, Julien Transfer RedoxReductase , a Cubic Protein Cage for Structure of Dihydromethanopterin Protein Structure and Folding

[1]  M. Rasche,et al.  Discovery and Characterization of the First Archaeal Dihydromethanopterin Reductase, an Iron-Sulfur Flavoprotein from Methanosarcina mazei , 2013, Journal of bacteriology.

[2]  V. Kickhoefer,et al.  Development of the vault particle as a platform technology. , 2013, ACS nano.

[3]  David Nemazee,et al.  Rational immunogen design to target specific germline B cell receptors , 2012, Retrovirology.

[4]  Robert H. White,et al.  Comparative Genomics Guided Discovery of Two Missing Archaeal Enzyme Families Involved in the Biosynthesis of the Pterin Moiety of Tetrahydromethanopterin and Tetrahydrofolate , 2012, ACS chemical biology.

[5]  P. Chauhan,et al.  Dihydrofolate reductase as a therapeutic target for infectious diseases: opportunities and challenges. , 2012, Future medicinal chemistry.

[6]  Peter Schuck,et al.  High-precision isothermal titration calorimetry with automated peak-shape analysis. , 2012, Analytical chemistry.

[7]  Clemens Vonrhein,et al.  Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER , 2012, Acta crystallographica. Section D, Biological crystallography.

[8]  G. Schneider,et al.  Structure of PA4019, a putative aromatic acid decarboxylase from Pseudomonas aeruginosa. , 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

[9]  Randy J. Read,et al.  Overview of the CCP4 suite and current developments , 2011, Acta crystallographica. Section D, Biological crystallography.

[10]  Jesse R. Zaneveld,et al.  Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins , 2011, Proceedings of the National Academy of Sciences.

[11]  D. Hilvert,et al.  Directed Evolution of a Protein Container , 2011, Science.

[12]  Ludmila Chistoserdova,et al.  The expanding world of methylotrophic metabolism. , 2009, Annual review of microbiology.

[13]  A. Olson,et al.  AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading , 2009, J. Comput. Chem..

[14]  M. Nissen,et al.  Crystal Structures of NADH:FMN Oxidoreductase (EmoB) at Different Stages of Catalysis*♦ , 2008, Journal of Biological Chemistry.

[15]  U. Stenzel,et al.  PatMaN: rapid alignment of short sequences to large databases , 2008, Bioinform..

[16]  K. Henrick,et al.  Inference of macromolecular assemblies from crystalline state. , 2007, Journal of molecular biology.

[17]  Randy J. Read,et al.  Phaser crystallographic software , 2007, Journal of applied crystallography.

[18]  R. Wilson,et al.  Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut , 2007, Proceedings of the National Academy of Sciences.

[19]  E. Appella,et al.  Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: Application to adaptor protein complexes in cell signaling , 2007, Protein science : a publication of the Protein Society.

[20]  J. Gordon,et al.  A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Gregory J. Crowther,et al.  Analysis of Gene Islands Involved in Methanopterin-Linked C1 Transfer Reactions Reveals New Functions and Provides Evolutionary Insights , 2005, Journal of bacteriology.

[22]  L. Hung,et al.  Crystal structure of a dodecameric FMN‐dependent UbiX‐like decarboxylase (Pad1) from Escherichia coli O157: H7 , 2004, Protein science : a publication of the Protein Society.

[23]  Thomas R. Schneider,et al.  HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs , 2004 .

[24]  Robert C. Edgar,et al.  MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.

[25]  J. Ferry,et al.  Flavin Mononucleotide-Binding Flavoprotein Family in the Domain Archaea , 2004, Journal of bacteriology.

[26]  M. Lidstrom,et al.  Formaldehyde-Detoxifying Role of theTetrahydromethanopterin-Linked Pathway in MethylobacteriumextorquensAM1 , 2003, Journal of bacteriology.

[27]  N. Manoj,et al.  Unusual space-group pseudosymmetry in crystals of human phosphopantothenoylcysteine decarboxylase. , 2003, Acta crystallographica. Section D, Biological crystallography.

[28]  S. Steinbacher,et al.  Structure of MrsD, an FAD-binding protein of the HFCD family. , 2003, Acta crystallographica. Section D, Biological crystallography.

[29]  S. Steinbacher,et al.  Crystal structure of the plant PPC decarboxylase AtHAL3a complexed with an ene-thiol reaction intermediate. , 2003, Journal of molecular biology.

