Multi-Scale Modeling in Morphogenesis: A Critical Analysis of the Cellular Potts Model

Cellular Potts models (CPMs) are used as a modeling framework to elucidate mechanisms of biological development. They allow a spatial resolution below the cellular scale and are applied particularly when problems are studied where multiple spatial and temporal scales are involved. Despite the increasing usage of CPMs in theoretical biology, this model class has received little attention from mathematical theory. To narrow this gap, the CPMs are subjected to a theoretical study here. It is asked to which extent the updating rules establish an appropriate dynamical model of intercellular interactions and what the principal behavior at different time scales characterizes. It is shown that the longtime behavior of a CPM is degenerate in the sense that the cells consecutively die out, independent of the specific interdependence structure that characterizes the model. While CPMs are naturally defined on finite, spatially bounded lattices, possible extensions to spatially unbounded systems are explored to assess to which extent spatio-temporal limit procedures can be applied to describe the emergent behavior at the tissue scale. To elucidate the mechanistic structure of CPMs, the model class is integrated into a general multiscale framework. It is shown that the central role of the surface fluctuations, which subsume several cellular and intercellular factors, entails substantial limitations for a CPM's exploitation both as a mechanistic and as a phenomenological model.

[1]  Tatsuzo Nagai,et al.  Vertex Dynamics of Two-Dimensional Cellular Patterns , 1988 .

[2]  G. Oster,et al.  The mechanical basis of cell rearrangement. I. Epithelial morphogenesis during Fundulus epiboly. , 1990, Development.

[3]  J. T. Cox,et al.  On the long term behavior of some finite particle systems , 1990 .

[4]  Yuki Suzuki,et al.  Invariant measures for the multitype voter model , 1991 .

[5]  A. Masi,et al.  Mathematical Methods for Hydrodynamic Limits , 1991 .

[6]  Glazier,et al.  Simulation of the differential adhesion driven rearrangement of biological cells. , 1993, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[7]  P. Hogeweg,et al.  Modelling Morphogenesis: From Single Cells to Crawling Slugs. , 1997, Journal of theoretical biology.

[8]  S. Varadhan,et al.  Diffusive limit of lattice gas with mixing conditions , 1997 .

[9]  P. Hogeweg,et al.  Modelling Morphogenesis: From Single Cells to Crawling Slugs. , 1997, Journal of theoretical biology.

[10]  T. Liggett,et al.  Stochastic Interacting Systems: Contact, Voter and Exclusion Processes , 1999 .

[11]  John Odentrantz,et al.  Markov Chains: Gibbs Fields, Monte Carlo Simulation, and Queues , 2000, Technometrics.

[12]  P. Hogeweg,et al.  Evolving mechanisms of morphogenesis: on the interplay between differential adhesion and cell differentiation. , 2000, Journal of theoretical biology.

[13]  James A Glazier,et al.  Simulating convergent extension by way of anisotropic differential adhesion. , 2003, Journal of theoretical biology.

[14]  Yasuji Sawada,et al.  Improving the realism of the cellular Potts model in simulations of biological cells , 2003 .

[15]  Nicholas J Savill,et al.  Control of epidermal stem cell clusters by Notch-mediated lateral induction. , 2003, Developmental biology.

[16]  Kevin J Painter,et al.  From a discrete to a continuous model of biological cell movement. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[17]  Roeland M. H. Merks,et al.  A cell-centered approach to developmental biology , 2005 .

[18]  T. Newman,et al.  Modeling multicellular systems using subcellular elements. , 2005, Mathematical biosciences and engineering : MBE.

[19]  Alexandra Jilkine,et al.  Polarization and Movement of Keratocytes: A Multiscale Modelling Approach , 2006, Bulletin of mathematical biology.

[20]  Paulien Hogeweg,et al.  Moving Forward Moving Backward: Directional Sorting of Chemotactic Cells due to Size and Adhesion Differences , 2006, PLoS Comput. Biol..

[21]  P. Hogeweg,et al.  The Cellular Potts Model and Biophysical Properties of Cells, Tissues and Morphogenesis , 2007 .

[22]  Alexander R. A. Anderson,et al.  Single-Cell-Based Models in Biology and Medicine , 2007 .

[23]  Mark Alber,et al.  Continuous macroscopic limit of a discrete stochastic model for interaction of living cells. , 2007, Physical review letters.

[24]  A. Deutsch,et al.  A New Mechanism for Collective Migration in Myxococcus xanthus , 2007 .

[25]  James A. Glazier,et al.  Magnetization to Morphogenesis: A Brief History of the Glazier-Graner-Hogeweg Model , 2007 .

[26]  Roeland M. H. Merks,et al.  The Glazier-Graner-Hogeweg Model: Extensions, Future Directions, and Opportunities for Further Study , 2007 .

[27]  M. Krieg,et al.  Tensile forces govern germ-layer organization in zebrafish , 2008, Nature Cell Biology.

[28]  Roeland M. H. Merks,et al.  Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth , 2005, PLoS Comput. Biol..

[29]  Roeland M. H. Merks,et al.  Modeling Morphogenesis in silico and in vitro: Towards Quantitative, Predictive, Cell-based Modeling , 2009 .

[30]  Frank Jülicher,et al.  Increased Cell Bond Tension Governs Cell Sorting at the Drosophila Anteroposterior Compartment Boundary , 2009, Current Biology.

[31]  Christophe Deroulers,et al.  Modeling tumor cell migration: From microscopic to macroscopic models. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[32]  Stefan Grosskinsky Warwick,et al.  Interacting Particle Systems , 2016 .

[33]  Matthew J Simpson,et al.  Migration of breast cancer cells: understanding the roles of volume exclusion and cell-to-cell adhesion. , 2010, Physical review. E, Statistical, nonlinear, and soft matter physics.

[34]  A. Czirók,et al.  Collective cell motion in endothelial monolayers , 2010, Physical biology.

[35]  A. Deutsch,et al.  The cellular basis of cell sorting kinetics. , 2010, Journal of theoretical biology.

[36]  B. Vasiev,et al.  Coordination of Cell Differentiation and Migration in Mathematical Models of Caudal Embryonic Axis Extension , 2011, PloS one.

[37]  Andreas Deutsch,et al.  Early Embryonic Vascular Patterning by Matrix-Mediated Paracrine Signalling: A Mathematical Model Study , 2011, PloS one.

[38]  T. Newman,et al.  Emergent cell and tissue dynamics from subcellular modeling of active biomechanical processes , 2011, Physical biology.

[39]  Akihiko Nakajima,et al.  Kinetics of the cellular Potts model revisited , 2011 .

[40]  Abbas Shirinifard,et al.  Computer Simulations of Cell Sorting Due to Differential Adhesion , 2011, PloS one.

[41]  Simon Tavaré,et al.  Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors , 2011, PLoS Comput. Biol..

[42]  Ehrhard Behrends Introduction to Markov Chains With Special Emphasis on Rapid Mixing , 2013 .