Computation of mutual fitness by competing bacteria

Competing populations in shared spaces with nonrenewable resources do not necessarily wage a battle for dominance at the cost of extinction of the less-fit strain if there are fitness advantages to the presence of the other strain. We report on the use of nanofabricated habitat landscapes to study the population dynamics of competing wild type and a growth advantage in stationary phase (GASP) mutant strains of Escherichia coli in a sealed and heterogeneous nutrient environment. Although GASP mutants are competitors with wild-type bacteria, we find that the 2 strains cooperate to maximize fitness (long-term total productivity) via spatial segregation: despite their very close genomic kinship, wild-type populations associate with wild-type populations and GASP populations with GASP populations. Thus, wild-type and GASP strains avoid each other locally, yet fitness is enhanced for both strains globally. This computation of fitness enhancement emerges from the local interaction among cells but maximizes global densities. At present we do not understand how fluctuations in both spatial and temporal dimensions lead to the emergent computation and how multilevel aggregates produce this collective adaptation.

[1]  Jane Bates,et al.  Small talk. , 2008, Nursing standard (Royal College of Nursing (Great Britain) : 1987).

[2]  John W. Crawford,et al.  Visualization, modelling and prediction in soil microbiology , 2007, Nature Reviews Microbiology.

[3]  David Peak,et al.  Stomatal patchiness and task-performing networks. , 2007, Annals of botany.

[4]  T. Karpinets,et al.  Bacterial stationary-state mutagenesis and Mammalian tumorigenesis as stress-induced cellular adaptations and the role of epigenetics. , 2006, Current genomics.

[5]  R. Austin,et al.  Bacterial metapopulations in nanofabricated landscapes , 2006, Proceedings of the National Academy of Sciences.

[6]  Matthew R Chapman,et al.  Curli biogenesis and function. , 2006, Annual review of microbiology.

[7]  A. Griffin,et al.  Social evolution theory for microorganisms , 2006, Nature Reviews Microbiology.

[8]  Masayuki Yamamura,et al.  A Design for Cellular Evolutionary Computation by using Bacteria , 2004, Natural Computing.

[9]  Jevin D. West,et al.  Evidence for complex, collective dynamics and emergent, distributed computation in plants , 2004, Proc. Natl. Acad. Sci. USA.

[10]  Manel Esteller,et al.  DNA methylation: a profile of methods and applications. , 2002, BioTechniques.

[11]  Bonnie L Bassler,et al.  Small Talk Cell-to-Cell Communication in Bacteria , 2002, Cell.

[12]  R. Hengge-aronis,et al.  Recent insights into the general stress response regulatory network in Escherichia coli. , 2002, Journal of molecular microbiology and biotechnology.

[13]  R. Kolter,et al.  Evolutionary cheating in Escherichia coli stationary phase cultures. , 2001, Genetics.

[14]  A. Ishihama Functional modulation of Escherichia coli RNA polymerase. , 2000, Annual review of microbiology.

[15]  R. Kolter,et al.  Mutations Enhancing Amino Acid Catabolism Confer a Growth Advantage in Stationary Phase , 1999, Journal of bacteriology.

[16]  R. Kolter,et al.  Evolution of microbial diversity during prolonged starvation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[17]  S. Leibler,et al.  Robustness in simple biochemical networks , 1997, Nature.

[18]  Levin,et al.  Allelopathy in Spatially Distributed Populations , 1997, Journal of theoretical biology.

[19]  Bill Gates,et al.  The Road Ahead (with CD-ROM) , 1996 .

[20]  M Mitchell,et al.  The evolution of emergent computation. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[21]  J. Downing,et al.  Biodiversity and stability in grasslands , 1996, Nature.

[22]  R. Durrett,et al.  The Importance of Being Discrete (and Spatial) , 1994 .

[23]  Akira Ishihama,et al.  Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[24]  D A Siegele,et al.  Microbial competition: Escherichia coli mutants that take over stationary phase cultures. , 1993, Science.

[25]  H. Berg,et al.  A physicist looks at bacterial chemotaxis. , 1988, Cold Spring Harbor symposia on quantitative biology.

[26]  G. Hardin,et al.  The Tragedy of the Commons , 1968, Green Planet Blues.