[30]  George M. Sheldrick,et al.  Macromolecular phasing with SHELXE , 2002 .

[31]  S. Steinbacher,et al.  Crystal structure of the peptidyl‐cysteine decarboxylase EpiD complexed with a pentapeptide substrate , 2000, The EMBO journal.

[32]  M. Lidstrom,et al.  Novel Formaldehyde-Activating Enzyme inMethylobacterium extorquens AM1 Required for Growth on Methanol , 2000, Journal of bacteriology.

[33]  S. Steinbacher,et al.  Molecular Characterization of Lantibiotic-synthesizing Enzyme EpiD Reveals a Function for Bacterial Dfp Proteins in Coenzyme A Biosynthesis* , 2000, The Journal of Biological Chemistry.

[34]  B. Maden Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism. , 2000, The Biochemical journal.

[35]  L. Yenush,et al.  The X-ray structure of the FMN-binding protein AtHal3 provides the structural basis for the activity of a regulatory subunit involved in signal transduction. , 2000, Structure.

[36]  M. Fraaije,et al.  Flavoenzymes: diverse catalysts with recurrent features. , 2000, Trends in biochemical sciences.

[37]  Z Dauter,et al.  Novel approach to phasing proteins: derivatization by short cryo-soaking with halides. , 2000, Acta crystallographica. Section D, Biological crystallography.

[38]  G. Sheldrick,et al.  Advances in direct methods for protein crystallography. , 1999, Current opinion in structural biology.

[39]  M. Lidstrom,et al.  Distribution of Tetrahydromethanopterin-Dependent Enzymes in Methylotrophic Bacteria and Phylogeny of Methenyl Tetrahydromethanopterin Cyclohydrolases , 1999, Journal of bacteriology.

[40]  V. Massey,et al.  The Oxidative Half-reaction of Old Yellow Enzyme , 1998, The Journal of Biological Chemistry.

[41]  M. Lidstrom,et al.  C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea. , 1998, Science.

[42]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[43]  B. Schink Energetics of syntrophic cooperation in methanogenic degradation , 1997, Microbiology and molecular biology reviews : MMBR.

[44]  Z. Zhou,et al.  The cumulative electrostatic effect of aromatic stacking interactions and the negative electrostatic environment of the flavin mononucleotide binding site is a major determinant of the reduction potential for the flavodoxin from Desulfovibrio vulgaris [Hildenborough]. , 1996, Biochemistry.

[45]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[46]  H. Jörnvall,et al.  Characterization of the flavin reductase gene (fre) of Escherichia coli and construction of a plasmid for overproduction of the enzyme , 1991, Journal of bacteriology.

[47]  R. Thauer,et al.  Function of methanofuran, tetrahydromethanopterin, and coenzyme F420 in Archaeoglobus fulgidus , 1989, Archives of Microbiology.

[48]  S. Ghisla,et al.  Mechanisms of flavoprotein-catalyzed reactions. , 1989, European journal of biochemistry.

[49]  T. Bobik,et al.  Unusual coenzymes of methanogenesis. , 1985, Annual review of biochemistry.

[50]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[51]  G. Bertani,et al.  STUDIES ON LYSOGENESIS I , 1951, Journal of bacteriology.

[52]  M. Young,et al.  A library of protein cage architectures as nanomaterials. , 2009, Current topics in microbiology and immunology.

[53]  M. Sternberg,et al.  Protein structure prediction on the Web: a case study using the Phyre server , 2009, Nature Protocols.

[54]  Rebecca Page,et al.  Strategies to maximize heterologous protein expression in Escherichia coli with minimal cost. , 2007, Protein expression and purification.

[55]  R. White,et al.  Biosynthesis of the methanogenic cofactors. , 2001, Vitamins and hormones.

[56]  M. Vanoni,et al.  Identifying and quantitating FAD and FMN in simple and in iron-sulfur-containing flavoproteins. , 1999, Methods in molecular biology.

[57]  Randy J Read,et al.  Electronic Reprint Biological Crystallography Phenix: Building New Software for Automated Crystallographic Structure Determination Biological Crystallography Phenix: Building New Software for Automated Crystallographic Structure Determination , 2022 .

[58]  Jay Painter,et al.  Electronic Reprint Biological Crystallography Optimal Description of a Protein Structure in Terms of Multiple Groups Undergoing Tls Motion Biological Crystallography Optimal Description of a Protein Structure in Terms of Multiple Groups Undergoing Tls Motion , 2005 .