Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Emily S. Charlson | Chris I. Hunter | B. Birren | G. Cochrane | F. Bushman | G. Weinstock | P. Bork | R. Gibbs | M. Arumugam | J. Raes | D. Gevers | R. Knight | N. Pace | W. Ludwig | P. Dawyndt | F. Glöckner | M. Blaser | P. Buttigieg | N. Morrison | E. Sodergren | N. Kyrpides | J. Petrosino | J. Gilbert | K. Nelson | P. Rocca-Serra | J. Ravel | J. Wortman | R. Guralnick | N. Fierer | C. Lauber | Tanya Yatsunenko | R. Ley | J. Gordon | D. Relman | P. Hugenholtz | Folker Meyer | J. Fuhrman | S. Kelley | J. Tiedje | D. Field | C. Lozupone | P. Sterk | I. Karsch-Mizrachi | J. Stombaugh | J. Jansson | E. Costello | D. Knights | D. Ward | V. Bonazzi | Justin Kuczynski | B. Muegge | B. Methé | T. DeSantis | O. Koren | L. Proctor | P. Schloss | L. Schriml | S. Highlander | J. Cole | Joonhong Park | P. Chain | Robert Vaughan | R. Kottmann | Owen White | Elmar Pruesse | J. Peplies | Christian Quast | E. Maguire | L. Amaral-Zettler | Tim Booth | S. Nakielny | S. Ratnasingham | R. Sinha | M. Bailey | A. Whiteley | D. Nemergut | A. Spor | J. Neufeld | Anna E. Oliver | Andreas Wilke | Doug Wendel | A. Kau | M. Smith | Pelin Yilmaz | Anjanette Johnston | L. Baumgartner | Heather Huot-Creasy | R. Gallery | I. S. Gil | A. González | Wolfgang Hankeln | Jerry Kennedy | R. Larsen | T. Legg | Donna Lyons | Lindsay K. Newbold | G. Palanisamy | Susanna Assunta-Sansone | L. Newbold | E. Pruesse | Vivien Bonazzi | Vivien R. Bonazzi | J. Cole | R. Knight | Joonhong Park | A. Wilke | Jesse Stombaugh | Manimozhiyan Arumugam | J. Gordon

[1]  Robert Hanner,et al.  Data Standards for BARCODE Records in INSDC (BRIs) , 2012 .

[2]  Oliver Hofmann,et al.  ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level , 2010, Bioinform..

[3]  Renzo Kottmann,et al.  MetaBar - a tool for consistent contextual data acquisition and standards compliant submission , 2010, BMC Bioinformatics.

[4]  E. Delong,et al.  Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses. , 2010, Environmental microbiology.

[5]  Dawn Field,et al.  The seasonal structure of microbial communities in the Western English Channel. , 2009, Environmental microbiology.

[6]  Mark J. Bailey,et al.  TerraGenome: a consortium for the sequencing of a soil metagenome , 2009, Nature Reviews Microbiology.

[7]  James R. Cole,et al.  The Ribosomal Database Project: improved alignments and new tools for rRNA analysis , 2008, Nucleic Acids Res..

[8]  Nigel W. Hardy,et al.  Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project , 2008, Nature Biotechnology.

[9]  Renzo Kottmann,et al.  A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). , 2008, Omics : a journal of integrative biology.

[10]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[11]  W. Ludwig,et al.  SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB , 2007, Nucleic acids research.

[12]  R. Knight,et al.  The Human Microbiome Project , 2007, Nature.

[13]  M. Kuypers,et al.  New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation , 2007, The ISME Journal.

[14]  Jed A. Fuhrman,et al.  Richness and Diversity of Bacterioplankton Species along an Estuarine Gradient in Moreton Bay, Australia , 2004, Applied and Environmental Microbiology.

[15]  Jan Sapp,et al.  Microbial Phylogeny and Evolution: concepts and controversies. , 2004 .

[16]  S. Giovannoni,et al.  The uncultured microbial majority. , 2003, Annual review of microbiology.

[17]  J. Baross,et al.  Temporal Changes in Archaeal Diversity and Chemistry in a Mid-Ocean Ridge Subseafloor Habitat , 2002, Applied and Environmental Microbiology.

[18]  Ramon Massana,et al.  Study of Genetic Diversity of Eukaryotic Picoplankton in Different Oceanic Regions by Small-Subunit rRNA Gene Cloning and Sequencing , 2001, Applied and Environmental Microbiology.

[19]  R. Wachter,et al.  Oceanic 18S rDNA sequences from picoplankton reveal unsuspected eukaryotic diversity , 2001, Nature.

[20]  C. Pedrós-Alió,et al.  Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton , 2001, Nature.

[21]  Michael Wagner,et al.  Diversity of Sulfate-Reducing Bacteria in Oxic and Anoxic Regions of a Microbial Mat Characterized by Comparative Analysis of Dissimilatory Sulfite Reductase Genes , 1999, Applied and Environmental Microbiology.

[22]  J. Zehr,et al.  New Nitrogen-Fixing Microorganisms Detected in Oligotrophic Oceans by Amplification of Nitrogenase (nifH) Genes , 1998, Applied and Environmental Microbiology.

[23]  M Weizenegger,et al.  Bacterial phylogeny based on comparative sequence analysis (review) , 1998, Electrophoresis.

[24]  N. Pace.  A molecular view of microbial diversity and the biosphere. , 1997, Science.

[25]  E. Delong.  Archaea in coastal marine environments. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[26]  A. Davis.  Novel major archaebacterial group from marine plankton , 1992, Nature.

[27]  D. M. Ward,et al.  16S rRNA sequences reveal numerous uncultured microorganisms in a natural community , 1990, Nature.

[28]  S. Giovannoni,et al.  Genetic diversity in Sargasso Sea bacterioplankton , 1990, Nature.

[29]  N. Pace,et al.  Analysis of Hydrothermal Vent-Associated Symbionts by Ribosomal RNA Sequences , 1984, Science.