New Approaches for Crop Genetic Adaptation to the Abiotic Stresses Predicted with Climate Change

Extreme climatic variation is predicted with climate change this century. In many cropping regions, the crop environment will tend to be warmer with more irregular rainfall and spikes in stress levels will be more severe. The challenge is not only to raise agricultural production for an expanding population, but to achieve this under more adverse environmental conditions. It is now possible to systematically explore the genetic variation in historic local landraces by using GPS locators and world climate maps to describe the natural selection for local adaptation, and to identify candidate germplasm for tolerances to extreme stresses. The physiological and biochemical components of these expressions can be genomically investigated with candidate gene approaches and next generation sequencing. Wild relatives of crops have largely untapped genetic variation for abiotic and biotic stress tolerances, and could greatly expand the available domesticated gene pools to assist crops to survive in the predicted extremes of climate change, a survivalomics strategy. Genomic strategies can assist in the introgression of these valuable traits into the domesticated crop gene pools, where they can be better evaluated for crop improvement. The challenge is to increase agricultural productivity despite climate change. This calls for the integration of many disciplines from eco-geographical analyses of genetic resources to new advances in genomics, agronomy and farm management, underpinned by an understanding of how crop adaptation to climate is affected by genotype × environment interaction.

[1]  S. Jackson,et al.  Next-generation sequencing technologies and their implications for crop genetics and breeding. , 2009, Trends in biotechnology.

[2]  A. Flavell,et al.  Legume genetic resources: management, diversity assessment, and utilization in crop improvement , 2011, Euphytica.

[3]  R. Redden The effect of epistasis on chromosome mapping of quantitative characters in wheat. II. Agronomic characters , 1991 .

[4]  G. Xue,et al.  Molecular Dissection of Variation in Carbohydrate Metabolism Related to Water-Soluble Carbohydrate Accumulation in Stems of Wheat1[W] , 2007, Plant Physiology.

[5]  R. Naylor,et al.  Historical Warnings of Future Food Insecurity with Unprecedented Seasonal Heat , 2009, Science.

[6]  K. Basford,et al.  Using molecular markers to assess the effect of introgression on quantitative attributes of common bean in the Andean gene pool , 2004, Theoretical and Applied Genetics.

[7]  R. Trethowan,et al.  7. Genetics Options for Improving the Productivity of Wheat in Water-Limited and Temperature-Stressed Environments , 2011 .

[8]  Charles E. Reed Origins of agriculture , 1977 .

[9]  J. Ehlers,et al.  Heat tolerance of contrasting cowpea lines in short and long days , 1998 .

[10]  P. Langridge,et al.  Making the most of 'omics' for crop breeding. , 2011, Trends in biotechnology.

[11]  O. Edenhofer,et al.  Intergovernmental Panel on Climate Change (IPCC) , 2013 .

[12]  R. Bernardo Genomewide selection for rapid introgression of exotic germplasm in maize. , 2009 .

[13]  M. Baum,et al.  The yield correlations of selectable physiological traits in a population of advanced spring wheat lines grown in warm and drought environments , 2012 .

[14]  S. Jagadish,et al.  Genetic Adjustment to Changing Climates: Rice , 2011 .

[15]  R. Ford,et al.  Resistance to Ascochyta rabiei (Pass.) Lab. in a wild Cicer germplasm collection , 2005 .

[16]  J. L. Parra,et al.  Very high resolution interpolated climate surfaces for global land areas , 2005 .

[17]  Lukas H. Meyer,et al.  Summary for Policymakers , 2022, The Ocean and Cryosphere in a Changing Climate.

[18]  C. Tebaldi,et al.  Prioritizing Climate Change Adaptation Needs for Food Security in 2030 , 2008, Science.

[19]  G. Xue,et al.  Wild Relative and Transgenic Innovation for Enhancing Crop Adaptation to Warmer and Drier Climate , 2011 .

[20]  S. S. Yadav,et al.  History and origin of chickpea. , 2007 .

[21]  N. Turner,et al.  Synthesis of Regional Impacts and Global Agricultural Adjustments , 2011 .

[22]  V. Vadez,et al.  Responses to Increased Moisture Stress and Extremes: Whole Plant Response to Drought under Climate Change , 2011 .

[23]  J. Berger,et al.  Ecogeographic analysis of pea collection sites from China to determine potential sites with abiotic stresses , 2013, Genetic Resources and Crop Evolution.

[24]  P. Kersey,et al.  Analysis of the bread wheat genome using whole genome shotgun sequencing , 2012, Nature.

[25]  K. W. Finlay,et al.  The analysis of adaptation in a plant-breeding programme , 1963 .

[26]  T. Yang,et al.  Genetic diversity and relationship of global faba bean (Vicia faba L.) germplasm revealed by ISSR markers , 2011, Theoretical and Applied Genetics.

