Identification of functional features of synthetic SINEUPs, antisense lncRNAs that specifically enhance protein translation
暂无分享,去创建一个
Piero Carninci | Toshio Yamazaki | Silvia Zucchelli | Hazuki Takahashi | Ana Kozhuharova | Harshita Sharma | Masakazu Hirose | Takako Ohyama | Francesca Fasolo | Diego Cotella | Claudio Santoro | Stefano Gustincich | Piero Carninci | Hazuki Takahashi | S. Gustincich | S. Zucchelli | C. Santoro | T. Yamazaki | F. Fasolo | D. Cotella | Takako Ohyama | Harshita Sharma | A. Kozhuharova | Masakazu Hirose
[1] J. Häsler,et al. Alu RNP and Alu RNA regulate translation initiation in vitro , 2006, Nucleic acids research.
[2] J. Lieberman,et al. Knocking down disease: a progress report on siRNA therapeutics , 2015, Nature Reviews Genetics.
[3] C. Wahlestedt,et al. Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation , 2012, Nature Biotechnology.
[4] N Okada,et al. SINE insertions: powerful tools for molecular systematics. , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.
[5] S. Gustincich,et al. The Yin and Yang of nucleic acid-based therapy in the brain , 2017, Progress in Neurobiology.
[6] C. Schmid,et al. Potential Alu Function: Regulation of the Activity of Double-Stranded RNA-Activated Kinase PKR , 1998, Molecular and Cellular Biology.
[7] Robert H. Silverman,et al. Activation of the interferon system by short-interfering RNAs , 2003, Nature Cell Biology.
[8] S. Batalov,et al. Antisense Transcription in the Mammalian Transcriptome , 2005, Science.
[9] Celso A. Espinoza,et al. Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription. , 2007, RNA.
[10] N. Okada,et al. Unique mammalian tRNA-derived repetitive elements in dermopterans: the t-SINE family and its retrotransposition through multiple sources. , 2003, Molecular biology and evolution.
[11] J. Kawai,et al. Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[12] M. Mathews,et al. Interactions between double-stranded RNA regulators and the protein kinase DAI , 1992, Molecular and cellular biology.
[13] Piero Carninci,et al. 5′ end–centered expression profiling using cap-analysis gene expression and next-generation sequencing , 2012, Nature Protocols.
[14] Piero Carninci,et al. CAGE (cap analysis of gene expression): a protocol for the detection of promoter and transcriptional networks. , 2012, Methods in molecular biology.
[15] Qiangfeng Cliff Zhang,et al. Landscape and variation of RNA secondary structure across the human transcriptome , 2014, Nature.
[16] J. Goodrich,et al. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes , 2009, Proceedings of the National Academy of Sciences.
[17] Anna M. McGeachy,et al. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments , 2012, Nature Protocols.
[18] Yang Yu,et al. RNAe: an effective method for targeted protein translation enhancement by artificial non-coding RNA with SINEB2 repeat , 2015, Nucleic acids research.
[19] S. Gustincich,et al. Synthetic long non-coding RNAs [SINEUPs] rescue defective gene expression in vivo , 2016, Scientific Reports.
[20] Piero Carninci,et al. Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat , 2012, Nature.
[21] T. Morgan,et al. Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of β-secretase , 2008, Nature Medicine.
[22] J. Goodrich,et al. The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock , 2004, Nature Structural &Molecular Biology.
[23] Warren P Williams,et al. Increased levels of B1 and B2 SINE transcripts in mouse fibroblast cells due to minute virus of mice infection. , 2004, Virology.
[24] Piero Carninci,et al. Identification of antisense long noncoding RNAs that function as SINEUPs in human cells , 2016, Scientific Reports.
[25] Piero Carninci,et al. SINEUPs are modular antisense long non-coding RNAs that increase synthesis of target proteins in cells , 2015, Front. Cell. Neurosci..
[26] Yoosik Kim,et al. PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator , 2014, Genes & development.
[27] Piero Carninci,et al. Engineering mammalian cell factories with SINEUP noncoding RNAs to improve translation of secreted proteins. , 2015, Gene.
[28] Dimitri A Kramerov,et al. Short retroposons in eukaryotic genomes. , 2005, International review of cytology.
[29] Piero Carninci,et al. Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease , 2015, Front. Cell. Neurosci..
[30] Piero Carninci,et al. SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation , 2015, RNA biology.
[31] Xiulian Du,et al. UXT is a novel centrosomal protein essential for cell viability. , 2005, Molecular biology of the cell.
[32] Yu Zhang,et al. siRNA Versus miRNA as Therapeutics for Gene Silencing , 2015, Molecular therapy. Nucleic acids.
[33] Celso A. Espinoza,et al. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis , 2004, Nature Structural &Molecular Biology.
[34] S. Salzberg,et al. The Transcriptional Landscape of the Mammalian Genome , 2005, Science.
[35] B. Panning,et al. Activation of RNA polymerase III transcription of human Alu repetitive elements by adenovirus type 5: requirement for the E1b 58-kilodalton protein and the products of E4 open reading frames 3 and 6 , 1993, Molecular and cellular biology.
[36] S. Yamanaka,et al. Dynamic regulation of human endogenous retroviruses mediates factor-induced reprogramming and differentiation potential , 2014, Proceedings of the National Academy of Sciences.
[37] N. Hastie,et al. Most highly repeated dispersed DNA families in the mouse genome , 1984, Molecular and cellular biology.
[38] D. Latchman,et al. The human immunodeficiency virus tat protein increases the transcription of human Alu repeated sequences by increasing the activity of the cellular transcription factor TFIIIC. , 1992, Journal of Acquired Immune Deficiency Syndromes.
[39] Howard Y. Chang,et al. Structural imprints in vivo decode RNA regulatory mechanisms , 2015, Nature.
[40] M. Furtado,et al. Complementation of adenovirus virus-associated RNA I gene deletion by expression of a mutant eukaryotic translation initiation factor. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[41] A. Fire,et al. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.
[42] A. Sandelin,et al. Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance , 2014, Nature Genetics.
[43] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[44] H. Ropers,et al. Cloning and characterization of UXT, a novel gene in human Xp11, which is widely and abundantly expressed in tumor tissue. , 1999, Genomics.
[45] Piero Carninci,et al. Widespread genome transcription: new possibilities for RNA therapies. , 2014, Biochemical and biophysical research communications.
[46] J. Ortonne,et al. Transposable B2 SINE elements can provide mobile RNA polymerase II promoters , 2001, Nature Genetics.
[47] Howard Y. Chang,et al. Genome-wide measurement of RNA secondary structure in yeast , 2010, Nature.
[48] Hanshuo Zhang,et al. RNAe in a transgenic growth hormone mouse model shows potential for use in gene therapy , 2017, Biotechnology Letters.
[49] Geoffrey J. Faulkner,et al. Ubiquitous L1 Mosaicism in Hippocampal Neurons , 2015, Cell.