Histone-like proteins of bacteria (review)

Four major families of bacterial histone-like proteins (HU, IHF, H-NS, FIS), united on the basis of structural similarity and performing specific structural and regulatory functions in the cell, are discussed. Histone-like proteins perform topological modification of the chromosome (twisting, bending, and folding) and directly regulate the functioning of promoters of individual operons. Histone-like proteins are critical for the regulation of cell metabolism, are involved in the response to environmental changes, and play a key role in the transition to and maintenance of the resting cells of bacteria.

[1]  A. Leonard,et al.  IHF and HU stimulate assembly of pre‐replication complexes at Escherichia coli oriC by two different mechanisms , 2002, Molecular microbiology.

[2]  S. Busby,et al.  Regulation by Nucleoid-Associated Proteins at the Escherichia coli nir Operon Promoter , 2008, Journal of bacteriology.

[3]  A. Ishihama,et al.  Twelve Species of the Nucleoid-associated Protein from Escherichia coli , 1999, The Journal of Biological Chemistry.

[4]  R. Mclaughlin,et al.  Streptococcal Histone-Like Protein: Primary Structure ofhlpA and Protein Binding to Lipoteichoic Acid and Epithelial Cells , 1998, Infection and Immunity.

[5]  F. Fang,et al.  Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA. , 2007, Genes & development.

[6]  Yongping Shao,et al.  Biochemical identification of base and phosphate contacts between Fis and a high-affinity DNA binding site. , 2008, Journal of molecular biology.

[7]  K. Derbyshire,et al.  The effect of host‐encoded nucleoid proteins on transposition: H‐NS influences targeting of both IS903 and Tn10 , 2004, Molecular microbiology.

[8]  Antoine Danchin,et al.  Large‐scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid‐associated protein, H‐NS , 2001, Molecular microbiology.

[9]  H. Nagamune,et al.  The essentiality and involvement of Streptococcus intermedius histone‐like DNA‐binding protein in bacterial viability and normal growth , 2008, Molecular microbiology.

[10]  S. Busby,et al.  Transcription activation by remodelling of a nucleoprotein assembly: the role of NarL at the FNR‐dependent Escherichia coli nir promoter , 2004, Molecular microbiology.

[11]  R. Wagner,et al.  Structural Basis for H-NS-mediated Trapping of RNA Polymerase in the Open Initiation Complex at the rrnB P1* , 2002, The Journal of Biological Chemistry.

[12]  M. Dreyfus,et al.  The Histone-Like Protein HU Does Not Obstruct Movement of T7 RNA Polymerase in Escherichia coli Cells but Stimulates Its Activity , 2002, Journal of bacteriology.

[13]  S. Goodman,et al.  Deformation of DNA during site-specific recombination of bacteriophage lambda: replacement of IHF protein by HU protein or sequence-directed bends. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[14]  T. Hackstadt,et al.  Regulation of the Chlamydia trachomatis Histone H1-Like Protein Hc2 Is IspE Dependent and IhtA Independent , 2006, Journal of bacteriology.

[15]  T. Megraw,et al.  The mitochondrial histone HM: an evolutionary link between bacterial HU and nuclear HMG1 proteins. , 1994, Biochimie.

[16]  C. Dorman,et al.  Domain organization and oligomerization among H-NS-like nucleoid-associated proteins in bacteria. , 1999, Trends in microbiology.

[17]  P. Bertin,et al.  H-NS in Gram-negative bacteria: a family of multifaceted proteins. , 2003, Trends in microbiology.

[18]  C. Wyman,et al.  Structural basis for preferential binding of H-NS to curved DNA. , 2001, Biochimie.

[19]  S. Aiyar,et al.  Contributions of UP Elements and the Transcription Factor FIS to Expression from the Seven rrn P1 Promoters inEscherichia coli , 2001, Journal of bacteriology.

[20]  R. Wagner,et al.  The Bacterial Regulatory Protein H-NS A Versatile Modulator of Nucleic Acid Structures , 2002, Biological chemistry.

[21]  Mark S. Thomas,et al.  Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. , 2002, Journal of molecular biology.

[22]  C. Yip,et al.  Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein , 2008, Nucleic acids research.

[23]  C. Ball,et al.  Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli , 1992, Journal of bacteriology.

[24]  M. F. White,et al.  The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes , 2008 .

[25]  K. Derbyshire,et al.  The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. , 2005, Genes & development.

[26]  B. Colonna,et al.  Involvement of FIS in the H‐NS‐mediated regulation of virF gene of Shigella and enteroinvasive Escherichia coli  ‡ , 2001, Molecular microbiology.

