Computational modeling and quantitative physiology reveal central parameters for brassinosteroid-regulated early cell physiological processes linked to elongation growth of the Arabidopsis root
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K. Harter | U. Kummer | K. Schumacher | S. Shabala | L. Shabala | Nina Glöckner | Emanuele Scacchi | Friederike Wanke | S. Scholl | Ruth Großeholz | Leander Rohr | Luiselotte Rausch | Amelie-Jette Spazierer | E. Scacchi
[1] Jia Li,et al. SAUR15 interaction with BRI1 activates plasma membrane H+-ATPase to promote organ development of Arabidopsis , 2022, Plant physiology.
[2] A. Reiner-Benaim,et al. The root meristem is shaped by brassinosteroid control of cell geometry , 2021, Nature Plants.
[3] N. Guex,et al. A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root , 2021, Molecular plant.
[4] K. T. ten Tusscher,et al. Bootstrapping and Pinning down the Root Meristem; the Auxin–PLT–ARR Network Unites Robustness and Sensitivity in Meristem Growth Control , 2021, International journal of molecular sciences.
[5] M. Strnad,et al. Local brassinosteroid biosynthesis enables optimal root growth , 2020, Nature Plants.
[6] Ursula Kummer,et al. Impact of explicit area scaling on kinetic models involving multiple compartments , 2020, bioRxiv.
[7] K. T. ten Tusscher,et al. A Self-Organized PLT/Auxin/ARR-B Network Controls the Dynamics of Root Zonation Development in Arabidopsis thaliana. , 2020, Developmental cell.
[8] Jia Li,et al. Molecular Mechanisms of Brassinosteroid-Mediated Responses to Changing Environments in Arabidopsis , 2020, International journal of molecular sciences.
[9] Sebastian Wolf. Deviating from the Beaten Track: New Twists in Brassinosteroid Receptor Function , 2020, International journal of molecular sciences.
[10] Xiaoli Ma,et al. PscB: A Browser to Explore Plant Single Cell RNA-Sequencing Datasets , 2020 .
[11] K. Harter,et al. Specifying the role of BAK1-interacting receptor-like kinase 3 in brassinosteroid signaling. , 2020, Journal of integrative plant biology.
[12] Ursula Kummer,et al. Computational systems biology of cellular processes in Arabidopsis thaliana: an overview , 2019, Cellular and Molecular Life Sciences.
[13] M. Duszyn,et al. Cyclic nucleotide gated channels (CNGCs) in plant signalling-Current knowledge and perspectives. , 2019, Journal of plant physiology.
[14] K. Harter,et al. Three-Fluorophore FRET Enables the Analysis of Ternary Protein Association in Living Plant Cells , 2019, bioRxiv.
[15] Vivek Krishnakumar,et al. An ‘eFP‐Seq Browser’ for visualizing and exploring RNA sequencing data , 2019, The Plant journal : for cell and molecular biology.
[16] Shin-Ichiro Inoue,et al. Brassinosteroid Induces Phosphorylation of the Plasma Membrane H+-ATPase during Hypocotyl Elongation in Arabidopsis thaliana. , 2019, Plant & cell physiology.
[17] K. T. ten Tusscher,et al. In Silico Roots: Room for Growth. , 2019, Trends in plant science.
[18] Jia Li,et al. Thermal-Enhanced bri1-301 Instability Reveals a Plasma Membrane Protein Quality Control System in Plants , 2018, Front. Plant Sci..
[19] K. Harter,et al. BRI1 controls vascular cell fate in the Arabidopsis root through RLP44 and phytosulfokine signaling , 2018, Proceedings of the National Academy of Sciences.
[20] Ying Gu,et al. Impact of acidic pH on plant cell wall polysaccharide structure and dynamics: insights into the mechanism of acid growth in plants from solid-state NMR , 2018, Cellulose.
[21] Linchuan Liu,et al. A Temperature-Sensitive Misfolded bri1-301 Receptor Requires Its Kinase Activity to Promote Growth1[OPEN] , 2018, Plant Physiology.
[22] Wei Yuan,et al. BR-INSENSITIVE1 regulates hydrotropic response by interacting with plasma membrane H+-ATPases in Arabidopsis , 2018, Plant signaling & behavior.
[23] Riccardo Di Mambro,et al. Acidic cell elongation drives cell differentiation in the Arabidopsis root , 2018, The EMBO journal.
[24] L. Hothorn,et al. Mechanistic basis for the activation of plant membrane receptor kinases by SERK-family coreceptors , 2018, Proceedings of the National Academy of Sciences.
[25] M. Ibañes,et al. A Sizer model for cell differentiation in Arabidopsis thaliana root growth , 2018, Molecular systems biology.
[26] Xiaofeng Wang,et al. The Arabidopsis Leucine-Rich Repeat Receptor Kinase BIR3 Negatively Regulates BAK1 Receptor Complex Formation and Stabilizes BAK1 , 2017, Plant Cell.
