Microsatellite Instability as a Biomarker for PD-1 Blockade

Initial results by Le and colleagues, which were published in the June 25, 2015 issue of the New England Journal of Medicine, report significant responses of cancers with microsatellite instability (MSI) to anti–PD-1 inhibitors in patients who failed conventional therapy. This finding fits into a broader body of research associating somatic hypermutation and neoepitope formation with response to immunotherapy, with the added benefit of relying on a simple, widely used diagnostic test. This review surveys the pathogenesis and prognostic value of MSI, diagnostic guidelines for detecting it, and the frequency of MSI across tumors, with the goal of providing a reference for its use as a biomarker for PD-1 blockade. MSI usually arises from either germline mutations in components of the mismatch repair (MMR) machinery (MSH2, MSH6, MLH1, PMS2) in patients with Lynch syndrome or somatic hypermethylation of the MLH1 promoter. The result is a cancer with a 10- to 100-fold increase in mutations, associated in the colon with poor differentiation, an intense lymphocytic infiltrate, and a superior prognosis. Diagnostic approaches have evolved since the early 1990s, from relying exclusively on clinical criteria to incorporating pathologic features, PCR-based MSI testing, and immunohistochemistry for loss of MMR component expression. Tumor types can be grouped into categories based on the frequency of MSI, from colorectal (20%) and endometrial (22%–33%) to cervical (8%) and esophageal (7%) to skin and breast cancers (0%–2%). If initial results are validated, MSI testing could have an expanded role as a tool in the armamentarium of precision medicine. Clin Cancer Res; 22(4); 813–20. ©2016 AACR.

[1]  David T. W. Jones,et al.  Signatures of mutational processes in human cancer , 2013, Nature.

[2]  P. Gibbs,et al.  Multicenter retrospective analysis of metastatic colorectal cancer (CRC) with high-level microsatellite instability (MSI-H). , 2014, Annals of oncology : official journal of the European Society for Medical Oncology.

[3]  N. Gale,et al.  Low microsatellite instability and high loss of heterozygosity rates indicate dominant role of the suppressor pathway in squamous cell carcinoma of head and neck and loss of heterozygosity of 11q14.3 correlates with tumor grade. , 2003, Cancer genetics and cytogenetics.

[4]  J. Eshleman,et al.  Detection of microsatellite instability by fluorescence multiplex polymerase chain reaction. , 2000, The Journal of molecular diagnostics : JMD.

[5]  E. Kuipers,et al.  Somatic aberrations of mismatch repair genes as a cause of microsatellite‐unstable cancers , 2014, The Journal of pathology.

[6]  A. Cesinaro,et al.  Mismatch Repair Proteins Expression and Microsatellite Instability in Skin Lesions With Sebaceous Differentiation: A Study in Different Clinical Subgroups With and Without Extracutaneous Cancer , 2007, The American Journal of dermatopathology.

[7]  Peter J. Park,et al.  The Landscape of Microsatellite Instability in Colorectal and Endometrial Cancer Genomes , 2013, Cell.

[8]  W. Frankel,et al.  Screening for the Lynch syndrome (hereditary nonpolyposis colorectal cancer). , 2005, The New England journal of medicine.

[9]  R. Lothe,et al.  Sporadic gastric carcinomas with microsatellite instability display a particular clinicopathologic profile , 1995, International journal of cancer.

[10]  B. Leggett,et al.  Role of the serrated pathway in colorectal cancer pathogenesis. , 2010, Gastroenterology.

[11]  P. Møller,et al.  Combined analysis of three lynch syndrome cohorts confirms the modifying effects of 8q23.3 and 11q23.1 in MLH1 mutation carriers , 2013, International journal of cancer.

[12]  B. Vogelstein,et al.  Clinical and pathological characteristics of sporadic colorectal carcinomas with DNA replication errors in microsatellite sequences. , 1994, The American journal of pathology.

[13]  S. Thibodeau,et al.  Microsatellite instability in hereditary and sporadic breast cancers , 2003, International journal of cancer.

[14]  J. Carethers,et al.  Both hMutSα and hMutSß DNA Mismatch Repair Complexes Participate in 5-Fluorouracil Cytotoxicity , 2011, PloS one.

[15]  Richard D Kolodner,et al.  The mismatch repair complex hMutS alpha recognizes 5-fluorouracil-modified DNA: implications for chemosensitivity and resistance. , 2004, Gastroenterology.

[16]  Kathleen M Murphy,et al.  [Clinicopathological features and types of microsatellite instability in 1394 patients with colorectal cancer]. , 2020, Nan fang yi ke da xue xue bao = Journal of Southern Medical University.

