Sample preparation for micro total analytical systems (μ-TASs)

Abstract The integration of sample treatment into a micro total analytical system (μ-TAS) represents one of the remaining hurdles towards achieving truly miniaturized systems. The challenge is made more complex by the enormous variation in samples to be analyzed. Moreover, the pretreatment technique has to be compatible with the analytical device to which it is coupled, in terms of time, reagent and power consumption, and sample volume. This review, with more than 140 references, presents some recent advances and novel strategies for sample preparation in μ-TASs. We classify μ-TAS sample-preparation methods according to the mechanism that links the analyte(s) of interest to substrates: filtration, cell lysis, liquid-liquid extraction, solid-phase extraction, droplet membrane droplet, treatment by nanomaterials, stacking and isotachophoresis. We compare these techniques in terms of sample flexibility, arguing for these applications in some fields, such as biological and environmental. These discussions can help to determine the appropriate sample-preparation technique for generating a true μ-TAS. We provide a critical discussion and some key conclusions.

[1]  Peng Liu,et al.  Integrated sample cleanup and capillary array electrophoresis microchip for forensic short tandem repeat analysis. , 2011, Forensic science international. Genetics.

[2]  R. Bodor,et al.  Isotachophoresis and isotachophoresis-zone electrophoresis of food additives on a chip with column-coupling separation channels , 2001 .

[3]  Tae Seok Seo,et al.  Integrated capture, concentration, polymerase chain reaction, and capillary electrophoretic analysis of pathogens on a chip. , 2009, Analytical chemistry.

[4]  Yooli K Light,et al.  Rapid, continuous purification of proteins in a microfluidic device using genetically-engineered partition tags. , 2008, Lab on a chip.

[5]  R. Mathies,et al.  Design and operation of a portable scanner for high performance microchip capillary array electrophoresis. , 2010, The Review of scientific instruments.

[6]  Pierre Thibault,et al.  Rapid and sensitive separation of trace level protein digests using microfabricated devices coupled to a quadrupole ‐ time‐of‐flight mass spectrometer , 2000, Electrophoresis.

[7]  K. Okamoto,et al.  Screening of C60 crystallization using a microfluidic system. , 2006, Langmuir : the ACS journal of surfaces and colloids.

[8]  Zhao-Lun Fang,et al.  A microfluidic chip based liquid-liquid extraction system with microporous membrane. , 2006, Analytica chimica acta.

[9]  T. V. van Beek,et al.  Site-specific immobilization of DNA in glass microchannels via photolithography. , 2009, Langmuir : the ACS journal of surfaces and colloids.

[10]  Wei-Hua Huang,et al.  Polymer monolith‐integrated multilayer poly(dimethylsiloxane) microchip for online microextraction and capillary electrophoresis , 2010, Electrophoresis.

[11]  Á. Ríos,et al.  Miniaturization of Analytical Systems , 2009 .

[12]  Wei Wang,et al.  Flow-through functionalized PDMS microfluidic channels with dextran derivative for ELISAs. , 2009, Lab on a chip.

[13]  Richard A Mathies,et al.  Multichannel PCR-CE microdevice for genetic analysis. , 2006, Analytical chemistry.

[14]  Ashok Mulchandani,et al.  Microchip capillary electrophoresis with electrochemical detection of thiol-containing degradation products of V-type nerve agents. , 2004, Analytical chemistry.

[15]  J. Landers,et al.  Development of a micro-total analysis system (μ-TAS) for the determination of catecholamines , 2010, Analytical and bioanalytical chemistry.

[16]  J. Kutter,et al.  Electrophoretic partitioning of proteins in two-phase microflows. , 2007, Lab on a chip.

[17]  Jungkyu Kim,et al.  Microfluidic sample preparation: cell lysis and nucleic acid purification. , 2009, Integrative biology : quantitative biosciences from nano to macro.

[18]  Qin Lu,et al.  Sensitive capillary electrophoresis microchip determination of trinitroaromatic explosives in nonaqueous electrolyte following solid phase extraction , 2002 .

[19]  J. Carlsson,et al.  Lab-on-a-chip technology for determination of protein isoform profiles. , 2006, Journal of chromatography. A.

[20]  M. Hennion,et al.  Integrated microdevice for preconcentration and separation of a wide variety of compounds by electrochromatography , 2009, Electrophoresis.