[27] P. Benfey,et al. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root , 2017, Proceedings of the National Academy of Sciences.
[28] W. Busch,et al. Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana , 2017, Proceedings of the National Academy of Sciences.
[29] M. Ptashnyk,et al. Mathematical modelling and analysis of the brassinosteroid and gibberellin signalling pathways and their interactions. , 2017, Journal of theoretical biology.
[30] D. MacLean,et al. Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains , 2017, eLife.
[31] M. Lucas,et al. A multi-scale model of the interplay between cell signalling and hormone transport in specifying the root meristem of Arabidopsis thaliana. , 2016, Journal of theoretical biology.
[32] H. Juan,et al. Integrating Phosphoproteomics and Bioinformatics to Study Brassinosteroid-Regulated Phosphorylation Dynamics in Arabidopsis , 2015, BMC Genomics.
[33] K. Harter,et al. Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1[OPEN] , 2015, Plant Cell.
[34] Zhi-Yong Wang,et al. Spatiotemporal Brassinosteroid Signaling and Antagonism with Auxin Pattern Stem Cell Dynamics in Arabidopsis Roots , 2015, Current Biology.
[35] T. Cuin,et al. Receptor kinase-mediated control of primary active proton pumping at the plasma membrane. , 2014, The Plant journal : for cell and molecular biology.
[36] Zhi-Xin Wang,et al. Structural insights into the negative regulation of BRI1 signaling by BRI1-interacting protein BKI1 , 2014, Cell Research.
[37] K. Harter,et al. A receptor-like protein mediates the response to pectin modification by activating brassinosteroid signaling , 2014, Proceedings of the National Academy of Sciences.
[38] Michael P. Pound,et al. Systems Analysis of Auxin Transport in the Arabidopsis Root Apex[W][OPEN] , 2014, Plant Cell.
[39] Cyclic nucleotide gated channel 10 negatively regulates salt tolerance by mediating Na+ transport in Arabidopsis , 2014, Journal of Plant Research.
[40] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[41] S. D. de Vries,et al. A Mathematical Model for the Coreceptors SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE1 and SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE3 in BRASSINOSTEROID INSENSITIVE1-Mediated Signaling[C][W] , 2013, Plant Physiology.
[42] K. Harter,et al. Computational modelling of the BRI1 receptor system. , 2013, Plant, cell & environment.
[43] J. Borst,et al. Visualization of BRI 1 and BAK 1 ( SERK 3 ) membrane receptor hetero-oligomers during brassinosteroid signaling , 2013 .
[44] K. Harter,et al. The Arabidopsis B-type response regulator 18 homomerizes and positively regulates cytokinin responses. , 2012, The Plant journal : for cell and molecular biology.
[45] J. Molenaar,et al. A Mathematical Model for BRASSINOSTEROID INSENSITIVE1-Mediated Signaling in Root Growth and Hypocotyl Elongation1[W] , 2012, Plant Physiology.
[46] P. Benfey,et al. A Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis , 2012, PLoS genetics.
[47] K. Harter,et al. Latest News on Arabidopsis Brassinosteroid Perception and Signaling , 2011, Front. Plant Sci..
[48] Sven Sahle,et al. Applications and trends in systems biology in biochemistry , 2011, The FEBS journal.
[49] Christophe Godin,et al. The auxin signalling network translates dynamic input into robust patterning at the shoot apex , 2011, Molecular systems biology.
[50] Joachim Kilian,et al. The activation of the Arabidopsis P-ATPase 1 by the brassinosteroid receptor BRI1 is independent of threonine 948 phosphorylation , 2011, Plant signaling & behavior.
[51] J. Borst,et al. Quantification of the Brassinosteroid Insensitive1 Receptor in Planta1[C][W] , 2011, Plant Physiology.
[52] Ioannis Xenarios,et al. A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk , 2011, Bioinform..
[53] K. Harter,et al. A fast brassinolide-regulated response pathway in the plasma membrane of Arabidopsis thaliana. , 2011, The Plant journal : for cell and molecular biology.
[54] S. Clouse. Brassinosteroid Signal Transduction: From Receptor Kinase Activation to Transcriptional Networks Regulating Plant Development , 2011, Plant Cell.
[55] Cristina N Butterfield,et al. Development and Stem Cells Research Article , 2022 .
[56] Filip Vandenbussche,et al. Apoplastic Alkalinization Is Instrumental for the Inhibition of Cell Elongation in the Arabidopsis Root by the Ethylene Precursor 1-Aminocyclopropane-1-Carboxylic Acid1[W][OA] , 2011, Plant Physiology.
[57] Rainer Breitling,et al. What is Systems Biology? , 2010, Front. Physiology.
[58] C. Seidel,et al. Stem Cell Signaling in Arabidopsis Requires CRN to Localize CLV2 to the Plasma Membrane1[W][OA] , 2009, Plant Physiology.
[59] Sarala M. Wimalaratne,et al. The Systems Biology Graphical Notation , 2009, Nature Biotechnology.
