Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro.
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R. Gourse | T. Gaal | M. M. Barker | C. A. Josaitis | T Gaal | R L Gourse | M M Barker | C A Josaitis | T. Gaál
[1] M. Ehrenberg,et al. Activities of constitutive promoters in Escherichia coli. , 1999, Journal of molecular biology.
[2] A. Travers. RNA polymerase specificity and the control of growth , 1976, Nature.
[3] V. Shingler,et al. The alarmone (p)ppGpp mediates physiological‐responsive control at the σ54‐dependent Po promoter , 1999, Molecular microbiology.
[4] L. Hsu. Quantitative parameters for promoter clearance. , 1996, Methods in Enzymology.
[5] R. D. Mueller,et al. Promoter domain mediates guanosine tetraphosphate activation of the histidine operon. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[6] A. Ishihama,et al. Promoter selectivity of Escherichia coli RNA polymerase. Differential stringent control of the multiple promoters from ribosomal RNA and protein operons. , 1984, The Journal of biological chemistry.
[7] R. Gourse,et al. Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[8] J. Gralla,et al. DNA melting within stable closed complexes at the Escherichia coli rrnB P1 promoter. , 1992, The Journal of biological chemistry.
[9] R. Gourse,et al. Factor independent activation of rrnB P1. An "extended" promoter with an upstream element that dramatically increases promoter strength. , 1994, Journal of molecular biology.
[10] R. Gourse,et al. Regulation of rRNA Transcription Is Remarkably Robust: FIS Compensates for Altered Nucleoside Triphosphate Sensing by Mutant RNA Polymerases at Escherichia coli rrn P1 Promoters , 2000, Journal of bacteriology.
[11] H. Bremer,et al. Toxic effects of high levels of ppGpp in Escherichia coli are relieved by rpoB mutations. , 1992, The Journal of biological chemistry.
[12] H. Xiao,et al. Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations. , 1991, The Journal of biological chemistry.
[13] C. Turnbough,et al. Characterization of transcriptional initiation from promoters P1 and P2 of the pyrBI operon of Escherichia coli K12. , 1990, The Journal of biological chemistry.
[14] M. Cashel,et al. Changes in conserved region 3 of Escherichia coli sigma 70 mediate ppGpp-dependent functions in vivo. , 1995, Journal of molecular biology.
[15] R. D'ari,et al. Metabolic Alarms and Cell Division inEscherichia coli , 1999, Journal of bacteriology.
[16] R. Gourse. Visualization and quantitative analysis of complex formation between E. coli RNA polymerase and an rRNA promoter in vitro. , 1988, Nucleic acids research.
[17] M. Chamberlin,et al. Escherichia coli transcript cleavage factors GreA and GreB stimulate promoter escape and gene expression in vivo and in vitro. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[18] D. Oxender,et al. The relA locus specifies a positive effector in branched-chain amino acid transport regulation , 1979, Journal of bacteriology.
[19] K. Jensen,et al. Effects of guanosine 3',5'-bisdiphosphate (ppGpp) on rate of transcription elongation in isoleucine-starved Escherichia coli. , 1994, The Journal of biological chemistry.
[20] R. Burgess,et al. A procedure for the rapid, large-scall purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. , 1975, Biochemistry.
[21] R. Gourse,et al. Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirements. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[22] R. Gourse,et al. Activation of Escherichia coli leuVTranscription by FIS , 1999, Journal of bacteriology.
[23] J. Patte,et al. Nucleotide sequence of the promoter region of the E. coli lysC gene. , 1983, Nucleic acids research.
[24] H. Bujard,et al. Stalling of Escherichia coli RNA polymerase in the +6 to +12 region in vivo is associated with tight binding to consensus promoter elements. , 1994, Journal of molecular biology.
[25] J. Gralla,et al. Interrelated effects of DNA supercoiling, ppGpp, and low salt on melting within the Escherichia coli ribosomal RNA rrnB P1 promoter , 1992, Molecular microbiology.
[26] R. Burgess,et al. Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter , 1984 .
[27] W. Langert,et al. Functional characteristics of the rrnD promoters of Escherichia coli. , 1991, The Journal of biological chemistry.
[28] A. Danchin,et al. A rapid test for the rel A mutation in E. coli. , 1976, Biochemical and biophysical research communications.
[29] A. V. Ooyen,et al. The mechanism of action of ppGpp on rRNA synthesis in vitro , 1976, Cell.
[30] M. Freundlich. Cyclic AMP can replace the relA-dependent requirement for derepression of acetohydroxy acid synthase in E. coli K-12 , 1977, Cell.
[31] Dmitry Pokholok,et al. Multiple Mechanisms Are Used for Growth Rate and Stringent Control of leuV Transcriptional Initiation inEscherichia coli , 1999, Journal of bacteriology.