[21]  P Belgrader,et al.  Lysing bacterial spores by sonication through a flexible interface in a microfluidic system. , 2001, Analytical chemistry.

[22]  R S Foote,et al.  Microchip device for cell lysis, multiplex PCR amplification, and electrophoretic sizing. , 1998, Analytical chemistry.

[23]  Noritada Kaji,et al.  Exceeding 20 000‐fold concentration of protein by the on‐line isotachophoresis concentration in poly(methyl methacrylate) microchip , 2009, Electrophoresis.

[24]  Peng Liu,et al.  Integrated DNA purification, PCR, sample cleanup, and capillary electrophoresis microchip for forensic human identification. , 2011, Lab on a chip.

[25]  Tatsuo Maruyama,et al.  Liquid membrane operations in a microfluidic device for selective separation of metal ions. , 2004, Analytical chemistry.

[26]  Peng Liu,et al.  Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing. , 2007, Analytical chemistry.

[27]  Numrin Thaitrong,et al.  Polymerase chain reaction-capillary electrophoresis genetic analysis microdevice with in-line affinity capture sample injection. , 2009, Analytical chemistry.

[28]  G McHale,et al.  Evaluation of a microfluidic device for the electrochemical determination of halide content in ionic liquids. , 2009, Analytical chemistry.

[29]  Bo Huang,et al.  Counting Low-Copy Number Proteins in a Single Cell , 2007, Science.

[30]  Marc Madou,et al.  A novel, compact disk-like centrifugal microfluidics system for cell lysis and sample homogenization. , 2007, Colloids and surfaces. B, Biointerfaces.

[31]  Yong-Ak Song,et al.  Continuous-flow pI-based sorting of proteins and peptides in a microfluidic chip using diffusion potential. , 2006, Analytical chemistry.

[32]  M. Masár,et al.  Isotachophoresis separations of enantiomers on a planar chip with coupled separation channels , 2001, Electrophoresis.

[33]  Zhao-Lun Fang,et al.  Microfluidic chip-based liquid-liquid extraction and preconcentration using a subnanoliter-droplet trapping technique. , 2005, Lab on a chip.

[34]  Yi Xiao,et al.  Detection of proteins in serum by micromagnetic aptamer PCR (MAP) technology. , 2010, Angewandte Chemie.

[35]  Takehiko Kitamori,et al.  Single-molecule DNA patterning and detection by padlock probing and rolling circle amplification in microchannels for analysis of small sample volumes. , 2011, Analytical chemistry.

[36]  N. Allbritton,et al.  Micro total analysis systems for cell biology and biochemical assays. , 2012, Analytical chemistry.

[37]  F. Everaerts,et al.  High-performance zone electrophoresis , 1979 .

[38]  M. Pumera,et al.  Lab-on-a-chip for ultrasensitive detection of carbofuran by enzymatic inhibition with replacement of enzyme using magnetic beads. , 2009, Lab on a chip.

[39]  Tza-Huei Wang,et al.  An all-in-one microfluidic device for parallel DNA extraction and gene analysis , 2010, Biomedical microdevices.

[40]  Nicole Pamme,et al.  Mobile magnetic particles as solid-supports for rapid surface-based bioanalysis in continuous flow. , 2009, Lab on a chip.

[41]  G. Stemme,et al.  New fluid filter structure in silicon fabricated using a self‐aligning technique , 1988 .

[42]  A Disposable Polydimethylsiloxane Microdevice for DNA Amplification , 2010 .

[43]  A Manz,et al.  Developments in technology and applications of microsystems. , 1997, Current opinion in chemical biology.

[44]  Arben Merkoçi,et al.  Magnetic and electrokinetic manipulations on a microchip device for bead‐based immunosensing applications , 2011, Electrophoresis.

[45]  Y. Jun,et al.  Removal of urea from urea-rich protein samples using metal ions in a microfluidic device , 2007 .

[46]  Deyong He,et al.  Chemiluminescence microflow injection analysis system on a chip for the determination of nitrite in food , 2007 .

[47]  Hiroyuki Noji,et al.  Sequential processing from cell lysis to protein assay on a chip enabling the optimization of an F(1)-ATPase single molecule assay condition. , 2009, Lab on a chip.

[48]  A Manz,et al.  Narrow sample channel injectors for capillary electrophoresis on microchips. , 2001, Analytical chemistry.

