Purification and biochemical properties of microbial pectinases—a review

Abstract Pectinases are a complex group of enzymes that degrade various pectic substances present in plant tissues. Pectinases have potential applications in fruit, paper and textile industries. Apart from these industrial applications, these enzymes possess biological importance in protoplast fusion technology and plant pathology. Since applications of pectinases in various fields are widening, it is important to understand the nature and properties of these enzymes for efficient and effective usage. For the past few years, vigorous research has been carried out on isolation and characterization of pectinases. New affinity matrices with improved characteristics and affinity-precipitation techniques have been developed for purification of pectinases. Recently much attention has been focused on chemical modification of pectinases and their catalytic performance by various researchers. These studies are helpful in determining key amino acid residues responsible for substrate binding, catalytic action, and physico-chemical environmental conditions for maximum hydrolysis. This short review highlights progress on purification and understanding the biochemical aspects of microbial pectinases.

[1]  H. Jörnvall,et al.  An essential tyrosine residue of Aspergillus polygalacturonase , 1996, FEBS letters.

[2]  T. Katsuragi,et al.  Purification and Characterization of an Endo-Polygalacturonase from Aspergillus awamori , 2000, Bioscience, biotechnology and biochemistry.

[3]  J. A. Jorge,et al.  Pectinase production by Neurospora crassa: purification and biochemical characterization of extracellular polygalacturonase activity. , 1991, Journal of general microbiology.

[4]  J. Benen,et al.  Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II and C. , 2001, European journal of biochemistry.

[5]  G. Salmond,et al.  Beta‐lactamase topology probe analysis of the OutO NMePhe peptidase, and six other Out protein components of the Erwinia carotovora general secretion pathway apparatus , 1994, Molecular microbiology.

[6]  I. Karube,et al.  Facile isolation ofEndo-pectate lyase fromErwinia carotovora based on electrostatic interaction , 1990, Applied biochemistry and biotechnology.

[7]  Munishwar N. Gupta,et al.  Purification and Immobilization of Aspergillus Niger Pectinase on Magnetic Latex Beads , 1995 .

[8]  M. Cánovas,et al.  Kinetic and operational study of a cross-flow reactor with immobilized pectolytic enzymes. , 1990, Enzyme and microbial technology.

[9]  H. Phaff,et al.  ELIMINATIVE CLEAVAGE OF PECTIN AND OF OLIGOGALACTURONIDE METHYL ESTERS BY PECTIN TRANS-ELIMINASE. , 1964, The Journal of biological chemistry.

[10]  Ľ. Rexová-Benková,et al.  Isolation of extracellular pectolytic enzymes produced by Aspergillus niger , 1966 .

[11]  S. Hari Krishna,et al.  Simultaneous saccharification and fermentation of lignocellulosic wastes to ethanol using a thermotolerant yeast. , 2001, Bioresource technology.

[12]  A. Petersen,et al.  Group 13 grass allergens: structural variability between different grass species and analysis of proteolytic stability. , 2001, The Journal of allergy and clinical immunology.

[13]  G. Birch,et al.  Enzymes and Food Processing , 1980 .

[14]  M. Moo-young,et al.  Enzymatic degradation of cell wall and related plant polysaccharides. , 1989, Critical reviews in biotechnology.

[15]  P. Ayoubi,et al.  Pectins, pectinases and plant-microbe interactions. , 1999, Biotechnology & genetic engineering reviews.

[16]  S. Rakshit,et al.  Effect of carbon sources on the synthesis of pectinase by Aspergilli , 1995 .

[17]  M Takao,et al.  Purification and Characterization of Thermostable Pectate Lyase with Protopectinase Activity from Thermophilic Bacillus sp. TS 47 , 2000, Bioscience, biotechnology, and biochemistry.

[18]  M. Grasselli,et al.  High-speed pectic enzyme fractionation by immobilised metal ion affinity membranes , 2000 .

[19]  J. Baumann Application of Enzymes in Fruit Juice Technology , 1981 .

[20]  A. Belarbi,et al.  Regulation of the expression of endopolygalacturonase gene PGU1 in Saccharomyces , 2001, Yeast.

[21]  M. Fěvre,et al.  Purification and Characterization of Extracellular Pectinolytic Enzymes Produced by Sclerotinia sclerotiorum , 1992, Applied and environmental microbiology.

[22]  E. Baldwin,et al.  Production of ethanol from enzymatically hydrolyzed orange peel by the yeastSaccharomyces cerevisiae , 1994, Applied biochemistry and biotechnology.