[32] M. Chamberlin,et al. A direct effect of guanosine tetraphosphate on pausing of Escherichia coli RNA polymerase during RNA chain elongation. , 1981, The Journal of biological chemistry.
[33] R. G. Lloyd,et al. Modulation of RNA Polymerase by (p)ppGpp Reveals a RecG-Dependent Mechanism for Replication Fork Progression , 2000, Cell.
[34] C. Turnbough,et al. Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria. , 1997, Science.
[35] R. Gourse,et al. Activation of Escherichia coli rRNA Transcription by FIS during a Growth Cycle , 1998, Journal of bacteriology.
[36] A. Travers,et al. Conserved features of coordinately regulated E. coli promoters. , 1984, Nucleic acids research.
[37] M. Cashel,et al. Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp , 1993, Journal of bacteriology.
[38] H. Bremer,et al. Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphate , 1982, Journal of bacteriology.
[39] J. Gallant,et al. The mechanism of amino acid control of guanylate and adenylate biosynthesis. , 1971, The Journal of biological chemistry.
[40] Michael L. Johnson,et al. [16] Nonlinear least-squares analysis , 1985 .
[41] J. Hamming,et al. Interaction between RNA polymerase and a ribosomal RNA promoter of E. coli. , 1979, Nucleic acids research.
[42] I. Pastan,et al. Activation of transcription by guanosine 5'-diphosphate,3'-diphosphate, transfer ribonucleic acid, and novel protein from Escherichia coli. , 1975, The Journal of biological chemistry.
[43] A. Raghavan,et al. Guanosine tetraphosphate-induced dissociation of open complexes at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1: nanosecond depolarization spectroscopic studies. , 1998, Biophysical chemistry.
[44] R. Gourse,et al. E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. , 1990, The EMBO journal.
[45] R. Gourse,et al. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. , 1993, Science.
[46] S. Aiyar,et al. Escherichia coli Promoters with UP Elements of Different Strengths: Modular Structure of Bacterial Promoters , 1998, Journal of bacteriology.
[47] K. Jensen,et al. Effects of the Antiterminator BoxA on Transcription Elongation Kinetics and ppGpp Inhibition of Transcription Elongation in Escherichia coli(*) , 1995, The Journal of Biological Chemistry.
[48] S. Artz,et al. Mutations that render the promoter of the histidine operon of Salmonella typhimurium insensitive to nutrient-rich medium repression and amino acid downshift , 1997, Journal of bacteriology.
[49] M. Chamberlin,et al. Pausing and attenuation of in vitro transcription in the rrnB operon of E. coli , 1981, Cell.
[50] M. Cashel. Preparation of guanosine tetraphosphate (ppGpp) and guanosine pentaphosphate (pppGpp) from Escherichia coli ribosomes. , 1974, Analytical biochemistry.
[51] H. Bujard,et al. Context-dependent effects of upstream A-tracts. Stimulation or inhibition of Escherichia coli promoter function. , 1994, Journal of molecular biology.
[52] D. Morse,et al. Dual-control of the tryptophan operon is mediated by both tryptophanyl-tRNA synthetase and the repressor. , 1976, Journal of molecular biology.
[53] C. Bruni,et al. In vivo and in vitro detection of the leader RNA of the histidine operon of Escherichia coli K-12. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[54] M. Cashel,et al. The stringent response , 1996 .
[55] N. Glansdorff,et al. Homologous control sites and DNA transcription starts in the related argF and argI genes of Escherichia coli K12. , 1982, The EMBO journal.
[56] G. Schreiber,et al. Overexpression of the relA gene in Escherichia coli. , 1991, The Journal of biological chemistry.
[57] P. Primakoff,et al. Positive control of lac operon expression in vitro by guanosine 5'-diphosphate 3'-diphosphate. , 1979, Proceedings of the National Academy of Sciences of the United States of America.
[58] D. Jin,et al. The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[59] M. Williams,et al. Expression of arg genes of Escherichia coli during arginine limitation dependent upon stringent control of translation , 1987, Journal of bacteriology.
[60] R. Wagner,et al. Guanosine 3',5'-bis(diphosphate) (ppGpp)-dependent inhibition of transcription from stringently controlled Escherichia coli promoters can be explained by an altered initiation pathway that traps RNA polymerase. , 1997, European journal of biochemistry.
[61] L. Alfoeldi,et al. NEUTRALIZATION OF THE AMINO ACID SENSITIVITY OF RCREL ESCHERICHIA COLI. , 1964, Biochimica et biophysica acta.
[62] J. Calvo,et al. Effects of nutrition and growth rate on Lrp levels in Escherichia coli , 1996, Journal of bacteriology.
