Small‐angle scattering for structural biology—Expanding the frontier while avoiding the pitfalls
暂无分享,去创建一个
[1] Dmitri I. Svergun,et al. Electronic Reprint Applied Crystallography Dammif, a Program for Rapid Ab-initio Shape Determination in Small-angle Scattering Applied Crystallography Dammif, a Program for Rapid Ab-initio Shape Determination in Small-angle Scattering , 2022 .
[2] Jill Trewhella,et al. MULCh: modules for the analysis of small-angle neutron contrast variation data from biomolecular assemblies , 2008 .
[3] A. Brunger. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .
[4] M. Kozak,et al. Glucose isomerase from Streptomyces rubiginosus– potential molecular weight standard for small-angle X-ray scattering , 2005 .
[5] W. R. Krigbaum,et al. Molecular conformation of egg-white lysozyme and bovine alpha-lactalbumin in solution. , 1970, Biochemistry.
[6] Jill Trewhella,et al. Small-angle X-ray scattering reveals the N-terminal domain organization of cardiac myosin binding protein C. , 2008, Journal of molecular biology.
[7] Maxim V. Petoukhov,et al. ATSAS 2.1, a program package for small‐angle scattering data analysis , 2006 .
[8] J. Trewhella,et al. Comparison of the crystal and solution structures of calmodulin and troponin C. , 1988, Biochemistry.
[9] Lin Yang,et al. SARS CoV main proteinase: The monomer-dimer equilibrium dissociation constant. , 2006, Biochemistry.
[10] John A Tainer,et al. A flexible interface between DNA ligase and PCNA supports conformational switching and efficient ligation of DNA. , 2006, Molecular cell.
[11] P. B. Moore,et al. Small-angle scattering. Information content and error analysis , 1980 .
[12] Roland P. May,et al. Modular Structure of Solubilized Human Apolipoprotein B-100 , 2006, Journal of Biological Chemistry.
[13] Rex P. Hjelm,et al. The small-angle approximation of X-ray and neutron scatter from rigid rods of non-uniform cross section of finite length , 1985 .
[14] I. Polikarpov,et al. Determination of the molecular weight of proteins in solution from a single small-angle X-ray scattering measurement on a relative scale , 2010 .
[15] John A Tainer,et al. Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis. , 2009, Journal of molecular biology.
[16] R P May,et al. Inter‐protein distances within the large subunit from Escherichia coli ribosomes. , 1992, The EMBO journal.
[17] Jill Trewhella,et al. Histidine kinase regulation by a cyclophilin-like inhibitor. , 2008, Journal of molecular biology.
[18] Shuji Akiyama,et al. Radiation damage to a protein solution, detected by synchrotron X-ray small-angle scattering: dose-related considerations and suppression by cryoprotectants. , 2004, Journal of synchrotron radiation.
[19] Alexander Bergmann,et al. SAXS experiments on absolute scale with Kratky systems using water as a secondary standard , 2000 .
[20] A. Brünger. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures , 1992, Nature.
[21] Jill Trewhella,et al. Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering. , 2007, Structure.
[22] J F Pardon,et al. Low-angle neutron scattering from chromatin subunit particles. , 1975, Nucleic acids research.
[23] M. Koch,et al. Effects of urea and trimethylamine-N-oxide (TMAO) on the interactions of lysozyme in solution. , 2005, Biophysical journal.
[24] P. Focia,et al. Structural basis for synaptic adhesion mediated by neuroligin-neurexin interactions , 2008, Nature Structural &Molecular Biology.
[25] T. Richmond,et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.
[26] J A Langer,et al. A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli. , 1987, Science.
[27] Mark W Maciejewski,et al. Structure and mechanism of action of Sda, an inhibitor of the histidine kinases that regulate initiation of sporulation in Bacillus subtilis. , 2004, Molecular cell.
[28] Jill Trewhella,et al. Structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis and insights into its solution state. , 2009, Acta crystallographica. Section D, Biological crystallography.
[29] M. Blackledge,et al. Structural characterization of flexible proteins using small-angle X-ray scattering. , 2007, Journal of the American Chemical Society.
[30] John A Tainer,et al. The structure of the MAP2K MEK6 reveals an autoinhibitory dimer. , 2009, Structure.
[31] Jill Trewhella,et al. Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data. , 2005, Journal of the American Chemical Society.
[32] Jill Trewhella,et al. The structure of the KinA-Sda complex suggests an allosteric mechanism of histidine kinase inhibition. , 2007, Journal of molecular biology.
