The HUPO initiative on Model Organism Proteomes, iMOP

The community working on model organisms is growing steadily and the number of model organisms for which proteome data are being generated is continuously increasing. To standardize efforts and to make optimal use of proteomics data acquired from model organisms, a new Human Proteome Organisation (HUPO) initiative on model organism proteomes (iMOP) was approved at the HUPO Ninth Annual World Congress in Sydney, 2010. iMOP will seek to stimulate scientific exchange and disseminate HUPO best practices. The needs of model organism researchers for central databases will be better represented, catalyzing the integration of proteomics and organism‐specific databases. Full details of iMOP activities, members, tools and resources can be found at our website http://www.imop.uzh.ch/ and new members are invited to join us.

[1]  Lars Malmström,et al.  Quantitative proteomics of microbes: Principles and applications to virulence , 2011, Proteomics.

[2]  Shoshi Kikuchi,et al.  Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO) , 2011, Proteomics.

[3]  Cathy H. Wu,et al.  The Human Proteome Project: Current State and Future Direction , 2011, Molecular & Cellular Proteomics.

[4]  K. Hollung,et al.  Farm animal proteomics--a review. , 2011, Journal of proteomics.

[5]  Sandra K. Tanz,et al.  MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data1[C][OA] , 2010, Plant Physiology.

[6]  R. Aebersold,et al.  Generating and navigating proteome maps using mass spectrometry , 2010, Nature Reviews Molecular Cell Biology.

[7]  W. Weckwerth,et al.  Arabidopsis thaliana as a model organism for plant proteome research. , 2010, Journal of proteomics.

[8]  M. Hengartner,et al.  A worm rich in protein: Quantitative, differential, and global proteomics in Caenorhabditis elegans. , 2010, Journal of proteomics.

[9]  Ueli Grossniklaus,et al.  Model organisms--A historical perspective. , 2010, Journal of proteomics.

[10]  R. Aebersold,et al.  Model organism proteomics. , 2010, Journal of proteomics.

[11]  C. Ahrens,et al.  PeptideClassifier for protein inference and targeted quantitative proteomics , 2010, Nature Biotechnology.

[12]  Matthias Selbach,et al.  The SILAC Fly Allows for Accurate Protein Quantification in Vivo* , 2010, Molecular & Cellular Proteomics.

[13]  R. González-Fernández,et al.  Proteomics of Plant Pathogenic Fungi , 2010, Journal of biomedicine & biotechnology.

[14]  D. Zühlke,et al.  A Proteomic View of an Important Human Pathogen – Towards the Quantification of the Entire Staphylococcus aureus Proteome , 2009, PloS one.

[15]  Lennart Martens,et al.  The Proteomics Identifications database: 2010 update , 2009, Nucleic Acids Res..

[16]  R. Aebersold,et al.  Applying mass spectrometry-based proteomics to genetics, genomics and network biology , 2009, Nature Reviews Genetics.

[17]  R. Aebersold,et al.  Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans , 2009, Nature.

[18]  R. Aebersold,et al.  Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes , 2009, PLoS biology.

[19]  Samuel H. Payne,et al.  Discovery and revision of Arabidopsis genes by proteogenomics , 2008, Proceedings of the National Academy of Sciences.

[20]  Ruedi Aebersold,et al.  PhosphoPep—a database of protein phosphorylation sites in model organisms , 2008, Nature Biotechnology.

[21]  K. V. van Wijk,et al.  The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology. , 2008, Journal of proteome research.

[22]  P. Zimmermann,et al.  Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics , 2008, Science.

[23]  Vincent J. Denef,et al.  Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis. , 2007, Journal of proteome research.

[24]  B. Garcia,et al.  Organismal Differences in Post-translational Modifications in Histones H3 and H4* , 2007, Journal of Biological Chemistry.

[25]  Eric W. Deutsch,et al.  The PeptideAtlas project , 2005, Nucleic Acids Res..

[26]  L. Piater,et al.  Innate immunity in plants and animals: striking similarities and obvious differences , 2004, Immunological reviews.

[27]  Masatoshi Yamamoto.  Drosophila Genetic Resource and Stock Center; The National BioResource Project. , 2010, Experimental animals.

[28]  J. Garin,et al.  Chlamydomonas proteomics. , 2009, Current opinion in microbiology.