Multiscale modeling of soft matter: scaling of dynamics.
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Kurt Kremer | Nico F A van der Vegt | Dominik Fritz | K. Kremer | N. V. D. van der Vegt | V. Harmandaris | Konstantin Koschke | Vagelis A Harmandaris | Konstantin Koschke | D. Fritz | Dominik Fritz | Kurt Kremer
[1] Kurt Kremer,et al. Ethylbenzene Diffusion in Polystyrene: United Atom Atomistic/ Coarse Grained Simulations and Experiments , 2007 .
[2] Gregory C Rutledge,et al. A novel algorithm for creating coarse-grained, density dependent implicit solvent models. , 2008, The Journal of chemical physics.
[3] Janna K. Maranas,et al. Dynamic evolution in coarse-grained molecular dynamics simulations of polyethylene melts. , 2007, The Journal of chemical physics.
[4] Kurt Kremer,et al. Comparative atomistic and coarse-grained study of water: What do we lose by coarse-graining? , 2009, The European physical journal. E, Soft matter.
[5] Kurt Kremer,et al. Hierarchical modeling of polystyrene: From atomistic to coarse-grained simulations , 2006 .
[6] J. Banavar,et al. Computer Simulation of Liquids , 1988 .
[7] A. Voter. Hyperdynamics: Accelerated Molecular Dynamics of Infrequent Events , 1997 .
[8] Alessandra Villa,et al. Self-assembling dipeptides: conformational sampling in solvent-free coarse-grained simulation. , 2009, Physical chemistry chemical physics : PCCP.
[9] A. Laio,et al. Escaping free-energy minima , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[10] G. Rutledge,et al. Coarse-grained, density dependent implicit solvent model reliably reproduces behavior of a model surfactant system. , 2009, The Journal of chemical physics.
[11] Florian Müller-Plathe,et al. Mapping atomistic simulations to mesoscopic models: a systematic coarse-graining procedure for vinyl polymer chains. , 2005, The journal of physical chemistry. B.
[12] Kurt Kremer,et al. Coarse-Grained Polymer Melts Based on Isolated Atomistic Chains: Simulation of Polystyrene of Different Tacticities , 2009 .
[13] Roger Smith,et al. Numerical calculations using the hyper-molecular dynamics simulation method , 2001 .
[14] Kurt Kremer,et al. Simulation of Polymer Melts. II. From Coarse-Grained Models Back to Atomistic Description , 1998 .
[15] Roland Faller,et al. Crossover from Unentangled to Entangled Dynamics in a Systematically Coarse-Grained Polystyrene Melt , 2006 .
[16] Alexander Lukyanov,et al. Versatile Object-Oriented Toolkit for Coarse-Graining Applications. , 2009, Journal of chemical theory and computation.
[17] Birgit Schiøtt,et al. Peptide aggregation and pore formation in a lipid bilayer: a combined coarse-grained and all atom molecular dynamics study. , 2008, Biophysical journal.
[18] D. Tieleman,et al. The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.
[19] Janna K. Maranas,et al. Speed up of dynamic observables in coarse-grained molecular-dynamics simulations of unentangled polymers. , 2005, The Journal of chemical physics.
[20] Ilpo Vattulainen,et al. Coarse-graining polymers with the MARTINI force-field: polystyrene as a benchmark case , 2011 .
[21] A. Laio,et al. Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science , 2008 .
[22] Kurt Kremer,et al. Bisphenol A Polycarbonate: Entanglement Analysis from Coarse-Grained MD Simulations , 2005 .
[23] Kurt Kremer,et al. Hierarchical modeling of polymer permeation , 2009 .
[24] Kurt Kremer,et al. A NEW MECHANISM FOR PENETRANT DIFFUSION IN AMORPHOUS POLYMERS : MOLECULAR DYNAMICS SIMULATIONS OF PHENOL DIFFUSION IN BISPHENOL-A-POLYCARBONATE , 1999 .
[25] George Floudas,et al. Temperature and Pressure Dependence of Polystyrene Dynamics through Molecular Dynamics Simulations and Experiments , 2011 .
[26] Florian Müller-Plathe,et al. Local Structure and Dynamics in Solvent-Swollen Polymers , 1996 .
[27] M. Antonietti,et al. Critical chain lengths in polystyrene bulk diffusion , 1987 .
