DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis
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Thomas J. Hardcastle | I. Henderson | B. Santos | Xiaohui Zhao | Nataliya E. Yelina | Christophe Lambing
[1] L. Chelysheva,et al. AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms , 2015, PLoS genetics.
[2] Gunnar Rätsch,et al. DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation , 2015, eLife.
[3] Jelle Van Leene,et al. Multiple mechanisms limit meiotic crossovers: TOP3α and two BLM homologs antagonize crossovers in parallel to FANCM , 2015, Proceedings of the National Academy of Sciences.
[4] Jianbing Yan,et al. Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize , 2015, Nature Communications.
[5] Peter J. Bradbury,et al. Recombination in diverse maize is stable, predictable, and associated with genetic load , 2015, Proceedings of the National Academy of Sciences.
[6] Damian Roqueiro,et al. Genome-wide analysis of local chromatin packing in Arabidopsis thaliana , 2015, Genome research.
[7] D. Weigel,et al. Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping , 2015, G3: Genes, Genomes, Genetics.
[8] Matteo Pellegrini,et al. Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis. , 2014, Molecular cell.
[9] Marc W. Schmid,et al. Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. , 2014, Molecular cell.
[10] S. Keeney,et al. Temporospatial Coordination of Meiotic DNA Replication and Recombination via DDK Recruitment to Replisomes , 2014, Cell.
[11] Hadi Quesneville,et al. Structural and functional partitioning of bread wheat chromosome 3B , 2014, Science.
[12] R. Mercier,et al. FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers , 2014, Nucleic acids research.
[13] N. Kleckner,et al. Crossover Patterning by the Beam-Film Model: Analysis and Implications , 2014, PLoS genetics.
[14] D. Patel,et al. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis , 2013, Nature Structural & Molecular Biology.
[15] S. Wessler,et al. Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing , 2013, Proceedings of the National Academy of Sciences.
[16] D. Weigel,et al. The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana , 2013, eLife.
[17] I. Henderson,et al. Contrasted Patterns of Crossover and Non-crossover at Arabidopsis thaliana Meiotic Recombination Hotspots , 2013, PLoS genetics.
[18] Krystyna A. Kelly,et al. High-throughput analysis of meiotic crossover frequency and interference via flow cytometry of fluorescent pollen in Arabidopsis thaliana , 2013, Nature Protocols.
[19] O. Martin,et al. Intraspecific variation of recombination rate in maize , 2013, Genome Biology.
[20] O. Martin,et al. Intraspecific variation of recombination rate in maize , 2013, Genome Biology.
[21] I. Hellmann,et al. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden , 2013, Nature Genetics.
[22] D. Coleman-Derr,et al. The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin , 2013, Cell.
[23] S. Jacobsen,et al. Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome , 2013, Cell.
[24] E. Dennis. Faculty Opinions recommendation of Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana. , 2012 .
[25] Mihaela M. Martis,et al. A physical, genetic and functional sequence assembly of the barley genome , 2012, Nature.
[26] Luke E. Berchowitz,et al. Deep Genome-Wide Measurement of Meiotic Gene Conversion Using Tetrad Analysis in Arabidopsis thaliana , 2012, PLoS genetics.
[27] R. Jansen,et al. Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation , 2012, Proceedings of the National Academy of Sciences.
[28] Krystyna A. Kelly,et al. Epigenetic Remodeling of Meiotic Crossover Frequency in Arabidopsis thaliana DNA Methyltransferase Mutants , 2012, PLoS genetics.
[29] M. Novatchkova,et al. The Arabidopsis HEI10 Is a New ZMM Protein Related to Zip3 , 2012, PLoS genetics.
[30] G. Copenhaver,et al. FANCM Limits Meiotic Crossovers , 2012, Science.
[31] Christopher J. Hale,et al. MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing , 2012, Science.
[32] Daniel W. A. Buchan,et al. The tomato genome sequence provides insights into fleshy fruit evolution , 2012, Nature.
[33] J. Higgins,et al. The Fanconi Anemia Ortholog FANCM Ensures Ordered Homologous Recombination in Both Somatic and Meiotic Cells in Arabidopsis[W] , 2012, Plant Cell.
[34] A. Levy,et al. Deficiency in DNA methylation increases meiotic crossover rates in euchromatic but not in heterochromatic regions in Arabidopsis , 2012, Proceedings of the National Academy of Sciences.
[35] E. Bucher,et al. Loss of DNA methylation affects the recombination landscape in Arabidopsis , 2012, Proceedings of the National Academy of Sciences.
[36] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[37] K. Mechtler,et al. Inter-Homolog Crossing-Over and Synapsis in Arabidopsis Meiosis Are Dependent on the Chromosome Axis Protein AtASY3 , 2012, PLoS genetics.
[38] N. Warthmann,et al. The recombination landscape in Arabidopsis thaliana F2 populations , 2011, Heredity.