[49]  Chih-Ming Ho,et al.  Micromachined Particle Filter With Low Power Dissipation , 2001 .

[50]  Chia-Fu Chou,et al.  Electrodeless dielectrophoresis of single- and double-stranded DNA. , 2002, Biophysical journal.

[51]  Michael Pepper,et al.  Selective dielectrophoretic manipulation of surface-immobilized DNA molecules , 2003 .

[52]  H. Morgan,et al.  Ac electrokinetics: a review of forces in microelectrode structures , 1998 .

[53]  P. Gascoyne,et al.  Dielectrophoretic field-flow fractionation system for detection of aquatic toxicants. , 2008, Analytical chemistry.

[54]  Daniel C Leslie,et al.  Nucleic acid extraction techniques and application to the microchip. , 2009, Lab on a chip.

[55]  Andreas Manz,et al.  Latest developments in micro total analysis systems. , 2010, Analytical chemistry.

[56]  Bingcheng Lin,et al.  Simply and reliably integrating micro heaters/sensors in a monolithic PCR‐CE microfluidic genetic analysis system , 2009, Electrophoresis.

[57]  F. Regnier,et al.  Microfabricated filters for microfluidic analytical systems. , 1999, Analytical chemistry.

[58]  John Parnell,et al.  Determination of the asphaltene and carboxylic acid content of a heavy oil using a microfluidic device. , 2009, Lab on a chip.

[59]  Yi Lu,et al.  Immobilization of DNAzyme catalytic beacons on PMMA for Pb2+ detection. , 2008, Lab on a chip.

[60]  S. Jacobson,et al.  Microchip electrophoresis with sample stacking , 1995, Electrophoresis.

[61]  Takehiko Kitamori,et al.  Countercurrent laminar microflow for highly efficient solvent extraction. , 2007, Angewandte Chemie.

[62]  Somenath Mitra,et al.  Microfluidic supported liquid membrane extraction , 2005 .

[63]  Noe Salazar,et al.  A portable cell-based impedance sensor for toxicity testing of drinking water. , 2009, Lab on a chip.

[64]  Eun Kyu Lee,et al.  Quantitative Analysis of Methyl Parathion Pesticides in a Polydimethylsiloxane Microfluidic Channel Using Confocal Surface-Enhanced Raman Spectroscopy , 2006, Applied spectroscopy.

[65]  Rajiv Bharadwaj,et al.  On-chip millionfold sample stacking using transient isotachophoresis. , 2006, Analytical chemistry.

[66]  Quan Cheng,et al.  Regenerable tethered bilayer lipid membrane arrays for multiplexed label-free analysis of lipid-protein interactions on poly(dimethylsiloxane) microchips using SPR imaging. , 2009, Analytical chemistry.

[67]  Gang Chen,et al.  Fiber‐packed channel bioreactor for microfluidic protein digestion , 2007, Proteomics.

[68]  Wilfred Chen,et al.  Microchip enzymatic assay of organophosphate nerve agents , 2004 .

[69]  Richard A Mathies,et al.  Integrated sample cleanup-capillary electrophoresis microchip for high-performance short tandem repeat genetic analysis. , 2009, Analytical chemistry.

[70]  A. Manz,et al.  Miniaturized total chemical analysis systems: A novel concept for chemical sensing , 1990 .

[71]  Jerome P Ferrance,et al.  Chitosan-coated silica as a solid phase for RNA purification in a microfluidic device. , 2009, Analytical chemistry.

[72]  David J. Mooney,et al.  Label-free biomarker detection from whole blood , 2009, 2010 10th IEEE International Conference on Solid-State and Integrated Circuit Technology.

[73]  Jitae Kim,et al.  Cell lysis on a microfluidic CD (compact disc). , 2004, Lab on a chip.

[74]  Ruey-Jen Yang,et al.  A nanochannel‐based concentrator utilizing the concentration polarization effect , 2008, Electrophoresis.

[75]  Jan Lichtenberg,et al.  Sample pretreatment on microfabricated devices. , 2002, Talanta.

[76]  S. Sugiyama,et al.  Individual evaluation of DEP, EP and AC-EOF effects on λDNA molecules in a DNA concentrator , 2010 .

[77]  M. Miller,et al.  Apparent contribution of respiratory gas exchange to the in vitro "cell density effect" in ultrasonic cell lysis. , 1992, Ultrasound in medicine & biology.