[23]  A. Kembhavi,et al.  Implication of tryptophan and histidine in the active site of endo-polygalacturonase from Aspergillus ustus: elucidation of the reaction mechanism. , 1996, Biochimica et biophysica acta.

[24]  S. Ito,et al.  Purification and Properties of a Galacturonic Acid-releasing Exopolygalacturonase from a Strain of Bacillus , 2001, Bioscience, biotechnology, and biochemistry.

[25]  J. Bohdziewicz,et al.  Ultrafiltration preparation of pectinolytic enzymes from citric acid fermentation broth , 1994 .

[26]  J. Ricard,et al.  Pectin methylesterase, metal ions and plant cell-wall extension. Hydrolysis of pectin by plant cell-wall pectin methylesterase. , 1991, The Biochemical journal.

[27]  G. Ginalska,et al.  New matrices for the purification of pectinases by affinity chromatography. , 1985, Biochemical and biophysical research communications.

[28]  A. Dinoor,et al.  Expression of pectate lyase from Colletotrichum gloesosporioides in C. magna promotes pathogenicity. , 2000, Molecular plant-microbe interactions : MPMI.

[29]  W. Steiner,et al.  Concomitant biosynthesis of Aspergillus niger pectolytic enzymes and citric acid on sucrose , 1994 .

[30]  P. Mill The pectic enzymes of Aspergillus niger. A second exopolygalacturonase. , 1966, The Biochemical journal.

[31]  Yuan K. Liu,et al.  PURIFICATION AND CHARACTERIZATION OF ENDO-POLYGALACTURONASE FROM Rhizopus arrhizus , 1978 .

[32]  Lian-Hui Zhang,et al.  AiiA, an enzyme that inactivates the acylhomoserine lactone quorum-sensing signal and attenuates the virulence of Erwinia carotovora , 2000 .

[33]  J. Teixeira,et al.  Recovery of endo-polygalacturonase using polyethylene glycol-salt aqueous two-phase extraction with polymer recycling , 2000, Bioseparation.

[34]  H. Phaff,et al.  PURIFICATION AND CERTAIN PROPERTIES OF PECTIN TRANS-ELIMINASE FROM ASPERGILLUS FONSECAEUS. , 1964, The Journal of biological chemistry.

[35]  Lee,et al.  Effects of N-acetylation degree on N-acetylated chitosan hydrolysis with commercially available and modified pectinases. , 2001, Biochemical engineering journal.

[36]  T. Panda,et al.  Production of pectolytic enzymes – a review , 1998 .

[37]  B. Mattiasson,et al.  Affinity precipitation of proteins , 1996, Journal of molecular recognition : JMR.

[38]  Yoshinari Kobayashi,et al.  Biochemical pulping. Part XI. Isolation and fundamental properties of endo-pectate lyase pI-isozymes from Erwinia carotovora. , 1984 .

[39]  C. Huitrón,et al.  Stimulation of the production of extracellular pectinolytic activities of Aspergillus sp. by galacturonic acid and glucose addition , 1987 .

[40]  Ľ. Rexová-Benková Characterization of extracellular polygalacturonases of Aspergillus niger , 1967 .

[41]  W. Steiner,et al.  Submerged production of pectolytic enzymes by Aspergillus niger: effect of different aeration/agitation regimes , 1989, Applied Microbiology and Biotechnology.

[42]  S. Denis,et al.  Factors affecting pectate lyase activity during membrane filtration , 1990 .

[43]  T. Panda,et al.  Statistical optimization of medium components for improved synthesis of pectinase by Aspergillus niger , 1997 .

[44]  M. Kobayashi,et al.  Substrate binding ability of chemically inactivated pectinase for the substrate pectic acid. , 1995, Bioscience, biotechnology, and biochemistry.

[45]  Tapobrata Panda,et al.  Performance of pectolytic enzymes during hydrolysis of pectic substances under assay conditions: a statistical approach , 1999 .

[46]  C. Ayyanna,et al.  Simultaneous saccharification and fermentation of pretreated Antigonum leptopus (Linn) leaves to ethanol , 1999 .

[47]  M. Aigle,et al.  Cloning, sequence analysis and overexpression of a Saccharomyces cerevisiae endopolygalacturonase‐encoding gene (PGL1) , 1999, Yeast.

[48]  B. Savary PERFUSION CHROMATOGRAPHY SEPARATION OF THE TOMATO FRUIT-SPECIFIC PECTIN METHYLESTERASE FROM A SEMIPURIFIED COMMERCIAL ENZYME PREPARATION , 2001, Preparative biochemistry & biotechnology.

[49]  I. Barash,et al.  Polygalacturonases associated with infection of Valencia orange by Penicillium italicum. , 1990 .

