Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
暂无分享,去创建一个
W. Nierman | G. Payne | O. Abolude | S. Pakala | D. Denning | J. Hostetler | V. Joardar | A. Andrianopoulos | N. Zafar | P. Paukstelis | Natalie F Abrams | Suchitra Pakala | S. Pakala | Olukemi O. Abolude
[1] A. Tavare. Scientists are to investigate “three parent IVF” for preventing mitochondrial diseases , 2012, BMJ : British Medical Journal.
[2] H. Osiewacz,et al. Cellular homeostasis in fungi: impact on the aging process. , 2012, Sub-cellular biochemistry.
[3] Peer Bork,et al. Insight into Structure and Assembly of the Nuclear Pore Complex by Utilizing the Genome of a Eukaryotic Thermophile , 2011, Cell.
[4] N. Larsson,et al. Mitochondrial DNA mutations in disease and aging , 2011, The Journal of cell biology.
[5] B. Posteraro,et al. Contribution of CgPDR1-Regulated Genes in Enhanced Virulence of Azole-Resistant Candida glabrata , 2011, PloS one.
[6] B. Stoddard,et al. Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification. , 2011, Structure.
[7] G. Goldman,et al. Involvement of an Alternative Oxidase in Oxidative Stress and Mycelium-to-Yeast Differentiation in Paracoccidioides brasiliensis , 2010, Eukaryotic Cell.
[8] C. Basse. Mitochondrial inheritance in fungi. , 2010, Current opinion in microbiology.
[9] H. Osiewacz,et al. Mitochondrial pathways governing stress resistance, life, and death in the fungal aging model Podospora anserina , 2010, Annals of the New York Academy of Sciences.
[10] R. Hoekstra,et al. Mitochondrial recombination increases with age in Podospora anserina , 2010, Mechanisms of Ageing and Development.
[11] Cecilia Saccone,et al. Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria , 2009, BMC Bioinformatics.
[12] Sergey Koren,et al. Aggressive assembly of pyrosequencing reads with mates , 2008, Bioinform..
[13] Andriy Kovalchuk,et al. Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum , 2008, Nature Biotechnology.
[14] A. Lambowitz,et al. Identification and evolution of fungal mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity , 2008, Proceedings of the National Academy of Sciences.
[15] C. Vágvölgyi,et al. Comparative analysis of the complete mitochondrial genomes of Aspergillus niger mtDNA type 1a and Aspergillus tubingensis mtDNA type 2b. , 2008, FEMS microbiology letters.
[16] Jaideep P. Sundaram,et al. Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus , 2008, PLoS genetics.
[17] S. Peterson. Phylogenetic analysis of Aspergillus species using DNA sequences from four loci , 2008, Mycologia.
[18] R. Maheshwari,et al. Senescence in fungi: the view from Neurospora. , 2008, FEMS microbiology letters.
[19] B. McDonald,et al. Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola. , 2007, Fungal genetics and biology : FG & B.
[20] J. Galagan,et al. Aspergillus nidulans Genome and a Comparative Analysis of Genome Evolution in Aspergillus , 2007 .
[21] Gustavo H. Goldman,et al. The aspergilli: genomics, medical aspects, biotechnology, and research methods. , 2007 .
[22] James K. Hane,et al. Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum[W][OA] , 2007, The Plant Cell Online.
[23] R. Hoekstra,et al. Integration of a pAL2-1 homologous mitochondrial plasmid associated with life span extension in Podospora anserina. , 2007, Fungal genetics and biology : FG & B.
[24] D. Hoffmeister,et al. Natural products of filamentous fungi: enzymes, genes, and their regulation. , 2007, Natural product reports.
[25] J. A. Roubos,et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 , 2007, Nature Biotechnology.
[26] C. Vágvölgyi,et al. Interpretation of mtDNA RFLP variability among Aspergillus tubingensis isolates , 2007, Antonie van Leeuwenhoek.
[27] Eileen Kraemer,et al. SynView: a GBrowse-compatible approach to visualizing comparative genome data , 2006, Bioinform..
[28] N. Brown,et al. Invasive fungal infections: a review of epidemiology and management options. , 2006, Journal of medical microbiology.
[29] de Winde,et al. University of Groningen Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 Pel, , 2006 .
[30] William H. Majoros,et al. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus , 2005, Nature.
[31] K. Isono,et al. Genome sequencing and analysis of Aspergillus oryzae , 2005, Nature.
