Measles virus and rinderpest virus divergence dated to the sixth century BCE
暂无分享,去创建一个
M. Suchard | P. Lemey | A. Mankertz | S. Santibanez | F. Leendertz | S. Calvignac‐Spencer | B. Vrancken | N. Widulin | L. Patrono | S. Lequime | K. Merkel | J. Gogarten | A. Düx | Ş. Boral | A. Hilbig | David Horst | Baptiste Prepoint | Jasmin Schlotterbeck | M. Ulrich | K. Harper | T. Schnalke
[1] Yumei Leng,et al. Measles virus infection diminishes preexisting antibodies that offer protection from other pathogens , 2019, Science.
[2] Sebastián Duchêne,et al. Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations , 2019, bioRxiv.
[3] M. Koffi,et al. Experimental infection of cattle with wild type peste-des-petits-ruminants virus - Their role in its maintenance and spread. , 2019, Research in veterinary science.
[4] Daniel L. Ayres,et al. BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics , 2019, Systematic biology.
[5] M. Suchard,et al. Bayesian Inference of Evolutionary Histories under Time-Dependent Substitution Rates , 2019, Molecular biology and evolution.
[6] Oliver Smith,et al. Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival , 2019, bioRxiv.
[7] P. Orozco‐terWengel,et al. Domestication of cattle: Two or three events? , 2018, Evolutionary applications.
[8] J. Alexander,et al. Progress Toward Regional Measles Elimination — Worldwide, 2000–2017 , 2018, MMWR. Morbidity and mortality weekly report.
[9] A. Margaryan,et al. Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans , 2018, Proceedings of the National Academy of Sciences.
[10] J. Krause,et al. Neolithic and medieval virus genomes reveal complex evolution of hepatitis B , 2018, bioRxiv.
[11] S. Rasmussen,et al. Ancient hepatitis B viruses from the Bronze Age to the Medieval period , 2018, Nature.
[12] M. Suchard,et al. Posterior summarisation in Bayesian phylogenetics using Tracer , 2022 .
[13] Daniel L. Ayres,et al. Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 , 2018, Virus evolution.
[14] E. Holmes,et al. The paradox of HBV evolution as revealed from a 16th century mummy , 2018, PLoS pathogens.
[15] C. Lindqvist,et al. Technical Advances and Challenges in Genome-Scale Analysis of Ancient DNA , 2018 .
[16] K. Dellagi,et al. Insight into the global evolution of Rodentia associated Morbilli-related paramyxoviruses , 2017, Scientific Reports.
[17] P. Pevzner,et al. metaSPAdes: a new versatile metagenomic assembler. , 2017, Genome research.
[18] E. Holmes,et al. 17th Century Variola Virus Reveals the Recent History of Smallpox , 2016, Current Biology.
[19] A. Katzourakis,et al. Time-Dependent Rate Phenomenon in Viruses , 2016, Journal of Virology.
[20] Andrew Rambaut,et al. Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) , 2016, Virus evolution.
[21] S. Ho,et al. Time‐dependent estimates of molecular evolutionary rates: evidence and causes , 2015, Molecular ecology.
[22] C. Chase-Dunn,et al. Urban Scale Shifts since the Bronze Age: Upsweeps, Collapses, and Semiperipheral Development , 2015, Social Science History.
[23] A. Ryo,et al. Molecular evolution of haemagglutinin (H) gene in measles virus , 2015, Scientific Reports.
[24] T. Newfield. Human–Bovine Plagues in the Early Middle Ages , 2015, Journal of Interdisciplinary History.
[25] B. Murrell,et al. RDP4: Detection and analysis of recombination patterns in virus genomes , 2015, Virus evolution.
[26] Monika Henzinger,et al. Split diversity in constrained conservation prioritization using integer linear programming , 2014, Methods in ecology and evolution.
[27] A. von Haeseler,et al. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.
[28] C. Batten,et al. Molecular Evolution of Peste des Petits Ruminants Virus , 2014, Emerging infectious diseases.
[29] S. Morand,et al. Domesticated animals and human infectious diseases of zoonotic origins: domestication time matters. , 2014, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[30] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[31] Guy Baele,et al. The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates , 2014, PLoS Comput. Biol..
