A synthetic biology approach to bio-chem-ICT: first moves towards chemical communication between synthetic and natural cells
暂无分享,去创建一个
Luisa Damiano | Fabio Mavelli | Pasquale Stano | Marco Messina | Giordano Rampioni | Francesca D'Angelo | Livia Leoni
[1] George M Church,et al. Towards synthesis of a minimal cell , 2006, Molecular systems biology.
[2] E. Hairer,et al. Solving Ordinary Differential Equations II: Stiff and Differential-Algebraic Problems , 2010 .
[3] B. Bassler,et al. Quorum sensing: cell-to-cell communication in bacteria. , 2005, Annual review of cell and developmental biology.
[4] Yutetsu Kuruma,et al. Compartmentalized reactions as a case of soft-matter biotechnology: synthesis of proteins and nucleic acids inside lipid vesicles , 2011 .
[5] M. Graham,et al. Control of gene expression , 1976 .
[6] Tadashi Nakano,et al. Molecular Communication , 2005 .
[7] Minami Yoda,et al. Towards an in vivo biologically inspired nanofactory. , 2007, Nature nanotechnology.
[8] Luisa Damiano,et al. Semi-synthetic minimal cells as a tool for biochemical ICT , 2012, Biosyst..
[9] S. Atkinson,et al. Quorum sensing and social networking in the microbial world , 2009, Journal of The Royal Society Interface.
[10] T. Traut,et al. A minimal gene set for cellular life derived by comparison of complete bacterial genomes , 1998 .
[11] Pasquale Stano,et al. Minimal cells: Relevance and interplay of physical and biochemical factors , 2011, Biotechnology journal.
[12] Natalio Krasnogor,et al. The imitation game—a computational chemical approach to recognizing life , 2006, Nature Biotechnology.
[13] K. Jaeger,et al. Bacterial lipases from Pseudomonas: regulation of gene expression and mechanisms of secretion. , 2000, Biochimie.
[14] Evelyn Fox Keller,et al. What Does Synthetic Biology Have to Do with Biology? , 2009, The Ethics of Biotechnology.
[15] B. Paegel,et al. Stepwise Synthesis of Giant Unilamellar Vesicles on a Microfluidic Assembly Line , 2011, Journal of the American Chemical Society.
[16] J W Szostak,et al. Reconstructing the emergence of cellular life through the synthesis of model protocells. , 2009, Cold Spring Harbor symposia on quantitative biology.
[17] Pier Luigi Luisi,et al. OPARIN'S REACTIONS REVISITED : ENZYMATIC SYNTHESIS OF POLY(ADENYLIC ACID) IN MICELLES AND SELF-REPRODUCING VESICLES , 1994 .
[18] Pasquale Stano,et al. Chemical approaches to synthetic biology. , 2009, Current opinion in biotechnology.
[19] Antoine Danchin,et al. Synthetic biology: discovering new worlds and new words , 2008, EMBO reports.
[20] D. van de Meent,et al. Environmental Exposure Assessment , 2007 .
[21] E. Hairer,et al. Solving Ordinary Differential Equations I , 1987 .
[22] Pier Luigi Luisi,et al. Self‐Reproduction of Micelles and Vesicles: Models for the Mechanisms of Life from the Perspective of Compartmented Chemistry , 2007 .
[23] Thomas H Segall-Shapiro,et al. Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome , 2010, Science.
[24] C Ronchi,et al. The tree of knowledge , 2014 .
[25] A. Moya,et al. Determination of the Core of a Minimal Bacterial Gene Set , 2004, Microbiology and Molecular Biology Reviews.
[26] D. Freire,et al. Gene regulation of rhamnolipid production in Pseudomonas aeruginosa--a review. , 2011, Bioresource technology.
[27] E. Greenberg,et al. Promoter specificity in Pseudomonas aeruginosa quorum sensing revealed by DNA binding of purified LasR. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[28] J. Sturgis,et al. Dimerization of the quorum sensing regulator RhlR: development of a method using EGFP fluorescence anisotropy , 2003, Molecular microbiology.
[29] W Szybalski,et al. In vivo and in vitro initiation of transcription. , 1974, Advances in experimental medicine and biology.
[30] A. Eckford,et al. Molecular Communication: Application areas of molecular communication , 2013 .
[31] Pasquale Stano,et al. Approaches to semi-synthetic minimal cells: a review , 2005, Naturwissenschaften.
[32] P. Luisi,et al. Protein expression in liposomes. , 1999, Biochemical and biophysical research communications.
[33] John S. McCaskill,et al. Biological and Chemical Information Technologies , 2011, FET.
