A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
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Kim-Chuan Toh | Yinyu Ye | Pratik Biswas | Y. Ye | K. Toh | P. Biswas
[1] Y. Ye,et al. A Gradient Search Method to Round the Semideflnite Programming Relaxation Solution for Ad Hoc Wireless Sensor Network Localization , 2004 .
[2] H. Wolkowicz,et al. Approximate and exact completion problems for Euclidean distance matrices using semidefinite programming , 2005 .
[3] Di Wu,et al. An updated geometric build-up algorithm for solving the molecular distance geometry problems with sparse distance data , 2003, J. Glob. Optim..
[4] Jos F. Sturm,et al. A Matlab toolbox for optimization over symmetric cones , 1999 .
[5] Kim-Chuan Toh,et al. Solving semidefinite-quadratic-linear programs using SDPT3 , 2003, Math. Program..
[6] Jorge J. Moré,et al. E-optimal solutions to distance geometry problems via global continuation , 1995, Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding.
[7] Henry Wolkowicz,et al. Solving Euclidean Distance Matrix Completion Problems Via Semidefinite Programming , 1999, Comput. Optim. Appl..
[8] F. A. Lootsma. Distance Matrix Completion by Numerical Optimization , 1997 .
[9] Renato D. C. Monteiro,et al. A nonlinear programming algorithm for solving semidefinite programs via low-rank factorization , 2003, Math. Program..
[10] N. Guex,et al. SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling , 1997, Electrophoresis.
[11] Russ B. Altman,et al. Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances , 2001, J. Comput. Biol..
[12] Anthony Man-Cho So,et al. A semidefinite programming approach to tensegrity theory and realizability of graphs , 2006, SODA '06.
[13] Stephen P. Boyd,et al. Linear Matrix Inequalities in Systems and Control Theory , 1994 .
[14] Jorge J. Moré,et al. Global Continuation for Distance Geometry Problems , 1995, SIAM J. Optim..
[15] Holly Hui Jin,et al. Scalable sensor localization algorithms for wireless sensor networks , 2005 .
[16] Vladimir A. Yakubovich,et al. Linear Matrix Inequalities in System and Control Theory (S. Boyd, L. E. Ghaoui, E. Feron, and V. Balakrishnan) , 1995, SIAM Rev..
[17] Kim-Chuan Toh,et al. Solving Large Scale Semidefinite Programs via an Iterative Solver on the Augmented Systems , 2003, SIAM J. Optim..
[18] Michael A. Saunders,et al. SpaseLoc: An Adaptive Subproblem Algorithm for Scalable Wireless Sensor Network Localization , 2006, SIAM J. Optim..
[19] Alan George,et al. Computer Solution of Large Sparse Positive Definite , 1981 .
[20] Clifford Stein,et al. Approximation Algorithms for Semidefinite Packing Problems with Applications to Maxcut and Graph Coloring , 2005, IPCO.
[21] Qunfeng Dong,et al. A Geometric Build-Up Algorithm for Solving the Molecular Distance Geometry Problem with Sparse Distance Data , 2003, J. Glob. Optim..
[22] Yinyu Ye,et al. Convergence behavior of interior-point algorithms , 1993, Math. Program..
[23] Michael W. Trosset,et al. Applications of Multidimensional Scaling to Molecular Conformation , 1997 .
[24] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[25] B. Hendrickson. The Molecular Problem: Determining Conformation from Pairwise Distances , 1990 .
[26] E. Yaz. Linear Matrix Inequalities In System And Control Theory , 1998, Proceedings of the IEEE.
[27] Mona Singh,et al. The side-chain positioning problem: a semidefinite programming formulation with new rounding schemes , 2003, PCK50.
[28] Kilian Q. Weinberger,et al. Learning a kernel matrix for nonlinear dimensionality reduction , 2004, ICML.
[29] Yinyu Ye,et al. Semidefinite programming for ad hoc wireless sensor network localization , 2004, Third International Symposium on Information Processing in Sensor Networks, 2004. IPSN 2004.
[30] Zhijun Wu,et al. Mathematical Modeling of Protein Structure Using Distance Geometry , 2000 .
[31] Michael W. Trosset,et al. Extensions of Classical Multidimensional Scaling via Variable Reduction , 2002, Comput. Stat..
[32] Y. Ye,et al. A Distributed Method for Solving Semidefinite Programs Arising from Ad Hoc Wireless Sensor Network Localization , 2006 .
[33] Hongyuan Zha,et al. Analysis of an alignment algorithm for nonlinear dimensionality reduction , 2007 .
[34] Yinyu Ye,et al. Semidefinite programming based algorithms for sensor network localization , 2006, TOSN.
[35] Kim-Chuan Toh,et al. Semidefinite Programming Approaches for Sensor Network Localization With Noisy Distance Measurements , 2006, IEEE Transactions on Automation Science and Engineering.
[36] Timothy F. Havel,et al. An evaluation of the combined use of nuclear magnetic resonance and distance geometry for the determination of protein conformations in solution. , 1985, Journal of molecular biology.
[37] Jiawei Zhang,et al. An Improved Algorithm for Approximating the Radii of Point Sets , 2003, RANDOM-APPROX.
[38] Hongyuan Zha,et al. Principal Manifolds and Nonlinear Dimension Reduction via Local Tangent Space Alignment , 2002, ArXiv.
[39] Laurent El Ghaoui,et al. 3. Some Matrix Problems , 1994 .
[40] Xiong Zhang,et al. Solving Large-Scale Sparse Semidefinite Programs for Combinatorial Optimization , 1999, SIAM J. Optim..
[41] Monique Laurent,et al. Matrix Completion Problems , 2009, Encyclopedia of Optimization.
[42] Daniel McDonald,et al. Determining Protein Structure using the Distance Geometry Program APA , 1999, Comput. Chem..
[43] Gordon M. Crippen,et al. Distance Geometry and Molecular Conformation , 1988 .