The shape of the DNA minor groove directs binding by the DNA-bending protein Fis.
暂无分享,去创建一个
[1] M. Simon,et al. Fis binding to the recombinational enhancer of the Hin DNA inversion system. , 1987, Genes & development.
[2] S. McLeod,et al. Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis. , 2006, Journal of molecular biology.
[3] Dietrich Suck,et al. Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA , 1986, Nature.
[4] H M Berman,et al. A standard reference frame for the description of nucleic acid base-pair geometry. , 2001, Journal of molecular biology.
[5] Yongping Shao,et al. Biochemical identification of base and phosphate contacts between Fis and a high-affinity DNA binding site. , 2008, Journal of molecular biology.
[6] R. C. Johnson,et al. Identification of two functional regions in Fis: the N‐terminus is required to promote Hin‐mediated DNA inversion but not lambda excision. , 1991, The EMBO journal.
[7] S. McLeod,et al. The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter. , 2002, Journal of molecular biology.
[8] S. Neidle. Oxford handbook of nucleic acid structure , 1998 .
[9] Michael A. Crickmore,et al. Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure , 2007, Cell.
[10] R. Gourse,et al. Molecular anatomy of a transcription activation patch: FIS–RNA polymerase interactions at the Escherichia coli rrnB P1 promoter , 1997, The EMBO journal.
[11] D. Perkins-Balding,et al. Location, degree, and direction of DNA bending associated with the Hin recombinational enhancer sequence and Fis-enhancer complex , 1997, Journal of bacteriology.
[12] Reid C. Johnson,et al. Fis targets assembly of the Xis nucleoprotein filament to promote excisive recombination by phage lambda. , 2007, Journal of molecular biology.
[13] Janez Plavec,et al. A unified model for the origin of DNA sequence-directed curvature. , 2003, Biopolymers.
[14] C. Ball,et al. Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli , 1992, Journal of bacteriology.
[15] Reid C. Johnson,et al. The −35 sequence location and the Fis–sigma factor interface determine σS selectivity of the proP (P2) promoter in Escherichia coli , 2007, Molecular microbiology.
[16] Randy J Read,et al. Electronic Reprint Biological Crystallography Phenix: Building New Software for Automated Crystallographic Structure Determination Biological Crystallography Phenix: Building New Software for Automated Crystallographic Structure Determination , 2022 .
[17] A. Travers,et al. The Escherichia coli FIS protein is not required for the activation of tyrT transcription on entry into exponential growth. , 1993, The EMBO journal.
[18] J. Feigon,et al. DNA A-tract bending in three dimensions : Solving the dA 4 T 4 vs . dT 4 A 4 conundrum , 2004 .
[19] T. D. Schneider,et al. Information analysis of Fis binding sites. , 1997, Nucleic acids research.
[20] J. Feigon,et al. DNA A-tract bending in three dimensions: solving the dA4T4 vs. dT4A4 conundrum. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] W. Colón,et al. Common and Variable Contributions of Fis Residues to High-Affinity Binding at Different DNA Sequences , 2006, Journal of bacteriology.
[22] Reid C. Johnson,et al. Chapter 8:Bending and Compaction of DNA by Proteins , 2008 .
[23] The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[24] W. Saenger,et al. Three-dimensional structure of the E. coli DMA-binding protein FIS , 1991, Nature.
[25] Xiang-Jun Lu,et al. 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures , 2008, Nature Protocols.
[26] R. Hegde. The papillomavirus E2 proteins: structure, function, and biology. , 2002, Annual review of biophysics and biomolecular structure.
[27] R. Mann,et al. The role of DNA shape in protein-DNA recognition , 2009, Nature.
[28] R. Kahmann,et al. The N-terminal part of the E.coli DNA binding protein FIS is essential for stimulating site-specific DNA inversion but is not required for specific DNA binding. , 1991, Nucleic acids research.
[29] A. Travers,et al. DNA supercoiling and transcription in Escherichia coli: The FIS connection. , 2001, Biochimie.