[27]  G. Ladizinsky,et al.  Plant Evolution under Domestication , 1998, Springer Netherlands.

[28]  P. Lawrence,et al.  Chinese adzuki bean germplasm: 1. Evaluation of agronomic traits , 2001 .

[29]  J. Hatfield,et al.  The potential of climate change adjustment in crops: a synthesis. , 2011 .

[30]  Sukumar Chakraborty,et al.  Plant adaptation to climate change—opportunities and priorities in breeding , 2012, Crop and Pasture Science.

[31]  W. Stephan,et al.  Nucleotide diversity patterns of local adaptation at drought‐related candidate genes in wild tomatoes , 2010, Molecular ecology.

[32]  S. Tanksley,et al.  Seed banks and molecular maps: unlocking genetic potential from the wild. , 1997, Science.

[33]  R. Varshney,et al.  Genomics-assisted breeding for crop improvement. , 2005, Trends in plant science.

[35]  J. Batley,et al.  Accessing complex crop genomes with next-generation sequencing , 2012, Theoretical and Applied Genetics.

[36]  H. Perales,et al.  Evolutionary response of landraces to climate change in centers of crop diversity , 2010, Evolutionary applications.

[37]  Y. Vigouroux,et al.  Selection for Earlier Flowering Crop Associated with Climatic Variations in the Sahel , 2011, PloS one.

[38]  R. Redden,et al.  Collection of pea ("Pisum sativum") and faba bean ("Vicia faba") germplasm in Yunnan , 2008 .

[39]  Long Yan,et al.  Analysis of a diverse global Pisum sp. collection and comparison to a Chinese local P. sativum collection with microsatellite markers , 2008, Theoretical and Applied Genetics.

[40]  A. Hall Breeding cowpea for future climates , 2011 .

[41]  K. Basford,et al.  Variation in adzuki bean (vigna angularis) germplasm grown in China , 2009 .

[42]  J. Hancock Plant Evolution and the Origin of Crop Species , 1992 .

[43]  R. Hajjar,et al.  The use of wild relatives in crop improvement: a survey of developments over the last 20 years , 2007, Euphytica.

[44]  M. Smale,et al.  Seed value chains for Sorghum and Millet in Mali: A state-based system in transition , 2008 .

[45]  Mukesh Jain,et al.  Transcriptome sequencing of wild chickpea as a rich resource for marker development. , 2012, Plant biotechnology journal.

[46]  Honor C. Prentice,et al.  Gene Flow and Introgression from Domesticated Plants into Their Wild Relatives , 1999 .

[47]  Rachel S. Meyer,et al.  Patterns and processes in crop domestication: an historical review and quantitative analysis of 203 global food crops. , 2012, The New phytologist.

[48]  Corinne Le Quéré,et al.  Climate Change 2013: The Physical Science Basis , 2013 .

[49]  D. Jordan,et al.  Exploring and Exploiting Genetic Variation from Unadapted Sorghum Germplasm in a Breeding Program , 2011 .

[50]  R. Singh,et al.  5.1. Impacts of High-Temperature Stress and Potential Opportunities for Breeding , 2011 .

[51]  G. Ladizinsky Origin of agriculture , 1998 .

[52]  J. Dvorak,et al.  Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence , 2011, BMC Genomics.

[53]  N. Turner,et al.  Viewpoint: Evolution of cultivated chickpea: four bottlenecks limit diversity and constrain adaptation. , 2003, Functional plant biology : FPB.

[54]  D. C. Uprety,et al.  Comparative Study on the Effect of Water Stress on the Photosynthesis and Water Relations of Triticale, Rye and Wheat , 1987 .

[55]  Yujiao Liu,et al.  Collecting and surveying landraces of pea ("Pisum sativum") and faba bean ("Vicia faba") in Qinghai province of China , 2008 .

[56]  R. Macknight,et al.  A conserved molecular basis for photoperiod adaptation in two temperate legumes , 2012, Proceedings of the National Academy of Sciences.

[57]  A. Sarker,et al.  Reconstructing an ancient bottleneck of the movement of the lentil (Lens culinaris ssp. culinaris) into South Asia , 2011, Genetic Resources and Crop Evolution.

[58]  H. Lotze-Campen 1.1. Climate Change, Population Growth, and Crop Production: An Overview , 2011 .

[59]  J. Rafalski,et al.  Association genetics in crop improvement. , 2010, Current opinion in plant biology.

[60]  A. Jarvis,et al.  Adaptation of the Potato Crop to Changing Climates , 2011 .

[61]  D. Zohary,et al.  Introgression in wheat via triploid hybrids1 , 1967, Heredity.

[62]  D. Zamir,et al.  Unused Natural Variation Can Lift Yield Barriers in Plant Breeding , 2004, PLoS biology.