnology.

[65]  Khadar Abdi,et al.  Protective astrogenesis from the SVZ niche after injury is controlled by Notch modulator Thbs4 , 2013, Nature.

[66]  Joseph E LeDoux,et al.  Fear conditioning induces associative long-term potentiation in the amygdala , 1997, Nature.

[67]  Paul M. George,et al.  Novel Stroke Therapeutics: Unraveling Stroke Pathophysiology and Its Impact on Clinical Treatments , 2015, Neuron.

[68]  Marius Wernig,et al.  In vitro differentiation of transplantable neural precursors from human embryonic stem cells , 2001, Nature Biotechnology.

[69]  M. Kaste,et al.  Thrombolysis with alteplase 3 to 4.5 hours after acute ischemic stroke. , 2008, The New England journal of medicine.

[70]  O. Lindvall,et al.  Neuronal replacement from endogenous precursors in the adult brain after stroke , 2002, Nature Medicine.

[71]  E. Snyder,et al.  A safer stem cell: on guard against cancer , 2009, Nature Medicine.

[72]  G. Kwakkel,et al.  What Is the Evidence for Physical Therapy Poststroke? A Systematic Review and Meta-Analysis , 2014, PloS one.

[73]  S. Sternson,et al.  A FLEX Switch Targets Channelrhodopsin-2 to Multiple Cell Types for Imaging and Long-Range Circuit Mapping , 2008, The Journal of Neuroscience.

[74]  A. Nagy,et al.  Adult Neural Stem Cells from the Subventricular Zone Give Rise to Reactive Astrocytes in the Cortex after Stroke. , 2015, Cell stem cell.

[75]  Tiago Cardoso,et al.  In Vivo Reprogramming of Striatal NG2 Glia into Functional Neurons that Integrate into Local Host Circuitry , 2015, Cell reports.

[76]  Matthew Jeffers,et al.  A reproducible Endothelin-1 model of forelimb motor cortex stroke in the mouse , 2014, Journal of Neuroscience Methods.

[77]  Jonas Frisén,et al.  A latent neurogenic program in astrocytes regulated by Notch signaling in the mouse , 2014, Science.