[78]  Peter R. Fielden,et al.  Determination of chlorine containing species in explosive residues using chip-based isotachophoresis. , 2008, Journal of chromatography. A.

[79]  Göran Stemme,et al.  A sub-micron particle filter in silicon , 1990 .

[80]  R. Bodor,et al.  Isotachophoresis and isotachophoresis--zone electrophoresis separations of inorganic anions present in water samples on a planar chip with column-coupling separation channels and conductivity detection. , 2001, Journal of chromatography. A.

[81]  Qifeng Xue,et al.  Sample pre-concentration by isotachophoresis in microfluidic devices. , 2002, Journal of chromatography. A.

[82]  S. Jacobson,et al.  Integrated system for rapid PCR-based DNA analysis in microfluidic devices. , 2000, Analytical chemistry.

[83]  P Belgrader,et al.  A minisonicator to rapidly disrupt bacterial spores for DNA analysis. , 1999, Analytical chemistry.

[84]  Henrik Jensen,et al.  Implementation of droplet-membrane-droplet liquid-phase microextraction under stagnant conditions for lab-on-a-chip applications. , 2010, Analytica chimica acta.

[85]  P. Yager,et al.  Microfluidic Diffusion-Based Separation and Detection , 1999, Science.

[86]  Zhao-Lun Fang,et al.  A microfluidic chip based sequential injection system with trapped droplet liquid-liquid extraction and chemiluminescence detection. , 2006, Lab on a chip.

[87]  M. R. Bown,et al.  AC electroosmotic flow in a DNA concentrator , 2006 .

[88]  S. Jacobson,et al.  Determination of metal cations in microchip electrophoresis using on‐chip complexation and sample stacking , 1998 .

[89]  Yong-Sang Kim,et al.  Development of PCR Microchip for Early Cancer Risk Prediction , 2011, IEEE Sensors Journal.

[90]  K. Tachibana,et al.  Enhancement of ultrasound-induced apoptosis and cell lysis by echo-contrast agents. , 2003, Ultrasound in medicine & biology.

[91]  Michael P. Hughes,et al.  AC electrokinetics: applications for nanotechnology , 2000 .

[92]  Peter Enoksson,et al.  Micromachined flow-through filter-chamber for chemical reactions on beads , 2000 .

[93]  Jerome P Ferrance,et al.  An integrated microfluidic device for DNA purification and PCR amplification of STR fragments. , 2010, Forensic science international. Genetics.

[94]  F. Tseng,et al.  Nanostructured pillars based on vertically aligned carbon nanotubes as the stationary phase in micro‐CEC , 2009, Electrophoresis.

[95]  Roland Zengerle,et al.  Continuous microfluidic DNA extraction using phase-transfer magnetophoresis. , 2010, Lab on a chip.

[96]  R. Bodor,et al.  Determination of bromate in drinking water by zone electrophoresis‐isotachophoresis on a column‐coupling chip with conductivity detection , 2002, Electrophoresis.

[97]  Noritada Kaji,et al.  Online preconcentration by transient isotachophoresis in linear polymer on a poly(methyl methacrylate) microchip for separation of human serum albumin immunoassay mixtures. , 2007, Analytical chemistry.

[98]  Hailing Jin,et al.  Stand-alone rolling circle amplification combined with capillary electrophoresis for specific detection of small RNA. , 2009, Analytical chemistry.

[99]  Chih-Ming Ho,et al.  Electrokinetic bioprocessor for concentrating cells and molecules. , 2004, Analytical chemistry.

[100]  Yoon-Kyoung Cho,et al.  One-Step Pathogen Specific DNA Extraction from Whole Blood on a Centrifugal Microfluidic Device , 2007, TRANSDUCERS 2007 - 2007 International Solid-State Sensors, Actuators and Microsystems Conference.

[101]  Takehiko Kitamori,et al.  Pressure balance at the liquid-liquid interface of micro countercurrent flows in microchips. , 2007, Analytical chemistry.

[102]  D. J. Harrison,et al.  Interfacial design and chemical sensing , 1994 .

[103]  Á. Ríos,et al.  Miniaturization through lab-on-a-chip: utopia or reality for routine laboratories? A review. , 2012, Analytica chimica acta.

[104]  Takashi Korenaga,et al.  Development and optimization of a lab-on-a-chip device for the measurement of trace nitrogen dioxide gas in the atmosphere. , 2006, The Analyst.

