Genetic analysis of circadian clocks.

The goals of this review are twofold. The opening section introduces the tools and concepts of the genetic approach to understanding circadian rhythms. The following sections review the pertinent literature with an emphasis on those studies and approaches that appear most likely to lead to new answers to old questions concerning the mechanism(s) of circadian rhythmicity. This survey has been made somewhat simpler due the series of excellent reviews on clocks that have appeared over the past five years (35, 36, 38, 39, 42,63,64,65,66,67,68,84,96, 107, 1 18,153, 183, 184, 189). The length of this list reflects, in part, both a maturing of the genetics and molecular genetics of circadian clocks as a field, and an increasing interest and appreciation of the strengths of genetics in offering a different set of tools and a different way of thinking about the problems that circadian biologists have been considering for several decades.

[1]  L. Hartwell,et al.  Genetic control of the cell division cycle in yeast. II. Genes controlling DNA replication and its initiation. , 1971, Journal of molecular biology.

[2]  O. Hankinson,et al.  Cloning of a factor required for activity of the Ah (dioxin) receptor. , 1991, Science.

[3]  G. Kraepelin,et al.  A. T. Winfree, The Geometry of Biological Time (Biomathematics, Vol.8). 530 S., 290 Abb. Berlin‐Heidelberg‐New‐York 1980. Springer‐Verlag. DM 59,50 , 1981 .

[4]  M. Johnston A model fungal gene regulatory mechanism: the GAL genes of Saccharomyces cerevisiae. , 1987, Microbiological reviews.

[5]  R. Konopka Neurogenetics of Drosophila Circadian Rhythms , 1986 .

[6]  J. C. Hall,et al.  Interspecific comparison of the period gene of Drosophila reveals large blocks of non‐conserved coding DNA. , 1988, The EMBO journal.

[7]  J. F. Feldman,et al.  Isolation of circadian clock mutants of Neurospora crassa. , 1973, Genetics.

[8]  J. Dunlap,et al.  On the role of protein synthesis in the circadian clock of Neurospora crassa. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[9]  A. Murray A cycle is a cycle is a cycle , 1987, Nature.

[10]  D. Mergenhagen Circadian clock: genetic characterization of a short period mutant of Chlamydomonas reinhardii. , 1984, European journal of cell biology.

[11]  Jeffrey C. Hall,et al.  Feedback of the Drosophila period gene product on circadian cycling of its messenger RNA levels , 1990, Nature.

[12]  Jeffrey C. Hall,et al.  Genes and biological rhythms , 1987 .

[13]  Harold B. Dowse,et al.  The search for hidden periodicities in biological time series revisited , 1989 .

[14]  M. W. Young,et al.  Molecular genetics of a biological clock in Drosophila. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[15]  Peter H. Smith Naturally occurring arrhythmicity in eclosion and activity in Lucilia cuprina: its genetic basis , 1987 .

[16]  E. Dees,et al.  The product of the H19 gene may function as an RNA , 1990, Molecular and cellular biology.

[17]  R. Konopka,et al.  Characterization of Andante, a new Drosophila clock mutant, and its interactions with other clock mutants. , 1991, Journal of neurogenetics.

[18]  A. James,et al.  Embryonic expression of the period clock gene in the central nervous system of Drosophila melanogaster. , 1986, The EMBO journal.

[19]  J. C. Hall,et al.  Requirement for period gene expression in the adult and not during development for locomotor activity rhythms of imaginal Drosophila melanogaster. , 1990, Journal of neurogenetics.

[20]  Park Ec,et al.  Mutations with dominant effects on the behavior and morphology of the nematode Caenorhabditis elegans. , 1986 .

[21]  V. Bruce Mutants of the biological clock in Chlamydomonas reinhardi. , 1972, Genetics.

[22]  M. Case,et al.  Gene organization and regulation in the qa (quinic acid) gene cluster of Neurospora crassa. , 1985, Microbiological reviews.