[30] R. C. Johnson,et al. The Fis protein: it's not just for DNA inversion anymore , 1992, Molecular microbiology.
[31] T. Steitz,et al. Correction of X-ray intensities from single crystals containing lattice-translocation defects. , 2005, Acta crystallographica. Section D, Biological crystallography.
[32] L. Williams,et al. High-resolution structure of an extended A-tract: [d(CGCAAATTTGCG)]2. , 2004, Journal of the American Chemical Society.
[33] Helen M Berman,et al. Signatures of protein-DNA recognition in free DNA binding sites. , 2009, Journal of molecular biology.
[34] Mark S. Thomas,et al. Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters. , 2002, Journal of molecular biology.
[35] T. Haran,et al. The unique structure of A-tracts and intrinsic DNA bending , 2009, Quarterly Reviews of Biophysics.
[36] Martin Phillips,et al. Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[37] G. Murshudov,et al. Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.
[38] R. C. Johnson,et al. Localization of amino acids required for Fis to function as a class II transcriptional activator at the RpoS-dependent proP P2 promoter. , 1999, Journal of molecular biology.
[39] Struther Arnott,et al. The structure of B-DNA in oriented fibers. , 1996, Journal of biomolecular structure & dynamics.
[40] H. Yuan,et al. Structural analysis of the transcriptional activation region on Fis: crystal structures of six Fis mutants with different activation properties. , 2000, Journal of molecular biology.
[41] H. Rozenberg,et al. DNA bending by an adenine–thymine tract and its role in gene regulation , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[42] S Brunak,et al. Genome organisation and chromatin structure in Escherichia coli. , 2001, Biochimie.
[43] R. C. Johnson,et al. Structure of the Escherichia coli Fis-DNA complex probed by protein conjugated with 1,10-phenanthroline copper(I) complex. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[44] Randy J. Read,et al. Phaser crystallographic software , 2007, Journal of applied crystallography.
[45] W. Arber,et al. Mutational analysis of a prokaryotic recombinational enhancer element with two functions. , 1989, The EMBO journal.
[46] V. Zhurkin,et al. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[47] R. Dickerson,et al. Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts. , 2001, Journal of molecular biology.
[48] R. Gourse,et al. The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter. , 1995, Journal of molecular biology.
[49] R Lavery,et al. The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. , 1988, Journal of biomolecular structure & dynamics.
[50] Yongping Shao,et al. Functional characterization of the Escherichia coli Fis-DNA binding sequence. , 2008, Journal of molecular biology.
[51] Byung-Kwan Cho,et al. Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. , 2008, Genome research.
[52] R J Read,et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.
[53] Gary Parkinson,et al. Structural Basis of Transcription Activation: The CAP-αCTD-DNA Complex , 2002, Science.
[54] R. Dickerson,et al. Testing water‐mediated DNA recognition by the Hin recombinase , 2002, The EMBO journal.
[55] W. Olson,et al. 3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. , 2003, Nucleic acids research.
[56] Kevin Cowtan,et al. research papers Acta Crystallographica Section D Biological , 2005 .
[57] C. Dorman. Nucleoid-associated proteins and bacterial physiology. , 2009, Advances in applied microbiology.
[58] Reid C. Johnson,et al. Major Nucleoid Proteins in the Structure and Function of the Escherichia coli Chromosome , 2005 .
[59] R. C. Johnson,et al. Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts. , 1996, Journal of molecular biology.
[60] Reid C. Johnson,et al. The transactivation region of the Fis protein that controls site‐specific DNA inversion contains extended mobile β‐hairpin arms , 1997, The EMBO journal.
[61] Andrew Travers,et al. Bacterial chromatin. , 2005, Current opinion in genetics & development.
[62] Yongli Zhang,et al. Predicting indirect readout effects in protein-DNA interactions. , 2004, Proceedings of the National Academy of Sciences of the United States of America.