[28] Kurt Kremer,et al. Predicting polymer dynamics at multiple length and time scales , 2009 .
[29] Florian Müller-Plathe,et al. Studying long-time dynamics of imidazolium-based ionic liquids with a systematically coarse-grained model. , 2010, Physical chemistry chemical physics : PCCP.
[30] A. Mark,et al. Coarse grained model for semiquantitative lipid simulations , 2004 .
[31] A. Voter. A method for accelerating the molecular dynamics simulation of infrequent events , 1997 .
[32] Kurt Kremer,et al. Simulation of polymer melts. I. Coarse‐graining procedure for polycarbonates , 1998 .
[33] Wilfred F van Gunsteren,et al. Comparison of thermodynamic properties of coarse-grained and atomic-level simulation models. , 2007, Chemphyschem : a European journal of chemical physics and physical chemistry.
[34] Jun-ichi Takimoto,et al. A coarse-graining procedure for flexible polymer chains with bonded and nonbonded interactions , 2002 .
[35] O. Urakawa,et al. Self-diffusion and viscosity of low molecular weight polystyrene over a wide temperature range , 2004 .
[36] Kurt Kremer,et al. Multiscale simulation of soft matter systems – from the atomistic to the coarse-grained level and back , 2009 .
[37] Kurt Kremer,et al. Comparison between coarse-graining models for polymer systems: Two mapping schemes for polystyrene , 2007 .
[38] Florian Müller-Plathe,et al. Transferability of coarse-grained force fields: the polymer case. , 2008, The Journal of chemical physics.
[39] Matej Praprotnik,et al. Multiscale simulation of soft matter: from scale bridging to adaptive resolution. , 2008, Annual review of physical chemistry.
[40] Jt Johan Padding,et al. Time and length scales of polymer melts studied by coarse-grained molecular dynamics simulations , 2002 .
[41] Hu-Jun Qian,et al. Temperature-Transferable Coarse-Grained potentials for ethylbenzene, polystyrene, and their mixtures , 2008 .
[42] F. Müller-Plathe,et al. Fast dynamics in coarse-grained polymer models: the effect of the hydrogen bonds. , 2008, The Journal of chemical physics.
[43] Kurt Kremer,et al. Multiscale simulation of soft matter systems. , 2010, Faraday discussions.
[44] E. Vanden-Eijnden,et al. Mori-Zwanzig formalism as a practical computational tool. , 2010, Faraday discussions.
[45] R. Larson,et al. The MARTINI Coarse-Grained Force Field: Extension to Proteins. , 2008, Journal of chemical theory and computation.
[46] G. Voth. Coarse-Graining of Condensed Phase and Biomolecular Systems , 2008 .
[47] Carsten Kutzner,et al. GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation. , 2008, Journal of chemical theory and computation.
[48] G. Fleischer. The chain length dependence of self-diffusion in melts of polyethylene and polystyrene , 1987 .
[49] Xingao Gong,et al. Hyper molecular dynamics with a local bias potential , 1999 .
[50] Chunggi Baig,et al. Quantitative Analysis on the Validity of a Coarse-Grained Model for Nonequilibrium Polymeric Liquids under Flow , 2010 .
[51] M. Parrinello,et al. Well-tempered metadynamics: a smoothly converging and tunable free-energy method. , 2008, Physical review letters.
[52] Kurt Kremer,et al. Dynamics of Polystyrene Melts through Hierarchical Multiscale Simulations , 2009 .
[53] K. Kremer,et al. Advanced Computer Simulation Approaches for Soft Matter Sciences III , 2005 .
[54] Alessandra Villa,et al. Self-assembling dipeptides: including solvent degrees of freedom in a coarse-grained model. , 2009, Physical chemistry chemical physics : PCCP.
[55] Gregory C Rutledge,et al. Evaluating the transferability of coarse-grained, density-dependent implicit solvent models to mixtures and chains. , 2009, The Journal of chemical physics.
[56] Kurt Kremer,et al. Long time atomistic polymer trajectories from coarse grained simulations: bisphenol-A polycarbonate. , 2006, Soft matter.
[57] Alessandra Villa,et al. Transferability of Nonbonded Interaction Potentials for Coarse-Grained Simulations: Benzene in Water. , 2010, Journal of chemical theory and computation.