[50]  J. Benen,et al.  Inversion of configuration during hydrolysis of α‐1,4‐galacturonidic linkage by three Aspergillus polygalacturonases , 1996, FEBS letters.

[51]  H. Kiyohara,et al.  Characterisation of the endo-polygalacturonase-resistant region of the pectin from Bupleurum falcatum L.--a polysaccharide with an active function in clearance of immune complexes. , 1995, Carbohydrate Research.

[52]  I. Labudová,et al.  Purification and characterization of pectinesterase and polygalacturonase from Trichoderma reesei , 1985 .

[53]  Y. Miyazaki Purification and Characterization of Endo-Pectate Lyase from Bacillus macerans(Biological Chemistry) , 1991 .

[54]  F. Brühlmann Purification and characterization of an extracellular pectate lyase from an Amycolata sp. , 1995, Applied and environmental microbiology.

[55]  J. Benen,et al.  Performance of Selected Microbial Pectinases on Synthetic Monomethyl-esterified Di- and Trigalacturonates* , 1999, The Journal of Biological Chemistry.

[56]  Y. Otsuki,et al.  Isolation of tobacco mesophyll cells in intact and active state , 1968 .

[57]  G. Condemine,et al.  The Erwinia chrysanthemi pecT gene regulates pectinase gene expression , 1996, Journal of bacteriology.

[58]  N. Naidu,et al.  Application of response surface methodology to evaluate some aspects on stability of pectolytic enzymes from Aspergillus niger , 1998 .

[59]  J. Benen,et al.  Structure and function of pectic enzymes: virulence factors of plant pathogens. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[60]  D R Kashyap,et al.  Applications of pectinases in the commercial sector: a review. , 2001, Bioresource technology.

[61]  R. Dean,et al.  Isolation and characterization of polygalacturonase genes (pecA and pecB) from Aspergillus flavus , 1995, Applied and environmental microbiology.

[62]  T. Panda,et al.  Rotating simplex method of optimization of physical parameters for higher production of extracellular pectinases in bioreactor , 2000 .

[63]  P. Mill The pectic enzymes of Aspergillus niger. A mercury-activated exopolygalacturonase. , 1966, The Biochemical journal.

[64]  T. G. Villa,et al.  Differences between pectic enzymes produced by laboratory and wild-type strains of Saccharomyces cerevisiae , 1997 .

[65]  C. Lang,et al.  Perspectives in the biological function and the technological application of polygalacturonases , 2000, Applied Microbiology and Biotechnology.

[66]  E. Vandamme,et al.  Pectin, pectinase and protopectinase: production, properties, and applications. , 1993, Advances in applied microbiology.

[67]  M. Pariza,et al.  Determining the Safety of Enzymes Used in Food Processing. , 1983, Journal of food protection.

[68]  Ricard,et al.  Pectinase in papermaking: solving retention problems in mechanical pulps bleached with hydrogen peroxide. , 2000, Enzyme and microbial technology.

[69]  P. L. Manachini,et al.  Purification and properties of an endopolygalacturonase produced byRhizopusstolonifer , 1987, Biotechnology Letters.

[70]  M. Maldonado,et al.  Catabolite repression of the synthesis of inducible polygalacturonase and pectinesterase byAspergillus niger sp. , 1989, Current Microbiology.

[71]  K. Wada,et al.  Crystallization and preliminary X-ray analysis of endopolygalacturonase SE1 from Trichosporon penicillatum. , 2000, Acta crystallographica. Section D, Biological crystallography.

[72]  T. Panda,et al.  Multiresponse analysis of microbiological parameters affecting the production of pectolytic enzymes by Aspergillus niger: a statistical view , 1999 .

[73]  P. L. Manachini,et al.  Pectic enzymes from Aureobasidium pullulans LV 10 , 1988 .

[74]  K. Funane,et al.  Mold Pectinase Modified with Dialdehyde Derivatives of Dextran and Cellulose. , 1996, Bioscience, biotechnology, and biochemistry.

[75]  T. Sakamoto,et al.  Purification, characterization, and production of two pectic transeliminases with protopectinase activity from Bacillus subtilis. , 1994, Bioscience, biotechnology, and biochemistry.

[76]  H. Dalbøge,et al.  Expression cloning of fungal enzyme genes; a novel approach for efficient isolation of enzyme genes of industrial relevance. , 1997, FEMS microbiology reviews.

[77]  M. Russel Macromolecular assembly and secretion across the bacterial cell envelope: type II protein secretion systems. , 1998, Journal of molecular biology.