[17]  K. Kinzler,et al.  Inactivation of the type II TGF-beta receptor in colon cancer cells with microsatellite instability. , 1995, Science.

[18]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of human colon and rectal cancer , 2012, Nature.

[19]  Daniel J Sargent,et al.  Tumor microsatellite-instability status as a predictor of benefit from fluorouracil-based adjuvant chemotherapy for colon cancer. , 2003, The New England journal of medicine.

[20]  Reiko Nishihara,et al.  Microsatellite instability and BRAF mutation testing in colorectal cancer prognostication. , 2013, Journal of the National Cancer Institute.

[21]  G. Watanabe,et al.  The profile of hMLH1 methylation and microsatellite instability in colorectal and non-small cell lung cancer. , 2005, International journal of molecular medicine.

[22]  U. Dirksen,et al.  Microsatellite instability in Ewing tumor is not associated with loss of mismatch repair protein expression , 2007, Journal of Cancer Research and Clinical Oncology.

[23]  W. Frankel,et al.  Screening for Lynch syndrome (hereditary nonpolyposis colorectal cancer) among endometrial cancer patients. , 2006, Cancer research.

[24]  R. Fleischmann,et al.  Mutation of a mutL homolog in hereditary colon cancer. , 1994, Science.

[25]  Lawrence J. Burgart,et al.  Development of a Fluorescent Multiplex Assay for Detection of MSI-High Tumors , 2004, Disease markers.

[26]  D. Sargent,et al.  Prognostic Significance of Defective Mismatch Repair and BRAF V600E in Patients with Colon Cancer , 2008, Clinical Cancer Research.

[27]  Z. Modrušan,et al.  Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing , 2014, Nature.

[28]  N. Wentzensen,et al.  Frequency of mismatch repair deficiency in ovarian cancer: a systematic review This article is a US Government work and, as such, is in the public domain of the United States of America. , 2011, International journal of cancer.

[29]  P. Propping,et al.  Frequency of microsatellite instability in unselected sebaceous gland neoplasias and hyperplasias. , 2003, The Journal of investigative dermatology.

[30]  S Srivastava,et al.  A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer. , 1998, Cancer research.

[31]  C. Behling,et al.  Use of 5-fluorouracil and survival in patients with microsatellite-unstable colorectal cancer. , 2004, Gastroenterology.

[32]  R. Labianca,et al.  DNA mismatch repair status and colon cancer recurrence and survival in clinical trials of 5-fluorouracil-based adjuvant therapy. , 2011, Journal of the National Cancer Institute.

[33]  Freddie C Hamdy,et al.  Differential expression of hMLH1 and hMSH2 is related to bladder cancer grade, stage and prognosis but not microsatellite instability , 2003, International journal of cancer.

[34]  N. Copeland,et al.  The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer , 1993, Cell.

[35]  S. Ogino,et al.  Relevance, pathogenesis, and testing algorithm for mismatch repair-defective colorectal carcinomas: a report of the association for molecular pathology. , 2012, The Journal of molecular diagnostics : JMD.

[36]  J. Herman,et al.  Incidence and functional consequences of hMLH1 promoter hypermethylation in colorectal carcinoma. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Matej Horvat,et al.  Microsatellite instability in colorectal cancer , 2011, Radiology and oncology.

[38]  R. Pai,et al.  Lynch Syndrome Screening Should Be Considered for All Patients With Newly Diagnosed Endometrial Cancer , 2014, The American journal of surgical pathology.

[39]  C. Boland,et al.  Strategies to Identify the Lynch Syndrome Among Patients With Colorectal Cancer , 2011, Annals of Internal Medicine.

[40]  M. Kloor,et al.  Absence of mismatch repair deficiency-related microsatellite instability in non-melanoma skin cancer. , 2012, The Journal of investigative dermatology.

[41]  L. Bégin,et al.  Microsatellite instability in benign and malignant thyroid neoplasms. , 2008, The Journal of surgical research.

[42]  P. Laird,et al.  Association between molecular subtypes of colorectal cancer and patient survival. , 2015, Gastroenterology.

[43]  J. Wolchok,et al.  Genetic basis for clinical response to CTLA-4 blockade in melanoma. , 2014, The New England journal of medicine.

[44]  E. Imyanitov,et al.  Microsatellite instability analysis of bilateral breast tumors suggests treatment-related origin of some contralateral malignancies , 2006, Journal of Cancer Research and Clinical Oncology.

[45]  J. Eshleman,et al.  Mismatch repair defects in human carcinogenesis. , 1996, Human molecular genetics.

[46]  Monica R McClain,et al.  EGAPP supplementary evidence review: DNA testing strategies aimed at reducing morbidity and mortality from Lynch syndrome , 2009, Genetics in Medicine.

