Ion‐binding properties of the ClC chloride selectivity filter

The ClC channels are members of a large protein family of chloride (Cl−) channels and secondary active Cl− transporters. Despite their diverse functions, the transmembrane architecture within the family is conserved. Here we present a crystallographic study on the ion‐binding properties of the ClC selectivity filter in the close homolog from Escherichia coli (EcClC). The ClC selectivity filter contains three ion‐binding sites that bridge the extra‐ and intracellular solutions. The sites bind Cl− ions with mM affinity. Despite their close proximity within the filter, the three sites can be occupied simultaneously. The ion‐binding properties are found conserved from the bacterial transporter EcClC to the human Cl− channel ClC‐1, suggesting a close functional link between ion permeation in the channels and active transport in the transporters. In resemblance to K+ channels, ions permeate the ClC channel in a single file, with mutual repulsion between the ions fostering rapid conduction.

[1]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[2]  Benoît Roux,et al.  Electrostatics of ion stabilization in a ClC chloride channel homologue from Escherichia coli. , 2004, Journal of molecular biology.

[3]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[4]  J Navaza,et al.  Implementation of molecular replacement in AMoRe. , 2001, Acta crystallographica. Section D, Biological crystallography.

[5]  Roderick MacKinnon,et al.  Gating the Selectivity Filter in ClC Chloride Channels , 2003, Science.

[6]  R. Dutzler,et al.  X-ray structure of a ClC chloride channel at 3.0 Å reveals the molecular basis of anion selectivity , 2002, Nature.

[7]  B. Hille,et al.  Potassium channels as multi-ion single-file pores , 1978, The Journal of general physiology.

[8]  T. Jentsch,et al.  Permeation and Block of the Skeletal Muscle Chloride Channel, ClC-1, by Foreign Anions , 1998, The Journal of general physiology.

[9]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[10]  Roderick MacKinnon,et al.  Energetic optimization of ion conduction rate by the K+ selectivity filter , 2001, Nature.

[11]  V. Stein,et al.  Molecular structure and physiological function of chloride channels. , 2002, Physiological reviews.

[12]  A. Parsegian,et al.  Energy of an Ion crossing a Low Dielectric Membrane: Solutions to Four Relevant Electrostatic Problems , 1969, Nature.

[13]  Thomas J. Jentsch,et al.  Gating of the voltage-dependent chloride channel CIC-0 by the permeant anion , 1995, Nature.

[14]  B. Chait,et al.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity. , 1998, Science.

[15]  C. Miller,et al.  Nonequilibrium gating and voltage dependence of the ClC-0 Cl- channel , 1996, The Journal of general physiology.

[16]  Michael Pusch,et al.  Gating Competence of Constitutively Open CLC-0 Mutants Revealed by the Interaction with a Small Organic Inhibitor , 2003, The Journal of general physiology.

[17]  Merritt Maduke,et al.  High-Level Expression, Functional Reconstitution, and Quaternary Structure of a Prokaryotic Clc-Type Chloride Channel , 1999, The Journal of general physiology.

[18]  C. Miller,et al.  A voltage-gated anion channel from the electric organ of Torpedo californica. , 1979, The Journal of biological chemistry.

[19]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[20]  Mei-fang Chen,et al.  Side-chain Charge Effects and Conductance Determinants in the Pore of ClC-0 Chloride Channels , 2003, The Journal of general physiology.

[21]  C. Miller,et al.  Probes of the conduction process of a voltage-gated Cl- channel from Torpedo electroplax , 1981, The Journal of general physiology.

[22]  Michael Pusch,et al.  Chloride/proton antiporter activity of mammalian CLC proteins ClC-4 and ClC-5 , 2005, Nature.

[23]  R. Dutzler Structural basis for ion conduction and gating in ClC chloride channels , 2004, FEBS letters.

[24]  R. MacKinnon,et al.  The occupancy of ions in the K+ selectivity filter: charge balance and coupling of ion binding to a protein conformational change underlie high conduction rates. , 2003, Journal of molecular biology.

[25]  R. MacKinnon,et al.  Ion binding affinity in the cavity of the KcsA potassium channel. , 2004, Biochemistry.

[26]  Merritt Maduke,et al.  Cysteine Accessibility in ClC-0 Supports Conservation of the ClC Intracellular Vestibule , 2005, The Journal of general physiology.

[27]  Carole Williams,et al.  Ionic Currents Mediated by a Prokaryotic Homologue of CLC Cl− Channels , 2004, The Journal of general physiology.

[28]  Michael Pusch,et al.  Conservation of Chloride Channel Structure Revealed by an Inhibitor Binding Site in ClC-1 , 2003, Neuron.

[29]  Christopher Miller,et al.  Secondary active transport mediated by a prokaryotic homologue of ClC Cl- channels , 2004, Nature.

[30]  T. Jentsch,et al.  Voltage-dependent electrogenic chloride/proton exchange by endosomal CLC proteins , 2005, Nature.

[31]  A. George,et al.  Mechanism of voltage-dependent gating in skeletal muscle chloride channels. , 1996, Biophysical journal.

[32]  R. MacKinnon,et al.  Chemistry of ion coordination and hydration revealed by a K+ channel–Fab complex at 2.0 Å resolution , 2001, Nature.