Comparative computational genomic analysis between wild and domesticated species of cacao and coffee
暂无分享,去创建一个
S. M. Jazayeri | Cristian Zambrano-Vega | R. Villamar-Torres | Byron Oviedo Bayas | Yenny Torres-Navarreete | Seyed Mehdi
[1] C. You,et al. Organization and regulation of the apple SUMOylation system under salt and ABA. , 2022, Plant physiology and biochemistry : PPB.
[2] David John Lary,et al. Changes in Gene Expression in Leaves of Cacao Genotypes Resistant and Susceptible to Phytophthora palmivora Infection , 2022, Frontiers in Plant Science.
[3] Abdullah,et al. The BAHD Gene Family in Cacao (Theobroma cacao, Malvaceae): Genome-Wide Identification and Expression Analysis , 2021, Frontiers in Ecology and Evolution.
[4] L. Baroni,et al. Plant Foods Rich in Antioxidants and Human Cognition: A Systematic Review , 2021, Antioxidants.
[5] Peter B. McGarvey,et al. UniProt: the universal protein knowledgebase in 2021 , 2020, Nucleic Acids Res..
[6] T. Davis,et al. Editorial: Wild Plants as Source of New Crops , 2020, Frontiers in Plant Science.
[7] W. Schwab,et al. Characterization of the UDP-glycosyltransferase UGT72 Family in Poplar and Identification of Genes Involved in the Glycosylation of Monolignols , 2020, International journal of molecular sciences.
[8] R. Yockteng,et al. Exploring the diversity and distribution of crop wild relatives of cacao (Theobroma cacao L.) in Colombia , 2020, Genetic Resources and Crop Evolution.
[9] Carlos Vicente Castro Pincay,et al. Aspectos sociales y económicos: caso productores de café en la provincia El Oro , 2020 .
[10] G. Valle,et al. A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm , 2020, Scientific Reports.
[11] S. M. Jazayeri,et al. Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors , 2020, Bragantia.
[12] Can Holyavkin,et al. Evolutionary engineering and molecular characterization of a caffeine-resistant Saccharomyces cerevisiae strain , 2019, World Journal of Microbiology and Biotechnology.
[13] T. Baum,et al. A role for Arabidopsis growth-regulating factors 1 and 3 in growth–stress antagonism , 2019, Journal of experimental botany.
[14] C. Delwiche,et al. Reconstructing trait evolution in plant evo–devo studies , 2019, Current Biology.
[15] Rémi Hess. Journal , 2019, Vocabulaire des histoires de vie et de la recherche biographique.
[16] E. Morańska,et al. Exogenous melatonin stimulated Amaryllidaceae alkaloid biosynthesis in in vitro cultures of Leucojum aestivum L , 2019, Industrial Crops and Products.
[17] M. B. Arnao,et al. Melatonin and reactive oxygen and nitrogen species: a model for the plant redox network , 2019, Melatonin Research.
[18] A. Salamah,et al. Analysis of AGAMOUS Gene Expression in Hibiscus rosasinensis L. Single Pink, Crested Peach, and Double Orange Flowers , 2019, Journal of Physics: Conference Series.
[19] M. Symonds,et al. Combining Evolutionary Inference and Metabolomics to Identify Plants With Medicinal Potential , 2019, Front. Ecol. Evol..
[20] Q. Xia,et al. OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species , 2019, Nucleic Acids Res..
[21] M. Kirkpatrick,et al. The evolution of hybrid fitness during speciation , 2019, PLoS genetics.
[22] N. van den Berg,et al. The NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) and Related Family: Mechanistic Insights in Plant Disease Resistance , 2019, Front. Plant Sci..
[23] D. Crouzillat,et al. Development and evaluation of a genome‐wide Coffee 8.5K SNP array and its application for high‐density genetic mapping and for investigating the origin of Coffea arabica L. , 2019, Plant biotechnology journal.
[24] J. M. Seguí-Simarro,et al. Embryogenic competence of microspores is associated with their ability to form a callosic, osmoprotective subintinal layer , 2019, Journal of experimental botany.
[25] G. Shi,et al. Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency , 2019, BMC Plant Biology.
