Universality in protein residue networks.
暂无分享,去创建一个
[1] Anna Lubiw. A note on odd/even cycles , 1988, Discret. Appl. Math..
[2] Privalov Pl,et al. Thermodynamic Problems of Protein Structure , 1989 .
[3] P. Privalov. Thermodynamic problems of protein structure. , 1989, Annual review of biophysics and biophysical chemistry.
[4] Joel Friedman,et al. On the second eigenvalue and random walks in randomd-regular graphs , 1991, Comb..
[5] Jeremy P. Spinrad. Finding Large Holes , 1991, Inf. Process. Lett..
[6] Liping Sun. Two classes of perfect graphs , 1991, J. Comb. Theory, Ser. B.
[7] Laks V. S. Lakshmanan,et al. Efficient Parallel Algorithms for Finding Chordless Cycles in Graphs , 1993, Parallel Process. Lett..
[8] H. Edelsbrunner,et al. Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.
[9] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[10] R. Casadio,et al. A neural network based predictor of residue contacts in proteins. , 1999, Protein engineering.
[11] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[12] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[13] G J Barton,et al. Protein structural domains: Analysis of the 3Dee domains database , 2001, Proteins.
[14] S. Strogatz. Exploring complex networks , 2001, Nature.
[15] Gordon F. Royle,et al. Algebraic Graph Theory , 2001, Graduate texts in mathematics.
[16] Roman A. Laskowski,et al. PDBsum: summaries and analyses of PDB structures , 2001, Nucleic Acids Res..
[17] S. Shen-Orr,et al. Networks Network Motifs : Simple Building Blocks of Complex , 2002 .
[18] M Karplus,et al. Small-world view of the amino acids that play a key role in protein folding. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[19] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[20] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[21] M. Newman,et al. Mixing patterns in networks. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.
[22] Christos Gkantsidis,et al. Conductance and congestion in power law graphs , 2003, SIGMETRICS '03.
[23] Victoria A. Higman,et al. Uncovering network systems within protein structures. , 2003, Journal of molecular biology.
[24] Mark E. J. Newman,et al. The Structure and Function of Complex Networks , 2003, SIAM Rev..
[25] A. Atilgan,et al. Small-world communication of residues and significance for protein dynamics. , 2003, Biophysical journal.
[26] Ernesto Estrada,et al. A Protein Folding Degree Measure and Its Dependence on Crystal Packing, Protein Size, Secondary Structure, and Domain Structural Class , 2004, J. Chem. Inf. Model..
[27] René Ranzinger,et al. AISMIG—an interactive server-side molecule image generator , 2005, Nucleic Acids Res..
[28] S. Havlin,et al. Self-similarity of complex networks , 2005, Nature.
[29] Ganesh Bagler,et al. Network properties of protein structures , 2004, q-bio/0408009.
[30] J. A. Rodríguez-Velázquez,et al. Subgraph centrality in complex networks. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[31] S. Vishveshwara,et al. A network representation of protein structures: implications for protein stability. , 2005, Biophysical journal.
[32] N. Linial,et al. Expander Graphs and their Applications , 2006 .
[33] Alan M. Frieze,et al. Random graphs , 2006, SODA '06.
[34] Ernesto Estrada,et al. Spectral scaling and good expansion properties in complex networks , 2006, Europhysics Letters (EPL).
[35] Ernesto Estrada,et al. Network robustness to targeted attacks. The interplay of expansibility and degree distribution , 2006 .
[36] Ernesto Estrada. Topological structural classes of complex networks. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.
[37] Csaba Böde,et al. Network analysis of protein dynamics , 2007, FEBS letters.
[38] P Fariselli,et al. The effect of backbone on the small-world properties of protein contact maps , 2008, Physical biology.
[39] Lourdes Santana,et al. Proteomics, networks and connectivity indices , 2008, Proteomics.
[40] Jan M. Kriegl,et al. Form follows function: Shape analysis of protein cavities for receptor‐based drug design , 2009, Proteomics.
[41] Wagner Meira,et al. Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins , 2009, Proteins.