[60] Kirstin Elgass,et al. Novel Application of Fluorescence Lifetime and Fluorescence Microscopy Enables Quantitative Access to Subcellular Dynamics in Plant Cells , 2009, PloS one.
[61] T. Pfannschmidt. Plant Signal Transduction , 2009, Methods in Molecular Biology.
[62] Michael Darsow,et al. ChEBI: a database and ontology for chemical entities of biological interest , 2007, Nucleic Acids Res..
[63] Daniel L. Mace,et al. A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns , 2007, Science.
[64] D. Christopher,et al. The cyclic nucleotide gated cation channel AtCNGC10 traffics from the ER via Golgi vesicles to the plasma membrane of Arabidopsis root and leaf cells , 2007, BMC Plant Biology.
[65] Nicholas J. Provart,et al. An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets , 2007, PloS one.
[66] S. Merlot,et al. Constitutive activation of a plasma membrane H+‐ATPase prevents abscisic acid‐mediated stomatal closure , 2007, The EMBO journal.
[67] D. Webb,et al. The cyclic nucleotide-gated calmodulin-binding channel AtCNGC10 localizes to the plasma membrane and influences numerous growth responses and starch accumulation in Arabidopsis thaliana , 2007, Planta.
[68] Mudita Singhal,et al. COPASI - a COmplex PAthway SImulator , 2006, Bioinform..
[69] Kris Vissenberg,et al. The Root Apex of Arabidopsis thaliana Consists of Four Distinct Zones of Growth Activities , 2006, Plant signaling & behavior.
[70] John M. Walker,et al. Arabidopsis Protocols , 2006, Methods in Molecular Biology™.
[71] Falk Schreiber,et al. VANTED: A system for advanced data analysis and visualization in the context of biological networks , 2006, BMC Bioinformatics.
[72] M. Palmgren,et al. Regulation of Plant Plasma Membrane H+- and Ca2+-ATPases by Terminal Domains , 2005, Journal of bioenergetics and biomembranes.
[73] J. Chory,et al. Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1 , 2005, Nature.
[74] Cathy H. Wu,et al. The Universal Protein Resource (UniProt) , 2004, Nucleic Acids Res..
[75] M. Palmgren,et al. Energization of Transport Processes in Plants. Roles of the Plasma Membrane H+-ATPase1 , 2004, Plant Physiology.
[76] B. André,et al. K+ channel interactions detected by a genetic system optimized for systematic studies of membrane protein interactions. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[77] A. Hager. Role of the plasma membrane H+-ATPase in auxin-induced elongation growth: historical and new aspects , 2003, Journal of Plant Research.
[78] F. Maathuis,et al. Energization of potassium uptake in Arabidopsis thaliana , 1993, Planta.
[79] S. Clouse. Brassinosteroid signal transduction: clarifying the pathway from ligand perception to gene expression. , 2002, Molecular cell.
[80] T. Altmann,et al. Brassinosteroid-Regulated Gene Expression , 2002, Plant Physiology.
[81] Dirk Inzé,et al. GATEWAY vectors for Agrobacterium-mediated plant transformation. , 2002, Trends in plant science.
[82] E. Blancaflor,et al. Changes in Root Cap pH Are Required for the Gravity Response of the Arabidopsis Root , 2001, Plant Cell.
[83] J. Chory,et al. BRI1 is a critical component of a plasma-membrane receptor for plant steroids , 2001, Nature.
[84] I. Newman,et al. Ion transport in roots: measurement of fluxes using ion-selective microelectrodes to characterize transporter function. , 2001, Plant, cell & environment.
[85] Daniel J. Cosgrove,et al. Loosening of plant cell walls by expansins , 2000, Nature.
[86] T. Hunter,et al. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase. , 2000, Plant physiology.
[87] Advanced patch-clamp techniques and single-channel analysis , 1999 .
[88] B. Regenberg,et al. C-terminal deletion analysis of plant plasma membrane H(+)-ATPase: yeast as a model system for solute transport across the plant plasma membrane. , 1995, The Plant cell.
[89] R. Serrano,et al. Identification of an autoinhibitory domain in the C-terminal region of the plant plasma membrane H(+)-ATPase. , 1991, The Journal of biological chemistry.
[90] M. Palmgren. Regulation of plant plasma membrane H+‐ATPase activity , 1991 .
[91] Judith L. Flippen-Anderson,et al. Plant Growth-Promoting Brassinosteroids , 1988 .
[92] R. Cerana,et al. Regulating effects of brassino steroids and of sterols on growth and H+ secretion in maize roots , 1984 .
[93] R. Cerana,et al. Effects of a brassinosteroid on growth and electrogenic proton extrusion in maize root segments , 1983 .
[94] R. Cerana,et al. Effects of a brassinosteroid on growth and electrogenic proton extrusion in Azuki bean epicotyls , 1983 .
[95] 日高 弘義,et al. 血小板のcyclic nucleotide (血小板) , 1976 .
[96] N. Higinbotham. Electropotentials of Plant Cells , 1973 .