[39] O. Martin,et al. Genome-Wide Crossover Distribution in Arabidopsis thaliana Meiosis Reveals Sex-Specific Patterns along Chromosomes , 2011, PLoS genetics.
[40] Karsten M. Borgwardt,et al. Whole-genome sequencing of multiple Arabidopsis thaliana populations , 2011, Nature Genetics.
[41] K. Shirahige,et al. Spo11-Accessory Proteins Link Double-Strand Break Sites to the Chromosome Axis in Early Meiotic Recombination , 2011, Cell.
[42] Felix Krueger,et al. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications , 2011, Bioinform..
[43] C. Saintenac,et al. Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot , 2011, Chromosoma.
[44] M. Pellegrini,et al. Relationship between nucleosome positioning and DNA methylation , 2010, Nature.
[45] L. Chelysheva,et al. An Easy Protocol for Studying Chromatin and Recombination Protein Dynamics during Arabidopsisthaliana Meiosis: Immunodetection of Cohesins, Histones and MLH1 , 2010, Cytogenetic and Genome Research.
[46] Matthew W. Vaughn,et al. Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State , 2010, PLoS genetics.
[47] D. Zilberman,et al. Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation , 2010, Science.
[48] G. Thon,et al. RNAi and heterochromatin repress centromeric meiotic recombination , 2010, Proceedings of the National Academy of Sciences.
[49] M. Pellegrini,et al. Conservation and divergence of methylation patterning in plants and animals , 2010, Proceedings of the National Academy of Sciences.
[50] N. Kleckner,et al. Recombination Proteins Mediate Meiotic Spatial Chromosome Organization and Pairing , 2010, Cell.
[51] David G Mets,et al. RTEL-1 Enforces Meiotic Crossover Interference and Homeostasis , 2010, Science.
[52] Julie A. Law,et al. Establishing, maintaining and modifying DNA methylation patterns in plants and animals , 2010, Nature Reviews Genetics.
[53] I. Henderson,et al. Accurate sodium bisulfite sequencing in plants , 2010, Epigenetics.
[54] Sanzhen Liu,et al. Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome , 2009, PLoS genetics.
[55] T. Graves,et al. The Physical and Genetic Framework of the Maize B73 Genome , 2009, PLoS genetics.
[56] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[57] J. Poulain,et al. A Role for RNAi in the Selective Correction of DNA Methylation Defects , 2009, Science.
[58] M. Novatchkova,et al. SHOC1, an XPF Endonuclease-Related Protein, Is Essential for the Formation of Class I Meiotic Crossovers , 2008, Current Biology.
[59] Robert A. Martienssen,et al. Kismeth: Analyzer of plant methylation states through bisulfite sequencing , 2008, BMC Bioinformatics.
[60] M. Pellegrini,et al. Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana , 2008, PloS one.
[61] J. Higgins,et al. AtMSH5 partners AtMSH4 in the class I meiotic crossover pathway in Arabidopsis thaliana, but is not required for synapsis. , 2008, The Plant journal : for cell and molecular biology.
[62] I. Henderson,et al. Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading. , 2008, Genes & development.
[63] R. Lister,et al. Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis , 2008, Cell.
[64] S. Nelson,et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning , 2008, Nature.
[65] J. Higgins,et al. Expression and functional analysis of AtMUS81 in Arabidopsis meiosis reveals a role in the second pathway of crossing-over. , 2008, The Plant journal : for cell and molecular biology.
[66] O. Mathieu,et al. Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation , 2007, Cell.
[67] E. Sanchez-Moran,et al. ASY1 mediates AtDMC1-dependent interhomolog recombination during meiosis in Arabidopsis. , 2007, Genes & development.
[68] Luke E. Berchowitz,et al. The Role of AtMUS81 in Interference-Insensitive Crossovers in A. thaliana , 2007, PLoS genetics.
[69] M. Doutriaux,et al. Zip4/Spo22 Is Required for Class I CO Formation but Not for Synapsis Completion in Arabidopsis thaliana , 2007, PLoS genetics.
[70] E. Barillot,et al. Genome-Wide Redistribution of Meiotic Double-Strand Breaks in Saccharomyces cerevisiae , 2006, Molecular and Cellular Biology.
[71] T. Kuromori,et al. Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination. , 2006, The Plant journal : for cell and molecular biology.
[72] M. Pellegrini,et al. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis , 2006, Cell.
[73] M. J. Neale,et al. Initiation of meiotic recombination by formation of DNA double-strand breaks: mechanism and regulation. , 2006, Biochemical Society transactions.
[74] N. Kleckner. Chiasma formation: chromatin/axis interplay and the role(s) of the synaptonemal complex , 2006, Chromosoma.
[75] A. Stuitje,et al. A new seed-based assay for meiotic recombination in Arabidopsis thaliana. , 2005, The Plant journal : for cell and molecular biology.
