Equilibrium free energies from nonequilibrium metadynamics.
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[1] A. Laio,et al. Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics. , 2006, The journal of physical chemistry. B.
[2] Alessandro Laio,et al. Anisotropy of Earth's D″ layer and stacking faults in the MgSiO3 post-perovskite phase , 2005, Nature.
[3] T. Bredow,et al. Reaction of surface hydroxyl groups with VO4H3 on anatase surfaces , 2005 .
[4] K. Gubbins,et al. Dissociation of water on defective carbon substrates. , 2005, Physical review letters.
[5] Exploring intramolecular reactions in complex systems with metadynamics: the case of the malonate anions. , 2005, The journal of physical chemistry. A.
[6] T. Ikeda,et al. Hydration structure of Y3+ and La3+ compared: an application of metadynamics. , 2005, The Journal of chemical physics.
[7] Bernd Ensing,et al. Perspective on the reactions between F- and CH3CH2F: the free energy landscape of the E2 and SN2 reaction channels. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[8] C. Dellago,et al. Biased sampling of nonequilibrium trajectories: can fast switching simulations outperform conventional free energy calculation methods? , 2005, The journal of physical chemistry. B.
[9] A. Laio,et al. Assessing the accuracy of metadynamics. , 2005, The journal of physical chemistry. B.
[10] A. Laio,et al. Flexible docking in solution using metadynamics. , 2005, Journal of the American Chemical Society.
[11] Chenggang Zhou,et al. Understanding and improving the Wang-Landau algorithm. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.
[12] T. Bredow,et al. Molecular dynamics investigation of oxygen vacancy diffusion in rutile. , 2005, Physical chemistry chemical physics : PCCP.
[13] Christoph Dellago,et al. Equilibrium Time Correlation Functions from Irreversible Transformations in Trajectory Space , 2004 .
[14] A. Laio,et al. Reconstructing the density of states by history-dependent metadynamics. , 2004, Physical review letters.
[15] Alessandro Laio,et al. Efficient exploration of reactive potential energy surfaces using Car-Parrinello molecular dynamics. , 2003, Physical review letters.
[16] I. Kevrekidis,et al. Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations , 2002, physics/0212108.
[17] A. Laio,et al. Escaping free-energy minima , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[18] C. W. Gear,et al. 'Coarse' integration/bifurcation analysis via microscopic simulators: Micro-Galerkin methods , 2002 .
[19] Eric F Darve,et al. Calculating free energies using average force , 2001 .
[20] D. Landau,et al. Efficient, multiple-range random walk algorithm to calculate the density of states. , 2000, Physical review letters.
[21] Hans Christian Öttinger,et al. General projection operator formalism for the dynamics and thermodynamics of complex fluids , 1998 .
[22] K. Schulten,et al. Molecular dynamics study of unbinding of the avidin-biotin complex. , 1997, Biophysical journal.
[23] C. Jarzynski. Nonequilibrium Equality for Free Energy Differences , 1996, cond-mat/9610209.
[24] P. Tavan,et al. Ligand Binding: Molecular Mechanics Calculation of the Streptavidin-Biotin Rupture Force , 1996, Science.
[25] Andrew E. Torda,et al. Local elevation: A method for improving the searching properties of molecular dynamics simulation , 1994, J. Comput. Aided Mol. Des..
[26] C. Gardiner. Handbook of Stochastic Methods , 1983 .
[27] Robert Zwanzig,et al. Memory Effects in Irreversible Thermodynamics , 1961 .