[23]  W. Briggs,et al.  Circadian nature of a rhythm expressed by an invertaseless strain of Neurospora crassa. , 1966, Plant physiology.

[24]  J. C. Hall,et al.  Mutations and molecules influencing biological rhythms. , 1988, Annual review of neuroscience.

[25]  J. C. Hall,et al.  Mapping the clock rhythm mutation to the period locus of Drosophila melanogaster by germline transformation. , 1992, Journal of neurogenetics.

[26]  N. Ishida,et al.  Diurnal regulation of per repeat mRNA in the suprachiasmatic nucleus in rat brain , 1991, Neuroscience Letters.

[27]  M. W. Young,et al.  In situ localization of the per clock protein during development of Drosophila melanogaster , 1988, Molecular and cellular biology.

[28]  J. W. Hastings,et al.  ON THE MECHANISM OF TEMPERATURE INDEPENDENCE IN A BIOLOGICAL CLOCK. , 1957, Proceedings of the National Academy of Sciences of the United States of America.

[29]  F. Davis,et al.  Transplanted suprachiasmatic nucleus determines circadian period. , 1990, Science.

[30]  S. Brody,et al.  Circadian rhythms in Neurospora crassa: effects of unsaturated fatty acids , 1979, Journal of bacteriology.

[31]  M. Menaker,et al.  A mutation of the circadian system in golden hamsters. , 1988, Science.

[32]  A. Winfree The geometry of biological time , 1991 .

[33]  C. R. McClung,et al.  The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period , 1989, Nature.

[34]  Konopka Rj Genetic dissection of the Drosophila circadian system. , 1979 .

[35]  J. Jacklet,et al.  Neuronal and cellular oscillators , 1989 .

[36]  S. Benzer,et al.  The period gene encodes a predominantly nuclear protein in adult Drosophila , 1992, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[37]  J. C. Hall,et al.  Molecular mapping of point mutations in the period gene that stop or speed up biological clocks in Drosophila melanogaster. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[38]  A. Ewing Cycles in the courtship song of male Drosophila melanogaster have not been detected , 1988, Animal Behaviour.

[39]  J. F. Feldman,et al.  Complementation analysis of linked circadian clock mutants of Neurospora crassa. , 1976, Genetics.

[40]  M. Rosbash,et al.  The period clock locus of D. melanogaster codes for a proteoglycan , 1986, Cell.

[41]  C. Kyriacou,et al.  Clock mutations alter developmental timing in Drosophila , 1990, Heredity.

[42]  J. Travis Scoring a technical knockout in mice. , 1992, Science.

[43]  J. F. Feldman,et al.  Genetic and physiological characteristics of a slow-growing circadian clock mutant of Neurospora crassa. , 1978, Genetics.

[44]  S. Kay,et al.  Circadian Control of cab Gene Transcription and mRNA Accumulation in Arabidopsis. , 1991, The Plant cell.

[45]  Jeffrey C. Hall,et al.  A family of unusually spliced biologically active transcripts encoded by a Drosophila clock gene , 1987, Nature.

[46]  J. Loros,et al.  A recessive circadian clock mutation at the frq locus of Neurospora crassa. , 1986, Genetics.

[47]  S. Brody,et al.  Circadian rhythms in Drosophila melanogaster: analysis of period as a function of gene dosage at the per (period) locus. , 1986, Journal of theoretical biology.

[48]  J. C. Hall Genetics of circadian rhythms. , 1990, Annual review of genetics.

[49]  J. C. Hall,et al.  The disconnected Visual System Mutations in Drosophila melanogaster Drastically Disrupt Circadian Rhythms , 1989, Journal of biological rhythms.

[50]  M. Young Molecular genetics of biological rhythms , 1993 .

[51]  Jeffrey C. Hall,et al.  An antibody to the Drosophila period protein recognizes circadian pacemaker neurons in Aplysia and Bulla , 1989, Neuron.