[32] Christina A. Cuomo,et al. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae , 2005, Nature.
[33] Thomas Ludwig,et al. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees , 2005, Bioinform..
[34] M. P. Cummings. PHYLIP (Phylogeny Inference Package) , 2004 .
[35] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[36] A. Griffiths,et al. A new senescence-inducing mitochondrial linear plasmid in field-isolated Neurospora crassa strains from India , 1991, Current Genetics.
[37] Kenneth L. McNally,et al. The complete DNA sequence of the mitochondrial genome of Podospora anserina , 1990, Current Genetics.
[38] Samson S. Y. Wong,et al. The mitochondrial genome of the thermal dimorphic fungus Penicillium marneffei is more closely related to those of molds than yeasts , 2003, FEBS letters.
[39] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[40] A. Gácser,et al. Interpretation of intraspecific variability in mtDNAs of Aspergillus niger strains and rearrangement of their mtDNAs following mitochondrial transmissions. , 2003, FEMS microbiology letters.
[41] S. Salzberg,et al. Fast algorithms for large-scale genome alignment and comparison. , 2002, Nucleic acids research.
[42] Á. Juhász,et al. Role of mobile introns in mitochondrial genome diversity of fungi (a mini review). , 2002, Acta microbiologica et immunologica Hungarica.
[43] D. Sanglard,et al. Role of ATP-Binding-Cassette Transporter Genes in High-Frequency Acquisition of Resistance to Azole Antifungals in Candida glabrata , 2001, Antimicrobial Agents and Chemotherapy.
[44] Kim Rutherford,et al. Artemis: sequence visualization and annotation , 2000, Bioinform..
[45] Wei Qian,et al. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. , 2000, Molecular biology and evolution.
[46] A. Burt,et al. Recurrent invasion and extinction of a selfish gene. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[47] B. Purnelle,et al. The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae , 1998, FEBS letters.
[48] R J Roberts,et al. Homing endonucleases: keeping the house in order. , 1997, Nucleic acids research.
[49] R. Waring,et al. Self-splicing activity of the mitochondrial group-I introns from Aspergillus nidulans and related introns from other species , 1997, Current Genetics.
[50] B. Barrell,et al. Life with 6000 Genes , 1996, Science.
[51] A. Griffiths,et al. Natural plasmids of filamentous fungi. , 1995, Microbiological reviews.
[52] J. D. Parsons,et al. Miropeats: graphical DNA sequence comparisons , 1995, Comput. Appl. Biosci..
[53] J. Sugiyama,et al. Is Penicillium monophyletic? An evaluation of phylogeny in the family Trichocomaceae from 18S, 5.8S and ITS ribosomal DNA sequence data. , 1995 .
[54] A. Cherniack,et al. The mitochondrial tyrosyl-tRNA synthetase of Podospora anserina is a bifunctional enzyme active in protein synthesis and RNA splicing , 1992, Molecular and cellular biology.
[55] A. Lambowitz,et al. Structural analysis of the Neurospora mitochondrial large rRNA intron and construction of a mini-intron that shows protein-dependent splicing. , 1991, The Journal of biological chemistry.
[56] E. Westhof,et al. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. , 1990, Journal of molecular biology.
[57] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[58] R. Collins,et al. A group II intron in the Neurospora mitochondrial coI gene: nucleotide sequence and implications for splicing and molecular evolution. , 1989, Nucleic acids research.
[59] C. Jacq,et al. Site-specific DNA endonuclease and RNA maturase activities of two homologous intron-encoded proteins from yeast mitochondria , 1989, Cell.
[60] R. Saldanha,et al. A latent intron-encoded maturase is also an endonuclease needed for intron mobility , 1989, Cell.
[61] John I. Pitt,et al. Advances in Penicillium and Aspergillus Systematics , 1986, NATO ASI Series.
[62] A. Lambowitz,et al. Mitochondrial ribosome assembly in Neurospora. Structural analysis of mature and partially assembled ribosomal subunits by equilibrium centrifugation in CsCl gradients , 1982, The Journal of cell biology.
[63] A. Lambowitz,et al. Mitochondrial ribosome assembly in Neurospora crassa. Purification of the mitochondrially synthesized ribosomal protein, S-5. , 1981, The Journal of biological chemistry.
[64] A. Lambowitz,et al. Mitochondrial ribosome assembly in Neurospora crassa. Chloramphenicol inhibits the maturation of small ribosomal subunits. , 1977, Journal of molecular biology.