[27]  A. Travers,et al.  DNA supercoiling and transcription in Escherichia coli: The FIS connection. , 2001, Biochimie.

[28]  P. DiMario,et al.  Mycobacterium smegmatis histone-like protein Hlp is nucleoid associated. , 2009, FEMS microbiology letters.

[29]  C. Pon,et al.  Multimeric Self-assembly Equilibria Involving the Histone-like Protein H-NS , 2000, The Journal of Biological Chemistry.

[30]  M. Beltrame,et al.  Protein HU binds specifically to kinked DNA , 1993, Molecular microbiology.

[31]  F. Gros,et al.  Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Lucy Shapiro,et al.  The bacterial nucleoid: A highly organized and dynamic structure , 2005, Journal of cellular biochemistry.

[33]  R Kahmann,et al.  The E.coli fis promoter is subject to stringent control and autoregulation. , 1992, The EMBO journal.

[34]  S. Adhya,et al.  Repressor induced site‐specific binding of HU for transcriptional regulation , 1997, The EMBO journal.

[35]  B. Galán,et al.  Superimposed Levels of Regulation of the 4-Hydroxyphenylacetate Catabolic Pathway in Escherichia coli * , 2001, The Journal of Biological Chemistry.

[36]  S. Rimsky Structure of the histone-like protein H-NS and its role in regulation and genome superstructure. , 2004, Current opinion in microbiology.

[37]  K. A. Walker,et al.  Functional Determinants of the Escherichia coli fis Promoter: Roles of −35, −10, and Transcription Initiation Regions in the Response to Stringent Control and Growth Phase-Dependent Regulation , 1999, Journal of bacteriology.

[38]  Mark S. Thomas,et al.  Downregulation of the Escherichia coli guaB promoter by FIS , 2008, Microbiology.

[39]  T. Tsuboi,et al.  Control of Cell Wall Assembly by a Histone-Like Protein in Mycobacteria , 2007, Journal of bacteriology.

[40]  F. Nolent,et al.  Hypernegative Supercoiling Inhibits Growth by Causing RNA Degradation , 2008, Journal of bacteriology.

[41]  V. DiRita,et al.  Regulation of gene expression in Vibrio cholerae by ToxT involves both antirepression and RNA polymerase stimulation , 2002, Molecular microbiology.

[42]  B. Sobral,et al.  Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system , 2008, BMC Microbiology.

[43]  D. Kamashev,et al.  The binding motif recognized by HU on both nicked and cruciform DNA , 1999, The EMBO journal.

[44]  T. Dick,et al.  Upregulation of a histone-like protein in dormant Mycobacterium smegmatis , 1998, Molecular and General Genetics MGG.

[45]  R. Dame,et al.  HU: promoting or counteracting DNA compaction? , 2002, FEBS letters.

[46]  T. Ottenhoff,et al.  Characterization of two heparan sulphate-binding sites in the mycobacterial adhesin Hlp , 2008, BMC Microbiology.

[47]  L. Steyn,et al.  The cold‐shock stress response in Mycobacterium smegmatis induces the expression of a histone‐like protein , 2001, Molecular microbiology.

[48]  M. R. Gerrero,et al.  Site-specific HU binding in the Mu transpososome: conversion of a sequence-independent DNA-binding protein into a chemical nuclease. , 1993, Genes & development.

[49]  P. Hagerman,et al.  DNA ring closure mediated by protein HU. , 1989, The Journal of biological chemistry.

[50]  G. Bhattacharyya,et al.  The C-terminal domain of HU-related histone-like protein Hlp from Mycobacterium smegmatis mediates DNA end-joining. , 2008, Biochemistry.

[51]  B. Pietrangeli,et al.  The interplay of StyR and IHF regulates substrate-dependent induction and carbon catabolite repression of styrene catabolism genes in Pseudomonas fluorescens ST , 2008, BMC Microbiology.

[52]  K. Swinger,et al.  IHF and HU: flexible architects of bent DNA. , 2004, Current opinion in structural biology.

[53]  A. Travers,et al.  A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli , 1999, Molecular microbiology.

[54]  C. Dorman,et al.  Regulation of gene expression by histone-like proteins in bacteria. , 2003, Current opinion in genetics & development.

[55]  W. Saenger,et al.  Three-dimensional structure of the E. coli DMA-binding protein FIS , 1991, Nature.

[56]  S. Altuvia,et al.  Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, Topoisomerase I and Fis , 2000, Molecular microbiology.