[33] Jill Trewhella,et al. Cardiac myosin-binding protein C decorates F-actin: Implications for cardiac function , 2008, Proceedings of the National Academy of Sciences.
[34] Dmitri I Svergun,et al. Conformation of polypyrimidine tract binding protein in solution. , 2006, Structure.
[35] M Nilges,et al. A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints , 2008, Journal of biomolecular NMR.
[36] D. Svergun,et al. Small-angle scattering studies of biological macromolecules in solution , 2003 .
[37] Greg L. Hura,et al. Structure and flexibility within proteins as identified through small angle X-ray scattering. , 2009, General physiology and biophysics.
[38] Jill Trewhella,et al. Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints , 2008, Journal of biomolecular NMR.
[39] D. Blumenthal,et al. Changes in the structure of calmodulin induced by a peptide based on the calmodulin-binding domain of myosin light chain kinase. , 1989, Biochemistry.
[40] Dmitri I. Svergun,et al. Uniqueness of ab initio shape determination in small-angle scattering , 2003 .
[41] Matthew J Bick,et al. How to switch off a histidine kinase: crystal structure of Geobacillus stearothermophilus KinB with the inhibitor Sda. , 2009, Journal of molecular biology.
[42] Sow-Hsin Chen,et al. [7] Structure and interactions of proteins in solution studied by small-angle neutron scattering , 1986 .
[43] Dmitri I Svergun,et al. The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure. , 2005, Molecular cell.
[44] Yuya Miyamoto,et al. Structural analysis of lipocalin-type prostaglandin D synthase complexed with biliverdin by small-angle X-ray scattering and multi-dimensional NMR. , 2010, Journal of structural biology.
[45] Chi-Huey Wong,et al. Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands. , 2009, Journal of molecular biology.
[46] Dmitri I Svergun,et al. Global rigid body modeling of macromolecular complexes against small-angle scattering data. , 2005, Biophysical journal.
[47] James L Cole,et al. Analysis of PKR structure by small-angle scattering. , 2009, Journal of molecular biology.
[48] D I Svergun,et al. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. , 1999, Biophysical journal.
[49] T. Steitz,et al. The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. , 2000, Science.
[50] Christopher B. Stanley,et al. Small-angle neutron scattering and the errors in protein structures that arise from uncorrected background and intermolecular interactions , 2008 .
[51] James L Cole,et al. Unactivated PKR exists in an open conformation capable of binding nucleotides. , 2006, Biochemistry.
[52] Dmitri I. Svergun,et al. Determination of the regularization parameter in indirect-transform methods using perceptual criteria , 1992 .
[53] D I Svergun,et al. Protein hydration in solution: experimental observation by x-ray and neutron scattering. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[54] R. Hodges,et al. 4Ca2+.troponin C forms dimers in solution at neutral pH that dissociate upon binding various peptides: small-angle X-ray scattering studies of peptide-induced structural changes. , 1992, Biochemistry.
[55] Dmitri I Svergun,et al. Atomic Structures of Two Novel Immunoglobulin-like Domain Pairs in the Actin Cross-linking Protein Filamin* , 2009, The Journal of Biological Chemistry.
[56] M Gerstein,et al. Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly. , 2005, Journal of molecular biology.
[57] W. Burkholder,et al. The histidine kinase inhibitor Sda binds near the site of autophosphorylation and may sterically hinder autophosphorylation and phosphotransfer to Spo0F , 2009, Molecular microbiology.
[58] Dmitri I. Svergun,et al. Automated matching of high- and low-resolution structural models , 2001 .
[59] Cameron Neylon,et al. Small angle neutron and X-ray scattering in structural biology: recent examples from the literature , 2008, European Biophysics Journal.
[60] D. Svergun,et al. CRYSOL : a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates , 1995 .
[61] Ron D. Appel,et al. ExPASy: the proteomics server for in-depth protein knowledge and analysis , 2003, Nucleic Acids Res..
[62] Dmitri I. Svergun,et al. PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .
[63] Ad Bax,et al. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data , 2008, Journal of biomolecular NMR.
[64] Torsten Schwede,et al. BIOINFORMATICS Bioinformatics Advance Access published November 12, 2005 The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling , 2022 .
[65] Dierk Niessing,et al. X-ray structure of Pur-α reveals a Whirly-like fold and an unusual nucleic-acid binding surface , 2009, Proceedings of the National Academy of Sciences.