Getting the Message? Native Reactive Electrophiles Pass Two Out of Three Thresholds to be Bona Fide Signaling Mediators

Precision cell signaling activities of reactive electrophilic species (RES) are arguably among the most poorly‐understood means to transmit biological messages. Latest research implicates native RES to be a chemically‐distinct subset of endogenous redox signals that influence cell decision making through non‐enzyme‐assisted modifications of specific proteins. Yet, fundamental questions remain regarding the role of RES as bona fide second messengers. Here, we lay out three sets of criteria we feel need to be met for RES to be considered as true cellular signals that directly mediate information transfer by modifying “first‐responding” sensor proteins. We critically assess the available evidence and define the extent to which each criterion has been fulfilled. Finally, we offer some ideas on the future trajectories of the electrophile signaling field taking inspiration from work that has been done to understand canonical signaling mediators. Also see the video abstract here: https://youtu.be/rG7o0clVP0c

[1]  J. Holder,et al.  PPAR-γ agonists: therapeutic role in diabetes, inflammation and cancer , 2000 .

[2]  T. Finkel Redox‐dependent signal transduction , 2000, FEBS letters.

[3]  E. Warabi,et al.  Nrf2 as an Endothelial Mechanosensitive Transcription Factor: Going With the Flow. , 2016, Hypertension.

[4]  E. Hardeman,et al.  Isoform sorting and the creation of intracellular compartments. , 1998, Annual review of cell and developmental biology.

[5]  J. Frasor,et al.  Dimethyl Fumarate Inhibits the Nuclear Factor κB Pathway in Breast Cancer Cells by Covalent Modification of p65 Protein* , 2015, The Journal of Biological Chemistry.

[6]  D. Ripoll,et al.  Role of copper,zinc-superoxide dismutase in catalyzing nitrotyrosine formation in murine liver. , 2008, Free radical biology & medicine.

[7]  Ying Chen,et al.  Chemoproteomic profiling of targets of lipid-derived electrophiles by bioorthogonal aminooxy probe , 2017, Redox biology.

[8]  Dae-Yeul Yu,et al.  Inactivation of Peroxiredoxin I by Phosphorylation Allows Localized H2O2 Accumulation for Cell Signaling , 2010, Cell.

[9]  N. Chandel,et al.  ROS Function in Redox Signaling and Oxidative Stress , 2014, Current Biology.

[10]  Y. Aye,et al.  On-Demand Targeting: Investigating Biology with Proximity-Directed Chemistry , 2016, Journal of the American Chemical Society.

[11]  D. Liebler,et al.  Quantitative Chemoproteomics for Site-Specific Analysis of Protein Alkylation by 4-Hydroxy-2-Nonenal in Cells , 2015, Analytical chemistry.

[12]  P. Boor,et al.  Endothelial glutathione-S-transferase A4-4 protects against oxidative stress and modulates iNOS expression through NF-kappaB translocation. , 2008, Toxicology and applied pharmacology.

[13]  D. Liebler,et al.  Chemoproteomics Reveals Chemical Diversity and Dynamics of 4-Oxo-2-nonenal Modifications in Cells* , 2017, Molecular & Cellular Proteomics.

[14]  R. Laskowski,et al.  Rising levels of atmospheric oxygen and evolution of Nrf2 , 2016, Scientific Reports.

[15]  G. Cohen,et al.  Signaling and cytotoxic functions of 4-hydroxyalkenals. , 2010, American journal of physiology. Endocrinology and metabolism.

[16]  S. Srivastava,et al.  Molecular targets of isothiocyanates in cancer: recent advances. , 2014, Molecular nutrition & food research.

[17]  Y. Ye,et al.  Reversible inactivation of deubiquitinases by reactive oxygen species in vitro and in cells , 2013, Nature Communications.

[18]  N. Hattori,et al.  Immunohistochemical detection of 4-hydroxynonenal protein adducts in Parkinson disease. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[19]  G. Aldini,et al.  Carnosine and related dipeptides as quenchers of reactive carbonyl species: From structural studies to therapeutic perspectives , 2005, BioFactors.

[20]  I. Mori,et al.  Lifespan extension by peroxidase and dual oxidase-mediated ROS signaling through pyrroloquinoline quinone in C. elegans , 2017, Journal of Cell Science.

[21]  Melissa L. Kemp,et al.  Spatially-resolved intracellular sensing of hydrogen peroxide in living cells , 2015, Scientific Reports.

[22]  P. Reddanna,et al.  Exploration of binding site pattern in arachidonic acid metabolizing enzymes, Cyclooxygenases and Lipoxygenases , 2015, BMC Research Notes.

[23]  R. Copeland,et al.  Drug–target residence time and its implications for lead optimization , 2007, Nature Reviews Drug Discovery.