[47]  J. Mecklin,et al.  The International Collaborative Group on Hereditary Non-Polyposis Colorectal Cancer (ICG-HNPCC) , 1991, Diseases of the colon and rectum.

[48]  Sudhir Srivastava,et al.  Revised Bethesda Guidelines for hereditary nonpolyposis colorectal cancer (Lynch syndrome) and microsatellite instability. , 2004, Journal of the National Cancer Institute.

[49]  C. Bokemeyer,et al.  Advances in Brief Microsatellite Instability of Germ Cell Tumors Is Associated with Resistance to Systemic Treatment 1 , 2002 .

[50]  E. Kuipers,et al.  Cancer risk in MLH1, MSH2 and MSH6 mutation carriers; different risk profiles may influence clinical management , 2009, Hereditary cancer in clinical practice.

[51]  C. Drake,et al.  Targeting the PD-1/B7-H1(PD-L1) pathway to activate anti-tumor immunity. , 2012, Current opinion in immunology.

[52]  A. Hartmann,et al.  Histopathologic Features and Microsatellite Instability of Cancers of the Papilla of Vater and Their Precursor Lesions , 2009, The American journal of surgical pathology.

[53]  David C. Smith,et al.  Safety, activity, and immune correlates of anti-PD-1 antibody in cancer. , 2012, The New England journal of medicine.

[54]  T. Ohmura,et al.  Infrequent widespread microsatellite instability in hepatocellular carcinomas. , 2000, International journal of oncology.

[55]  G. Botti,et al.  Assessment of genetic instability in melanocytic skin lesions through microsatellite analysis of benign naevi, dysplastic naevi, and primary melanomas and their metastases , 2003, Melanoma research.

[56]  P. Modrich DNA mismatch correction. , 1987, Annual review of biochemistry.

[57]  K. Kinzler,et al.  The vigorous immune microenvironment of microsatellite instable colon cancer is balanced by multiple counter-inhibitory checkpoints , 2015, Journal of Immunotherapy for Cancer.

[58]  Dmitry A. Gordenin,et al.  Hypermutation in human cancer genomes: footprints and mechanisms , 2014, Nature Reviews Cancer.

[59]  P. Goodfellow,et al.  Microsatellite instability and epigenetic inactivation of MLH1 and outcome of patients with endometrial carcinomas of the endometrioid type. , 2007, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[60]  M. Fujiwara,et al.  Genetic instability in lung cancer: concurrent analysis of chromosomal, mini- and microsatellite instability and loss of heterozygosity , 2006, British Journal of Cancer.

[61]  M. Kloor,et al.  Immune response against frameshift-induced neopeptides in HNPCC patients and healthy HNPCC mutation carriers. , 2008, Gastroenterology.

[62]  Z. Trajanoski,et al.  Effector memory T cells, early metastasis, and survival in colorectal cancer. , 2005, The New England journal of medicine.

[63]  R. Labianca,et al.  Defective mismatch repair as a predictive marker for lack of efficacy of fluorouracil-based adjuvant therapy in colon cancer. , 2010, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[64]  Bert Vogelstein,et al.  Hypermutability and mismatch repair deficiency in RER+ tumor cells , 1993, Cell.

[65]  E. Steyerberg,et al.  Phenotype Comparison of MLH1 and MSH2 Mutation Carriers in a Cohort of 1,914 Individuals Undergoing Clinical Genetic Testing in the United States , 2008, Cancer Epidemiology Biomarkers & Prevention.

[66]  D. Ward,et al.  Mutation in the DNA mismatch repair gene homologue hMLH 1 is associated with hereditary non-polyposis colon cancer , 1994, Nature.

[67]  Tsuyoshi Saito,et al.  Microsatellite instability and hMLH1 and hMSH2 expression analysis in soft tissue sarcomas. , 2005, Oncology reports.

[68]  H. Bismuth,et al.  Microsatellite instability mutator phenotype in hepatocellular carcinoma in non-alcoholic and non-virally infected normal livers. , 2003, Carcinogenesis.

[69]  Bert Vogelstein,et al.  PD-1 Blockade in Tumors with Mismatch-Repair Deficiency. , 2015, The New England journal of medicine.

[70]  Elizabeth M Webber,et al.  Systematic review of the predictive effect of MSI status in colorectal cancer patients undergoing 5FU-based chemotherapy , 2015, BMC Cancer.

[71]  B. Vogelstein,et al.  PD-1 blockade in tumors with mismatch repair deficiency. , 2015, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[72]  J. Stockman,et al.  Strategies to Identify the Lynch Syndrome Among Patients With Colorectal Cancer: A Cost-Effectiveness Analysis , 2013 .