[34] Hiroshi Kita,et al. Constructing partial models of cells. , 2010, Cold Spring Harbor perspectives in biology.
[35] Yutetsu Kuruma,et al. A synthetic biology approach to the construction of membrane proteins in semi-synthetic minimal cells. , 2009, Biochimica et biophysica acta.
[36] Rolf Pfeifer,et al. Understanding intelligence , 2020, Inequality by Design.
[37] David A. Weitz,et al. Production of Unilamellar Vesicles Using an Inverted Emulsion , 2003 .
[38] Richard I. Kitney,et al. Synthetic Biology — A Primer , 2012 .
[39] R. Maier. Biosurfactants: evolution and diversity in bacteria. , 2003, Advances in applied microbiology.
[40] F. Mavelli,et al. Kinetic models for autopoietic chemical systems: the role of fluctuations in a homeostatic regime , 2010, Physical biology.
[41] Tatsuya Suda,et al. Molecular Communication Technology as a Biological ICT , 2011 .
[42] David Harel,et al. A Turing-like test for biological modeling , 2005, Nature Biotechnology.
[43] Pier Luigi Luisi,et al. Liposome-mediated enzymatic synthesis of phosphatidylcholine as an approach to self-replicating liposomes , 1991 .
[44] B. Iglewski,et al. Active Efflux and Diffusion Are Involved in Transport of Pseudomonas aeruginosa Cell-to-Cell Signals , 1999, Journal of bacteriology.
[45] Fabio Mavelli,et al. Stochastic simulations of minimal cells: the Ribocell model , 2012, BMC Bioinformatics.
[46] P. Luisi,et al. Enzymatic RNA replication in self-reproducing vesicles: an approach to a minimal cell. , 1995, Biochemical and biophysical research communications.
[47] Satoshi Hiyama,et al. Molecular communication: Harnessing biochemical materials to engineer biomimetic communication systems , 2010, Nano Commun. Networks.
[48] K. Winzer,et al. Look who's talking: communication and quorum sensing in the bacterial world , 2007, Philosophical Transactions of the Royal Society B: Biological Sciences.
[49] E. Greenberg,et al. Acyl homoserine-lactone quorum-sensing signal generation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[50] Kazufumi Hosoda,et al. Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions. , 2010, Langmuir : the ACS journal of surfaces and colloids.
[51] V. Torchilin. Recent advances with liposomes as pharmaceutical carriers , 2005, Nature Reviews Drug Discovery.
[52] Luisa Damiano,et al. Chemical communication between synthetic and natural cells: a possible experimental design , 2013, WIVACE.
[53] Fabio Mavelli,et al. ENVIRONMENT: a computational platform to stochastically simulate reacting and self-reproducing lipid compartments , 2010, Physical biology.
[54] Lola Cañamero,et al. Grounding synthetic knowledge: An epistemological framework and criteria of relevance for the synthetic exploration of life, affect and social cognition , 2011, ECAL.
[55] M Wakabayashi,et al. Synthesis of functional protein in liposome. , 2001, Journal of bioscience and bioengineering.
[56] R. Titball. Bacterial phospholipases C , 1993, Microbiological reviews.
[57] R. Zimmer,et al. Experiment and mathematical modeling of gene expression dynamics in a cell-free system. , 2012, Integrative biology : quantitative biosciences from nano to macro.
[58] P. Luisi,et al. Polymerase chain reaction in liposomes. , 1995, Chemistry & biology.
[59] Quentin Hiernaux,et al. La biologie synthétique , 2012 .
[60] M. Cámara,et al. Quorum sensing and environmental adaptation in Pseudomonas aeruginosa: a tale of regulatory networks and multifunctional signal molecules. , 2009, Current opinion in microbiology.
[61] A. Griffin,et al. Social evolution theory for microorganisms , 2006, Nature Reviews Microbiology.
[62] G. Kaufmann,et al. Macromolecular inhibition of quorum sensing: enzymes, antibodies, and beyond. , 2011, Chemical reviews.
[63] D. Endy. Foundations for engineering biology , 2005, Nature.
[64] Benjamin G Davis,et al. Sugar synthesis in a protocellular model leads to a cell signalling response in bacteria. , 2009, Nature chemistry.
[65] H. Maturana,et al. De máquinas y seres vivos: Una teoría sobre la organización biológica , 1973 .
[66] Takuya Ueda,et al. Cell-free translation reconstituted with purified components , 2001, Nature Biotechnology.
[67] Luisa Damiano. Co-emergences in life and science: a double proposal for biological emergentism , 2010, Synthese.
[68] F. Varela,et al. Self-replicating micelles — A chemical version of a minimal autopoietic system , 1989, Origins of life and evolution of the biosphere.