[26] G. Shi,et al. Comparative transcriptome analysis reveals gene network regulating cadmium uptake and translocation in peanut roots under iron deficiency , 2019, BMC Plant Biology.
[27] L. Marks,et al. The genetic basis of disease , 2018, Essays in biochemistry.
[28] A. Furtado,et al. Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content , 2018, Plant biotechnology journal.
[29] F. Damatta,et al. Physiological and Agronomic Performance of the Coffee Crop in the Context of Climate Change and Global Warming: A Review. , 2018, Journal of agricultural and food chemistry.
[30] A. Schofield,et al. Degradation of the stress-responsive enzyme formate dehydrogenase by the RING-type E3 ligase Keep on Going and the ubiquitin 26S proteasome system , 2017, Plant Molecular Biology.
[31] N. Song,et al. NaPDR1 and NaPDR1-like are essential for the resistance of Nicotiana attenuata against fungal pathogen Alternaria alternata , 2018, Plant diversity.
[32] Zhenli He,et al. Heavy metal accumulation in leaves and beans of cacao (Theobroma cacao L.) in major cacao growing regions in Peru. , 2017, The Science of the total environment.
[33] W. Boerjan,et al. Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar1[OPEN] , 2017, Plant Physiology.
[34] Y. van de Peer,et al. Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants , 2017, Genome biology and evolution.
[35] R. Eils,et al. Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri , 2016, BMC Genomics.
[36] M. Schranz,et al. Whole‐genome duplications followed by tandem duplications drive diversification of the protein modifier SUMO in Angiosperms , 2016, The New phytologist.
[37] S. Chattopadhyay,et al. Sequencing, De novo Assembly, Functional Annotation and Analysis of Phyllanthus amarus Leaf Transcriptome Using the Illumina Platform , 2016, Front. Plant Sci..
[38] I. Ezcurra,et al. WD40-Repeat Proteins in Plant Cell Wall Formation: Current Evidence and Research Prospects , 2015, Front. Plant Sci..
[39] B. Mueller‐Roeber,et al. Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. , 2015, Molecular plant.
[40] S. M. Jazayeri,et al. Physiological effects of water deficit on two oil palm (Elaeis guineensis Jacq.) genotypes , 2015 .
[41] Kunihiko Watanabe,et al. Multidrug resistance transporters Snq2p and Pdr5p mediate caffeine efflux in Saccharomyces cerevisiae , 2015, Bioscience, biotechnology, and biochemistry.
[42] P. Swain,et al. A mechanistic link between cellular trade-offs, gene expression and growth , 2015, bioRxiv.
[43] M. Nuruzzaman,et al. Plant pleiotropic drug resistance transporters: transport mechanism, gene expression, and function. , 2014, Journal of integrative plant biology.
[44] Lijia Xu,et al. Identification, characterization, and utilization of single copy genes in 29 angiosperm genomes , 2014, BMC Genomics.
[45] D. Cros,et al. Genetic Architecture of Palm Oil Fatty Acid Composition in Cultivated Oil Palm (Elaeis guineensis Jacq.) Compared to Its Wild Relative E. oleifera (H.B.K) Cortés , 2014, PloS one.
[46] S. Mccouch,et al. Segregation analysis of molecular markers in a population derived from Coffea liberica Hiern x C. eugenioides L. , 2014 .
[47] Young-soon Kim,et al. Elevated production of melatonin in transgenic rice seeds expressing rice tryptophan decarboxylase , 2014, Journal of pineal research.
[48] S. Kotchoni,et al. GIGANTUS1 (GTS1), a member of Transducin/WD40 protein superfamily, controls seed germination, growth and biomass accumulation through ribosome-biogenesis protein interactions in Arabidopsis thaliana , 2014, BMC Plant Biology.
[49] John Ralph,et al. Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis , 2013, Science.
[50] Yanming Zhu,et al. GsSRK, a G-type lectin S-receptor-like serine/threonine protein kinase, is a positive regulator of plant tolerance to salt stress. , 2013, Journal of plant physiology.
[51] Bart Muys,et al. Genetic variation and risks of introgression in the wild Coffea arabica gene pool in south-western Ethiopian montane rainforests , 2012, Evolutionary applications.