[24]  M. Long,et al.  The Die Is Cast: Precision Electrophilic Modifications Contribute to Cellular Decision Making , 2016, Chemical research in toxicology.

[25]  F. J. Romero,et al.  4-Hydroxynonenal inhibits glutathione peroxidase: protection by glutathione. , 1999, Free radical biology & medicine.

[26]  D. Petersen,et al.  An overview of the chemistry and biology of reactive aldehydes. , 2013, Free radical biology & medicine.

[27]  M. Hung,et al.  HER-2/neu Blocks Tumor Necrosis Factor-induced Apoptosis via the Akt/NF-κB Pathway* , 2000, The Journal of Biological Chemistry.

[28]  A. Landar,et al.  Accumulation of 15-deoxy-delta(12,14)-prostaglandin J2 adduct formation with Keap1 over time: effects on potency for intracellular antioxidant defence induction. , 2008, The Biochemical journal.

[29]  C. Winterbourn,et al.  Redox potential and peroxide reactivity of human peroxiredoxin 3. , 2009, Biochemistry.

[30]  V. Gladyshev,et al.  Role of reactive oxygen species-mediated signaling in aging. , 2013, Antioxidants & redox signaling.

[31]  Takahiro Shibata,et al.  Differential Responses of the Nrf2-Keap1 System to Laminar and Oscillatory Shear Stresses in Endothelial Cells* , 2005, Journal of Biological Chemistry.

[32]  Yi Zhao,et al.  Akt3 is a privileged first responder in isozyme-specific electrophile response. , 2017, Nature chemical biology.

[33]  William H. Bisson,et al.  Site-specific proteomic analysis of lipoxidation adducts in cardiac mitochondria reveals chemical diversity of 2-alkenal adduction. , 2011, Journal of proteomics.

[34]  Y. Aye,et al.  Temporally controlled targeting of 4-hydroxynonenal to specific proteins in living cells. , 2013, Journal of the American Chemical Society.

[35]  M. Murphy,et al.  Redox Homeostasis and Mitochondrial Dynamics. , 2015, Cell metabolism.

[36]  P. Nagy Kinetics and mechanisms of thiol-disulfide exchange covering direct substitution and thiol oxidation-mediated pathways. , 2013, Antioxidants & redox signaling.

[37]  N. Chandel,et al.  ROS-dependent signal transduction. , 2015, Current opinion in cell biology.

[38]  Michael P. Myers,et al.  Redox regulation of protein tyrosine phosphatase 1B involves a sulphenyl-amide intermediate , 2003, Nature.

[39]  Michael P. Murphy,et al.  How mitochondria produce reactive oxygen species , 2008, The Biochemical journal.

[40]  D. V. Vander Jagt,et al.  Inactivation of glutathione reductase by 4-hydroxynonenal and other endogenous aldehydes. , 1997, Biochemical pharmacology.

[41]  H. Masutani,et al.  Thioredoxin as a Molecular Target of Cyclopentenone Prostaglandins* , 2003, Journal of Biological Chemistry.

[42]  A. Ashworth,et al.  Haploinsufficiency for tumour suppressor genes: when you don't need to go all the way. , 2004, Biochimica et biophysica acta.

[43]  T. Teramura,et al.  Reactive oxygen species induce Cox-2 expression via TAK1 activation in synovial fibroblast cells , 2015, FEBS open bio.

[44]  Mingjie Zhang,et al.  Il-1β and Reactive Oxygen Species Differentially Regulate Neutrophil Directional Migration and Basal Random Motility in a Zebrafish Injury–Induced Inflammation Model , 2014, The Journal of Immunology.

[45]  M. Okada,et al.  Pivotal role for ROS activation of p38 MAPK in the control of differentiation and tumor-initiating capacity of glioma-initiating cells. , 2014, Stem cell research.

[46]  Kate S. Carroll,et al.  Molecular Basis for Redox Activation of Epidermal Growth Factor Receptor Kinase. , 2016, Cell chemical biology.

[47]  Hening Lin,et al.  SIRT2 Reverses 4-Oxononanoyl Lysine Modification on Histones. , 2016, Journal of the American Chemical Society.

[48]  Q. Lin,et al.  A generalizable platform for interrogating target- and signal-specific consequences of electrophilic modifications in redox-dependent cell signaling. , 2015, Journal of the American Chemical Society.

[49]  C. Winterbourn,et al.  Reconciling the chemistry and biology of reactive oxygen species. , 2008, Nature chemical biology.

[50]  S. Zhang,et al.  Ube2V2 Is a Rosetta Stone Bridging Redox and Ubiquitin Codes, Coordinating DNA Damage Responses , 2018, ACS central science.