[76] Hong Ma,et al. The Arabidopsis ROCK-N-ROLLERS gene encodes a homolog of the yeast ATP-dependent DNA helicase MER3 and is required for normal meiotic crossover formation. , 2005, The Plant journal : for cell and molecular biology.
[77] M. Doutriaux,et al. Two Meiotic Crossover Classes Cohabit in Arabidopsis One Is Dependent on MER3,whereas the Other One Is Not , 2005, Current Biology.
[78] J. Higgins,et al. The Arabidopsis MutS homolog AtMSH4 functions at an early step in recombination: evidence for two classes of recombination in Arabidopsis. , 2004, Genes & development.
[79] S. Keeney,et al. Where the crossovers are: recombination distributions in mammals , 2004, Nature Reviews Genetics.
[80] Marjori Matzke,et al. Role of the DRM and CMT3 Methyltransferases in RNA-Directed DNA Methylation , 2003, Current Biology.
[81] J. Paszkowski,et al. Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis , 2003, Nature Genetics.
[82] A. Probst,et al. Two means of transcriptional reactivation within heterochromatin. , 2003, The Plant journal : for cell and molecular biology.
[83] S. Jacobsen,et al. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis , 2002, The EMBO journal.
[84] Ingo Schubert,et al. Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[85] F. Franklin,et al. Asy1, a protein required for meiotic chromosome synapsis, localizes to axis-associated chromatin in Arabidopsis and Brassica , 2002, Journal of Cell Science.
[86] Xiaofeng Cao,et al. Interplay between Two Epigenetic Marks DNA Methylation and Histone H3 Lysine 9 Methylation , 2002, Current Biology.
[87] S. Jacobsen,et al. Role of the Arabidopsis DRM Methyltransferases in De Novo DNA Methylation and Gene Silencing , 2002, Current Biology.
[88] G. Copenhaver,et al. Crossover interference in Arabidopsis. , 2002, Genetics.
[89] H. Fu,et al. Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[90] H. Fu,et al. The highly recombinogenic bz locus lies in an unusually gene-rich region of the maize genome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[91] T. Kakutani,et al. Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis , 2001, Nature.
[92] M. Grelon,et al. AtSPO11‐1 is necessary for efficient meiotic recombination in plants , 2001, The EMBO journal.
[93] M. Lichten,et al. Direct coupling between meiotic DNA replication and recombination initiation. , 2000, Science.
[94] M. Matzke,et al. Transcriptional silencing and promoter methylation triggered by double‐stranded RNA , 2000, The EMBO journal.
[95] M. Marra,et al. Genetic definition and sequence analysis of Arabidopsis centromeres. , 1999, Science.
[96] H. L. Sänger,et al. Heavy de novo methylation at symmetrical and non-symmetrical sites is a hallmark of RNA-directed DNA methylation. , 1999, Nucleic acids research.
[97] J. Rossignol,et al. Suppression of crossing-over by DNA methylation in Ascobolus. , 1998, Genes & development.
[98] G. Copenhaver,et al. Assaying genome-wide recombination and centromere functions with Arabidopsis tetrads. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[99] N. Kleckner,et al. Identification of double holliday junctions as intermediates in meiotic recombination , 1995, Cell.
[100] H. L. Sänger,et al. RNA-directed de novo methylation of genomic sequences in plants , 1994, Cell.
[101] R. Martienssen,et al. Arabidopsis thaliana DNA methylation mutants. , 1993, Science.
[102] V. Sundaresan,et al. A recombination hotspot in the maize A1 intragenic region , 1991, Theoretical and Applied Genetics.
[103] D. G. Watts,et al. Nonlinear Regression Analysis and Its Applications , 1988 .
[104] Jack W. Szostak,et al. The double-strand-break repair model for recombination , 1983, Cell.
[105] Chinese Academy of Sciences , 2014, Nature.
[106] B. de Massy. Initiation of meiotic recombination: how and where? Conservation and specificities among eukaryotes. , 2013, Annual review of genetics.
[107] A. Auton,et al. Estimating recombination rates from genetic variation in humans. , 2012, Methods in molecular biology.
[108] J. Drouaud,et al. Characterization of meiotic crossovers in pollen from Arabidopsis thaliana. , 2011, Methods in molecular biology.
[109] Luke E. Berchowitz,et al. Fluorescent Arabidopsis tetrads: a visual assay for quickly developing large crossover and crossover interference data sets , 2007, Nature Protocols.
[110] A. Villeneuve,et al. Whence Meiosis? , 2001, Cell.
[111] A. Goldman,et al. Meiotic recombination hotspots. , 1995, Annual review of genetics.
[112] Thomas J. Hardcastle,et al. Nature Genetics Advance Online Publication Arabidopsis Meiotic Crossover Hot Spots Overlap with H2a.z Nucleosomes at Gene Promoters , 2022 .