[63] W. McClure,et al. Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps. , 1985, Biochemistry.
[64] B. E. Davidson,et al. Nucleotide sequence and transcription of the phenylalanine and tyrosine operons of Escherichia coli K12. , 1984, Journal of molecular biology.
[65] F. Rojo,et al. Transcription activation or repression by phage psi 29 protein p4 depends on the strength of the RNA polymerase-promoter interactions. , 1997, Molecular cell.
[66] R. Gourse,et al. Two modes of transcription initiation in vitro at the rrnB P1 promoter of Escherichia coli. , 1993, The Journal of biological chemistry.
[67] J. Gardner. Initiation, pausing, and termination of transcription in the threonine operon regulatory region of Escherichia coli. , 1982, The Journal of biological chemistry.
[68] P. Blum,et al. Correlation between histidine operon expression and guanosine 5'-diphosphate-3'-diphosphate levels during amino acid downshift in stringent and relaxed strains of Salmonella typhimurium , 1989, Journal of bacteriology.
[69] R. Gourse,et al. Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli , 1994, Journal of bacteriology.
[70] R. Gourse,et al. Mechanism of regulation of transcription initiation by ppGpp. II. Models for positive control based on properties of RNAP mutants and competition for RNAP. , 2001, Journal of molecular biology.
[71] W. McClure,et al. Rate-limiting steps in RNA chain initiation. , 1980, Proceedings of the National Academy of Sciences of the United States of America.
[72] R. Gourse,et al. Factor-independent activation of Escherichia coli rRNA transcription. I. Kinetic analysis of the roles of the upstream activator region and supercoiling on transcription of the rrnB P1 promoter in vitro. , 1991, Journal of molecular biology.
[73] M. Record,et al. Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA. , 1991, Methods in enzymology.
[74] R. Ebright,et al. Transcription activation by catabolite activator protein (CAP). , 1999, Journal of molecular biology.
[75] Roe Jh,et al. Regulation of the kinetics of the interaction of Escherichia coli RNA polymerase with the lambda PR promoter by salt concentration. , 1985 .
[76] N. Fujita,et al. The mediator for stringent control, ppGpp, binds to the β‐subunit of Escherichia coli RNA polymerase , 1998, Genes to cells : devoted to molecular & cellular mechanisms.
[77] R. Gourse,et al. RNA polymerase mutants that destabilize RNA polymerase-promoter complexes alter NTP-sensing by rrn P1 promoters. , 1998, Journal of molecular biology.
[78] H. Choy. The Study of Guanosine 5′-Diphosphate 3′-Diphosphate-mediated Transcription Regulation in Vitro Using a Coupled Transcription-Translation System* , 2000, The Journal of Biological Chemistry.
[79] M. Leng,et al. The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control , 1998, The EMBO journal.
[80] B. Ames,et al. Guanosine 5'-diphosphate 3'-diphosphate (ppGpp): positive effector for histidine operon transcription and general signal for amino-acid deficiency. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[81] M. Adams,et al. Nucleotide sequence and genetic characterization reveal six essential genes for the LIV-I and LS transport systems of Escherichia coli. , 1990, The Journal of biological chemistry.
[82] J. Gallant,et al. The control of ribonucleic acid synthesis in Escherichia coli. 3. The functional relationship between purine ribonucleoside triphosphate pool sizes and the rate of ribonucleic acid accumulation. , 1969, The Journal of biological chemistry.
[83] C. Somerville,et al. rel-dependent methionine requirement in revertants of a methionyl-transfer RNA synthetase mutant of Escherichia coli. , 1977, Journal of molecular biology.
[84] A. Raghavan,et al. The differential effects of guanosine tetraphosphate on open complex formation at the Escherichia coli ribosomal protein promoters rplJ and rpsA P1. , 1998, Biophysical chemistry.
[85] M. Cashel,et al. The control of ribonucleic acid synthesis in Escherichia coli. V. Characterization of a nucleotide associated with the stringent response. , 1969, The Journal of biological chemistry.
[86] L. Møller,et al. Invariance of the Nucleoside Triphosphate Pools ofEscherichia coli with Growth Rate* , 2000, The Journal of Biological Chemistry.
[87] R. Gourse,et al. rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli. , 1996, Annual review of microbiology.
[88] M. Record,et al. General method of analysis of kinetic equations for multistep reversible mechanisms in the single-exponential regime: application to kinetics of open complex formation between Esigma70 RNA polymerase and lambdaP(R) promoter DNA. , 1999, Biophysical journal.
[89] J. Hamming,et al. E coli RNA polymerase-rRNA promoter interaction and the effect of ppGpp. , 1980, Nucleic acids research.