[73]  C. Drake,et al.  Safety and activity of anti-PD-L1 antibody in patients with advanced cancer. , 2012, The New England journal of medicine.

[74]  S. Beghelli,et al.  Irrelevance of Microsatellite Instability in the Epidemiology of Sporadic Pancreatic Ductal Adenocarcinoma , 2012, PloS one.

[75]  A. Iafrate,et al.  Clinicopathologic and Molecular Profiles of Microsatellite Unstable Barrett Esophagus-associated Adenocarcinoma , 2011, The American journal of surgical pathology.

[76]  B. Vogelstein,et al.  Increased mutation rate at the hprt locus accompanies microsatellite instability in colon cancer. , 1995, Oncogene.

[77]  T. Schumacher,et al.  Mismatch Repair-Deficient Cancers Are Targets for Anti-PD-1 Therapy. , 2015, Cancer cell.

[78]  M. Meuth,et al.  Mutator phenotypes in human colorectal carcinoma cell lines. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[79]  P. Lazo,et al.  The molecular genetics of cervical carcinoma , 1999, British Journal of Cancer.

[80]  M. Loda,et al.  Methylation of the hMLH1 promoter correlates with lack of expression of hMLH1 in sporadic colon tumors and mismatch repair-defective human tumor cell lines. , 1997, Cancer research.

[81]  J. Barrett,et al.  Testing guidelines for hereditary non-polyposis colorectal cancer , 2004, Nature Reviews Cancer.

[82]  R. Houlston,et al.  Systematic review of microsatellite instability and colorectal cancer prognosis. , 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[83]  S. Schwartz,et al.  Chromosome number and structure both are markedly stable in RER colorectal cancers and are not destabilized by mutation of p53 , 1998, Oncogene.

[84]  H. Schackert,et al.  Low-level microsatellite instability phenotype in sporadic glioblastoma multiforme , 2005, Journal of Cancer Research and Clinical Oncology.

[85]  H. Iwata,et al.  Microsatellite instability in sporadic human breast cancers , 1996, International journal of cancer.

[86]  Laura H. Tang,et al.  Towards Identification of Hereditary DNA Mismatch Repair Deficiency: Sebaceous Neoplasm Warrants Routine Immunohistochemical Screening Regardless of Patient's Age or Other Clinical Characteristics , 2009, The American journal of surgical pathology.

[87]  E. Gabrielson,et al.  Microsatellite instability is uncommon in breast cancer. , 1999, Clinical cancer research : an official journal of the American Association for Cancer Research.

[88]  Suet Yi Leung,et al.  Heritable somatic methylation and inactivation of MSH2 in families with Lynch syndrome due to deletion of the 3′ exons of TACSTD1 , 2009, Nature Genetics.

[89]  Heather Hampel,et al.  The cost-effectiveness of genetic testing strategies for Lynch syndrome among newly diagnosed patients with colorectal cancer , 2010, Genetics in Medicine.

[90]  C. Boland,et al.  Genetics, natural history, tumor spectrum, and pathology of hereditary nonpolyposis colorectal cancer: an updated review. , 1993, Gastroenterology.

[91]  Martin L. Miller,et al.  Mutational landscape determines sensitivity to PD-1 blockade in non–small cell lung cancer , 2015, Science.

[92]  J. Potter,et al.  Identification of Lynch syndrome among patients with colorectal cancer. , 2012, JAMA.

[93]  P. Terrier,et al.  Prognostic significance of allelic imbalance at the c-kit gene locus and c-kit overexpression by immunohistochemistry in pediatric osteosarcomas. , 2005, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[94]  R. Sandler,et al.  Loss of activin receptor type 2 protein expression in microsatellite unstable colon cancers. , 2004, Gastroenterology.

[95]  K. Kinzler,et al.  hMSH2 mutations in hereditary nonpolyposis colorectal cancer kindreds. , 1994, Cancer research.

[96]  I. Frayling,et al.  A model-based assessment of the cost–utility of strategies to identify Lynch syndrome in early-onset colorectal cancer patients , 2015, BMC Cancer.

[97]  A. Hartmann,et al.  Elevated microsatellite alterations at selected tetranucleotides (EMAST) and mismatch repair gene expression in prostate cancer , 2006, Journal of Molecular Medicine.

[98]  Steven J. M. Jones,et al.  Comprehensive molecular characterization of gastric adenocarcinoma , 2014, Nature.

[99]  L. Kasturi,et al.  Biallelic inactivation of hMLH1 by epigenetic gene silencing, a novel mechanism causing human MSI cancers. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[100]  Z. Trajanoski,et al.  Type, Density, and Location of Immune Cells Within Human Colorectal Tumors Predict Clinical Outcome , 2006, Science.