[51]  Lawrence J. Marnett,et al.  Systems Analysis of Protein Modification and Cellular Responses Induced by Electrophile Stress , 2010, Accounts of chemical research.

[52]  R. Andriantsitohaina,et al.  Reactive nitrogen species: molecular mechanisms and potential significance in health and disease. , 2009, Antioxidants & redox signaling.

[53]  Q. Hao,et al.  Histone Ketoamide Adduction by 4-Oxo-2-nonenal Is a Reversible Posttranslational Modification Regulated by Sirt2. , 2017, ACS chemical biology.

[54]  H. Sies,et al.  Oxidative stress: a concept in redox biology and medicine , 2015, Redox biology.

[55]  Y. Aye,et al.  Privileged Electrophile Sensors: A Resource for Covalent Drug Development. , 2017, Cell chemical biology.

[56]  Yingzi Zhao,et al.  Vascular nitric oxide: Beyond eNOS. , 2015, Journal of pharmacological sciences.

[57]  T. Kavanagh,et al.  Stereoselective effects of 4-hydroxynonenal in cultured mouse hepatocytes. , 2010, Chemical research in toxicology.

[58]  Tianxin Yang,et al.  Nitric oxide stimulates COX-2 expression in cultured collecting duct cells through MAP kinases and superoxide but not cGMP. , 2006, American journal of physiology. Renal physiology.

[59]  A. Matsuzawa Thioredoxin and redox signaling: Roles of the thioredoxin system in control of cell fate. , 2017, Archives of biochemistry and biophysics.

[60]  T. Dick,et al.  Dissecting Redox Biology Using Fluorescent Protein Sensors. , 2016, Antioxidants & redox signaling.

[61]  Y. Aye,et al.  Subcellular Redox Targeting: Bridging in Vitro and in Vivo Chemical Biology. , 2017, ACS chemical biology.

[62]  J. Hayes,et al.  The glutathione S-transferase supergene family: regulation of GST and the contribution of the isoenzymes to cancer chemoprotection and drug resistance. , 1995, Critical reviews in biochemistry and molecular biology.

[63]  W. Wheaton,et al.  Mitochondrial metabolism and ROS generation are essential for Kras-mediated tumorigenicity , 2010, Proceedings of the National Academy of Sciences.

[64]  M. Reilly,et al.  Biosynthesis of 15-deoxy-delta12,14-PGJ2 and the ligation of PPARgamma. , 2003, The Journal of clinical investigation.

[65]  David R. Kaplan,et al.  Regulation of Neuronal Survival by the Serine-Threonine Protein Kinase Akt , 1997, Science.

[66]  Daniel A. Urul,et al.  Precision Electrophile Tagging in Caenorhabditis elegans , 2017, Biochemistry.

[67]  T. Hunter The age of crosstalk: phosphorylation, ubiquitination, and beyond. , 2007, Molecular cell.

[68]  T. Montine,et al.  Hydroxynonenal adducts indicate a role for lipid peroxidation in neocortical and brainstem Lewy bodies in humans , 2002, Neuroscience Letters.

[69]  Kristie L. Rose,et al.  Stable Histone Adduction by 4-Oxo-2-nonenal: A Potential Link between Oxidative Stress and Epigenetics , 2014, Journal of the American Chemical Society.

[70]  Bryan C Dickinson,et al.  Chemistry and biology of reactive oxygen species in signaling or stress responses. , 2011, Nature chemical biology.

[71]  K. Lukyanov,et al.  Genetically encoded fluorescent redox sensors. , 2014, Biochimica et biophysica acta.

[72]  J. Corbin,et al.  cGMP-Dependent Protein Kinases and cGMP Phosphodiesterases in Nitric Oxide and cGMP Action , 2010, Pharmacological Reviews.

[73]  A. Nègre-Salvayre,et al.  Astrocytes Accumulate 4-Hydroxynonenal Adducts in Murine Scrapie and Human Creutzfeldt–Jakob Disease , 2002, Neurobiology of Disease.

[74]  P. Cole,et al.  Catalytic mechanisms and regulation of protein kinases. , 2014, Methods in enzymology.

[75]  Stefano Forli,et al.  Global profiling of lysine reactivity and ligandability in the human proteome. , 2017, Nature chemistry.

[76]  Michael J. Oehler,et al.  Peroxiredoxin-2 and STAT3 form a redox relay for H2O2 signaling. , 2015, Nature chemical biology.

[77]  T. Kuwana,et al.  Sphingolipid Metabolism Cooperates with BAK and BAX to Promote the Mitochondrial Pathway of Apoptosis , 2012, Cell.

[78]  Paul H. Huang,et al.  b-TrCP 1 Is a Vacillatory Regulator of Wnt Signaling Graphical Abstract Highlights , 2017 .