[32] S. Cleaveland,et al. Peste des Petits Ruminants Infection among Cattle and Wildlife in Northern Tanzania , 2013, Emerging infectious diseases.
[33] R. Kock,et al. Rinderpest: the veterinary perspective on eradication , 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.
[34] Philip L. F. Johnson,et al. mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters , 2013, Bioinform..
[35] I. Morris. The Measure of Civilization: How Social Development Decides the Fate of Nations , 2013 .
[36] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[37] P. Balaresque,et al. Variola virus in a 300-year-old Siberian mummy. , 2012, The New England journal of medicine.
[38] M. Knörnschild,et al. Bats host major mammalian paramyxoviruses , 2012, Nature Communications.
[39] Sergei L. Kosakovsky Pond,et al. Purifying Selection Can Obscure the Ancient Age of Viral Lineages , 2011, Molecular biology and evolution.
[40] Kazuo Yoshida,et al. Characterization of the complete genomic sequence of the rinderpest virus Fusan strain cattle type, which is the most classical isolate in Asia and comparison with its lapinized strain , 2011, Virus Genes.
[41] Jonathan Dushoff,et al. Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis , 2011, Journal of The Royal Society Interface.
[42] Gary F. McCracken,et al. Host Phylogeny Constrains Cross-Species Emergence and Establishment of Rabies Virus in Bats , 2010, Science.
[43] H. Oshitani,et al. Origin of measles virus: divergence from rinderpest virus between the 11th and 12th centuries , 2010, Virology Journal.
[44] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[45] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[46] Michael Worobey,et al. The Isolation of Nucleic Acids from Fixed, Paraffin-Embedded Tissues–Which Methods Are Useful When? , 2007, PloS one.
[47] Nathan D. Wolfe,et al. Origins of major human infectious diseases , 2007, Nature.
[48] J. Blancou. Old prophylactic methods , 2006 .
[49] J. Heesterbeek,et al. A model of lineage-1 and lineage-2 rinderpest virus transmission in pastoral areas of East Africa. , 2005, Preventive veterinary medicine.
[50] B. Cunha. Smallpox and measles: historical aspects and clinical differentiation. , 2004, Infectious disease clinics of North America.
[51] Yong Wang,et al. An index of substitution saturation and its application. , 2003, Molecular phylogenetics and evolution.
[52] C. Spinage,et al. Cattle Plague , 2003, Springer US.
[53] O. Pybus,et al. Increased positive selection pressure in persistent (SSPE) versus acute measles virus infections. , 2002, The Journal of general virology.
[54] H. Field,et al. Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. , 2000, The Journal of general virology.
[55] Z. Yang,et al. Estimation of primate speciation dates using local molecular clocks. , 2000, Molecular biology and evolution.
[56] E. Schreier,et al. Genotyping of measles virus isolates from Central Europe and Russia , 1999, Journal of medical virology.
[57] T. Barrett,et al. Rinderpest: the disease and its impact on humans and animals. , 1999, Advances in virus research.
[58] T. Barrett,et al. Rescue of rinderpest virus from cloned cDNA , 1997, Journal of virology.
[59] B. T. Grenfell,et al. Disease Extinction and Community Size: Modeling the Persistence of Measles , 1997, Science.
[60] G. Kearns,et al. Measles: an historical geography of a major human viral disease from global expansion to local retreat, 1840–1990 , 1995, Medical History.
[61] N. Goldman,et al. A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.
[62] Peter Haggett,et al. Measles: an historical geography of a major human viral disease, from global expansion to local retreat, 1840-1990. , 1993 .
[63] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[64] Carl W. Condit,et al. Cities and Economic Development: From the Dawn of History to the Present by Paul Bairoch (review) , 1990, Technology and Culture.
[65] W. Mcneill. Plagues and Peoples , 1977, The Review of Politics.
[66] F. Black,et al. Measles endemicity in insular populations: critical community size and its evolutionary implication. , 1966, Journal of theoretical biology.
[67] A. Langmuir. Medical importance of measles. , 1962, American journal of diseases of children.
[68] M. Bartlett. Measles Periodicity and Community Size , 1957 .