[52]  Jackson Fr The Isolation of Biological Rhythm Mutations on the Autosomes of Drosophila melanogaster , 1983 .

[53]  M. Klingenberg Mechanism and evolution of the uncoupling protein of brown adipose tissue. , 1990, Trends in biochemical sciences.

[54]  J. Takahashi Circadian rhythms: From gene expression to behavior , 1991, Current Opinion in Neurobiology.

[55]  Stephen T. Crews,et al.  The Drosophila single-minded gene encodes a nuclear protein with sequence similarity to the per gene product , 1988, Cell.

[56]  J. F. Feldman,et al.  The frq locus in Neurospora crassa: a key element in circadian clock organization. , 1980, Genetics.

[57]  J. C. Hall,et al.  Spatial and temporal expression of the period gene in Drosophila melanogaster. , 1988, Genes & development.

[58]  J. C. Hall,et al.  Molecular transfer of a species-specific behavior from Drosophila simulans to Drosophila melanogaster. , 1991, Science.

[59]  J. Giebultowicz,et al.  Circadian System Controlling Release of Sperm in the Insect Testes , 1989, Science.

[60]  M. Sargent,et al.  Circadian Rhythms in Neurospora , 1973 .

[61]  H. Schweiger,et al.  Circadian rhythms in unicellular organisms: an endeavor to explain the molecular mechanism. , 1977, International review of cytology.

[62]  Sweeney Bm A physiological model for circadian rhythms derived from the acetabularia rhythm paradoxes. , 1974 .

[63]  Jeffrey C. Hall,et al.  Molecular analysis of the period locus in Drosophila melanogaster and identification of a transcript involved in biological rhythms , 1984, Cell.

[64]  N. Hoffman,et al.  A light‐entrained circadian clock controls transcription of several plant genes. , 1988, The EMBO journal.

[65]  J. Dunlap,et al.  Neurospora crassa: A Unique System for Studying Circadian Rhythms , 1983 .

[66]  J. W. Hastings,et al.  Membrane model for the circadian clock , 1974, Nature.

[67]  D. Mattern Unsaturated fatty acid isomers: effects on the circadian rhythm of a fatty-acid-deficient Neurospora crassa mutant. , 1985, Archives of biochemistry and biophysics.

[68]  J. C. Hall,et al.  Genetics and molecular biology of rhythms , 1987, BioEssays : news and reviews in molecular, cellular and developmental biology.

[69]  L. Hartwell,et al.  Genetic control of the cell division cycle in yeast. , 1974, Science.

[70]  W. Timberlake,et al.  A large cluster of highly expressed genes is dispensable for growth and development in Aspergillus nidulans. , 1989, Genetics.

[71]  M. Rechsteiner,et al.  Regulation of enzyme levels by proteolysis: the role of pest regions. , 1988, Advances in enzyme regulation.

[72]  Jeffrey C. Hall,et al.  Drosophila courtship song cycles in normal andperiod mutant males revisited , 1990, Behavior genetics.

[73]  R. Drucker-Colín,et al.  Fetal suprachiasmatic nucleus transplants: diurnal rhythm recovery of lesioned rats , 1984, Brain Research.

[74]  L. Donehower,et al.  Mice deficient for p53 are developmentally normal but susceptible to spontaneous tumours , 1992, Nature.

[75]  R. Konopka,et al.  Drosophila clock mutations affect the morphology of a brain neurosecretory cell group. , 1980, Journal of neurobiology.

[76]  J. Dunlap Closely watched clocks: molecular analysis of circadian rhythms in Neurospora and Drosophila. , 1990, Trends in genetics : TIG.

[77]  J. Loros,et al.  Loss of Temperature Compensation of Circadian Period Length in the frq-9 Mutant of Neurospora crassa , 1986, Journal of biological rhythms.

[78]  J. C. Hall,et al.  A new mutation at the period locus of Drosophila melanogaster with some novel effects on circadian rhythms. , 1989, Journal of neurogenetics.