[79]  J. Riemer,et al.  In yeast redistribution of Sod1 to the mitochondrial intermembrane space provides protection against respiration derived oxidative stress. , 2010, Biochemical and biophysical research communications.

[80]  B. Cravatt,et al.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry. , 2008, Annual review of biochemistry.

[81]  T. Dick,et al.  Fluorescent protein-based redox probes. , 2010, Antioxidants & redox signaling.

[82]  Daniel C. Liebler,et al.  Alkylation Damage by Lipid Electrophiles Targets Functional Protein Systems* , 2014, Molecular & Cellular Proteomics.

[83]  D. Speijer Being right on Q: shaping eukaryotic evolution , 2016, The Biochemical journal.

[84]  R. Banerjee Redox outside the Box: Linking Extracellular Redox Remodeling with Intracellular Redox Metabolism* , 2011, The Journal of Biological Chemistry.

[85]  Yi Zhao,et al.  T-REX on-demand redox targeting in live cells , 2016, Nature Protocols.

[86]  C. Winterbourn,et al.  Thiol chemistry and specificity in redox signaling. , 2008, Free radical biology & medicine.

[87]  Kate S. Carroll,et al.  Cysteine-Mediated Redox Signaling: Chemistry, Biology, and Tools for Discovery , 2013, Chemical reviews.

[88]  D. Petersen,et al.  Reactions of 4-hydroxynonenal with proteins and cellular targets. , 2004, Free radical biology & medicine.

[89]  Y. Aye,et al.  Substoichiometric Hydroxynonenylation of a Single Protein Recapitulates Whole-Cell-Stimulated Antioxidant Response , 2014, Journal of the American Chemical Society.

[90]  L. Poole,et al.  Discovering mechanisms of signaling-mediated cysteine oxidation. , 2008, Current opinion in chemical biology.

[91]  A. Hiratsuka,et al.  4-Hydroxy-2(E)-nonenal enantiomers: (S)-selective inactivation of glyceraldehyde-3-phosphate dehydrogenase and detoxification by rat glutathione S-transferase A4-4. , 2000, The Biochemical journal.

[92]  J. Yodoi,et al.  Stereochemical Configuration of 4-Hydroxy-2-nonenal-Cysteine Adducts and Their Stereoselective Formation in a Redox-regulated Protein* , 2009, The Journal of Biological Chemistry.

[93]  D. Petersen,et al.  Covalent modification of amino acid nucleophiles by the lipid peroxidation products 4-hydroxy-2-nonenal and 4-oxo-2-nonenal. , 2002, Chemical research in toxicology.

[94]  C. Furdui,et al.  Biological chemistry and functionality of protein sulfenic acids and related thiol modifications , 2016, Free radical research.

[95]  L. Marnett,et al.  Induction of apoptosis in colorectal carcinoma cells treated with 4-hydroxy-2-nonenal and structurally related aldehydic products of lipid peroxidation. , 2004, Chemical research in toxicology.

[96]  Insuk Lee,et al.  Characterising and Predicting Haploinsufficiency in the Human Genome , 2010, PLoS genetics.

[97]  Jason G. Harrison,et al.  Small molecule signaling agents: the integrated chemistry and biochemistry of nitrogen oxides, oxides of carbon, dioxygen, hydrogen sulfide, and their derived species. , 2012, Chemical research in toxicology.

[98]  M. McMahon,et al.  Keap1 perceives stress via three sensors for the endogenous signaling molecules nitric oxide, zinc, and alkenals , 2010, Proceedings of the National Academy of Sciences.

[99]  M. Picklo,et al.  Trans-4-hydroxy-2-hexenal, a product of n-3 fatty acid peroxidation: make some room HNE... , 2010, Free radical biology & medicine.

[100]  Yinghe Hu,et al.  Increased oxidative stress and astrogliosis responses in conditional double-knockout mice of Alzheimer-like presenilin-1 and presenilin-2. , 2008, Free radical biology & medicine.

[101]  U. Meierhenrich,et al.  Conception of the 'Chirality-Experiment' on ESA's mission ROSETTA to comet P46/Wirtanen. , 2001, Advances in space research : the official journal of the Committee on Space Research.

[102]  S. Lukyanov,et al.  Visualization of intracellular hydrogen peroxide with HyPer, a genetically encoded fluorescent probe. , 2013, Methods in enzymology.

[103]  P. Karplus,et al.  Peroxiredoxin Evolution and the Regulation of Hydrogen Peroxide Signaling , 2003, Science.

[104]  A. Olson,et al.  Proteome-wide covalent ligand discovery in native biological systems , 2016, Nature.

[105]  M. Hernáez,et al.  Differential carbonylation of cytoskeletal proteins in blood group O erythrocytes: potential role in protection against severe malaria. , 2012, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.