[52] J. Ohlrogge,et al. Identification of an Arabidopsis Fatty Alcohol:Caffeoyl-Coenzyme A Acyltransferase Required for the Synthesis of Alkyl Hydroxycinnamates in Root Waxes1[W][OA] , 2012, Plant Physiology.
[53] Peter Osobase Aikpokpodion. Phenology of flowering in cacao (Theobroma cacao) and its related species in Nigeria , 2012 .
[54] A. Warzybok,et al. CsPDR8 and CsPDR12, two of the 16 pleiotropic drug resistance genes in cucumber, are transcriptionally regulated by phytohormones and auxin herbicide in roots , 2012, Plant Growth Regulation.
[55] M. Combes,et al. Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments , 2011, Plant Molecular Biology.
[56] J. Poulain,et al. The genome of Theobroma cacao , 2011, Nature Genetics.
[57] Antoni Sułek. “To America!” , 2010 .
[58] Romina Doodnath. A study of intergeneric hybridization between Theobroma cacao L. and Herrania species. , 2008 .
[59] Yu Zhao,et al. Purification, cloning, functional expression and characterization of perakine reductase: the first example from the AKR enzyme family, extending the alkaloidal network of the plant Rauvolfia , 2008, Plant Molecular Biology.
[60] V. De Luca,et al. The Leaf Epidermome of Catharanthus roseus Reveals Its Biochemical Specialization[W][OA] , 2008, The Plant Cell Online.
[61] Nan Wang,et al. AgBase: a unified resource for functional analysis in agriculture , 2006, Nucleic Acids Res..
[62] A. Steptoe,et al. Association between coffee consumption and markers of inflammation and cardiovascular function during mental stress , 2006, Journal of hypertension.
[63] Nan Wang,et al. AgBase: a functional genomics resource for agriculture , 2006, BMC Genomics.
[64] M. Boutry,et al. NpPDR1, a Pleiotropic Drug Resistance-Type ATP-Binding Cassette Transporter from Nicotiana plumbaginifolia, Plays a Major Role in Plant Pathogen Defense1 , 2005, Plant Physiology.
[65] Xueyan Ma,et al. Acetyltransfer in natural product biosynthesis--functional cloning and molecular analysis of vinorine synthase. , 2004, Bioorganic & medicinal chemistry.
[66] M. Schuler,et al. Gene regulation by low level UV-B radiation: identification by DNA array analysis , 2002, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.
[67] J. Dangl,et al. The Arabidopsis thaliana RPM1 disease resistance gene product is a peripheral plasma membrane protein that is degraded coincident with the hypersensitive response. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[68] D. Crouzillat,et al. Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation. , 2021, PloS one.
[69] S. M. Jazayeri,et al. Environmental Factors Enhance Production of Plant Secondary Metabolites Toward More Tolerance and Human Health: Cocoa and Coffee Two Model Species , 2021, Innovations in Biotechnology for a Sustainable Future.
[70] A. Göçmen,et al. The protective role of melatonin against the effect of caffeine on embryonic kidney , 2020 .
[71] Jaakko Kangasjärvi,et al. Rapid Responses to Abiotic Stress: Priming the Landscape for the Signal Transduction Network. , 2019, Trends in plant science.
[72] M. Mattson,et al. Impact of Coffee and Cacao Purine Metabolites on Neuroplasticity and Neurodegenerative Disease , 2018, Neurochemical Research.
[73] H. Romero,et al. Response of various oil palm materials (Elaeis guineensis and Elaeis oleifera × Elaeis guineensis interspecific hybrids) to bud rot disease in the southwestern oil palm-growing area of Colombia , 2016 .
[74] M. Combes,et al. Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments , 2011, Plant Molecular Biology.
[75] C. R. Sousa Silva,et al. Phylogenetic analysis of Theobroma (Sterculiaceae) based on Kunitz-like trypsin inhibitor sequences , 2004, Plant Systematics and Evolution.
[76] J. Beynon,et al. RPP13 is a simple locus in Arabidopsis thaliana for alleles that specify downy mildew resistance to different avirulence determinants in Peronospora parasitica. , 2000, The Plant journal : for cell and molecular biology.
[77] B. A. Whitlock,et al. Phylogenetic Relationships of Theobroma and Herrania (Sterculiaceae) Based on Sequences of the Nuclear Gene Vicilin , 1999 .