[105]  Takehiko Kitamori,et al.  Chemicofunctional membrane for integrated chemical processes on a microchip. , 2003, Analytical chemistry.

[106]  So-Hee Park,et al.  Electrophoretic analysis of food dyes using a miniaturized microfluidic system , 2008, Electrophoresis.

[107]  J P Landers,et al.  Towards dynamic coating of glass microchip chambers for amplifying DNA via the polymerase chain reaction , 2001, Electrophoresis.

[108]  Gwo-Bin Lee,et al.  Magnetic-bead-based microfluidic system for ribonucleic acid extraction and reverse transcription processes , 2009, Biomedical microdevices.

[109]  R. Chien,et al.  Sample stacking in laboratory-on-a-chip devices. , 2001, Journal of chromatography. A.

[110]  N. Dossi,et al.  Application of microchip electrophoresis with electrochemical detection to environmental aldehyde monitoring , 2009, Electrophoresis.

[111]  C. Ogino,et al.  Enhancement of sonocatalytic cell lysis of Escherichia coli in the presence of TiO2 , 2006 .

[112]  Adam T Woolley,et al.  Affinity monolith-integrated poly(methyl methacrylate) microchips for on-line protein extraction and capillary electrophoresis. , 2008, Analytical chemistry.

[113]  K. Jensen,et al.  Integrated continuous microfluidic liquid-liquid extraction. , 2007, Lab on a chip.

[114]  J. Landers,et al.  Electrokinetic injection for stacking neutral analytes in capillary and microchip electrophoresis. , 2001, Analytical chemistry.

[115]  Paul Yager,et al.  Cell lysis and protein extraction in a microfluidic device with detection by a fluorogenic enzyme assay. , 2002, Analytical chemistry.

[116]  Michael J. Sepaniak,et al.  Multiplexed Microfluidic Surface-Enhanced Raman Spectroscopy , 2007, Applied spectroscopy.

[117]  V. Remcho,et al.  In‐line extraction employing functionalized magnetic particles for capillary and microchip electrophoresis , 2010, Electrophoresis.

[118]  V. Studer,et al.  Microfluidic droplet-based liquid-liquid extraction. , 2008, Analytical chemistry.

[119]  S. Mohr,et al.  Rapid chloride analysis using miniaturised isotachophoresis. , 2006, Journal of chromatography. A.

[120]  David B Jackson,et al.  Serum-based microRNAs: Are we blinded by potential? , 2009, Proceedings of the National Academy of Sciences.

[121]  Paul C. H. Li,et al.  Transport, manipulation, and reaction of biological cells on-chip using electrokinetic effects. , 1997, Analytical chemistry.

[122]  Doyoung Byun,et al.  A disposable, self-contained PCR chip. , 2009, Lab on a chip.

[123]  Igor L Medintz,et al.  Microfabricated two-dimensional electrophoresis device for differential protein expression profiling. , 2007, Analytical chemistry.

[124]  Takehiko Kitamori,et al.  Serial DNA immobilization in micro- and extended nanospace channels. , 2009, Lab on a chip.

[125]  H Andersson,et al.  Micromachined filter‐chamber array with passive valves for biochemical assays on beads , 2001, Electrophoresis.

[126]  Dietrich Kohlheyer,et al.  Microfluidic high-resolution free-flow isoelectric focusing. , 2007, Analytical chemistry.

[127]  D. J. Harrison,et al.  Confinement effects on the morphology of photopatterned porous polymer monoliths for capillary and microchip electrophoresis of proteins , 2008, Electrophoresis.

[128]  M. Gilges Determination of impurities in an acidic drug substance by micellar electrokinetic chromatography , 1997 .

[129]  Sungyoung Choi,et al.  Optically coated mirror-embedded microchannel to measure hydrophoretic particle ordering in three dimensions. , 2009, Small.

[130]  Thomas Laurell,et al.  Acoustic differential extraction for forensic analysis of sexual assault evidence. , 2009, Analytical chemistry.

[131]  Nigel Beard,et al.  Dealing with real samples: sample pre-treatment in microfluidic systems. , 2003, Lab on a chip.

[132]  Jikun Liu,et al.  Surface modification of polymer microfluidic devices using in‐channel atom transfer radical polymerization , 2008, Electrophoresis.