Markedly unbiased codon usage in Bacillus subtilis.

Codon usage for 21 Bacillus subtilis chromosomal genes was analyzed and found to be unusual compared with that of Escherichia coli or Saccharomyces cerevisiae. All codons are used more or less equally. The unusual codon usage in B. subtilis may be related to the unique organization of its tRNA genes.

[1]  H. Ozeki,et al.  Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents. , 1983, Cold Spring Harbor symposia on quantitative biology.

[2]  B. Vold Structure and organization of genes for transfer ribonucleic acid in Bacillus subtilis. , 1985, Microbiological reviews.

[3]  D. Henner,et al.  Nucleotide sequence of the Bacillus subtilis trpE and trpD genes. , 1984, Gene.

[4]  S. Moriya,et al.  Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region. , 1985, Nucleic acids research.

[5]  R. Losick,et al.  A promoter whose utilization is temporally regulated during sporulation in Bacillus subtilis. , 1984, Journal of molecular biology.

[6]  P. Stragier,et al.  Nucleotide sequence of the spo0B gene of Bacillus subtilis and regulation of its expression. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[7]  P. Stragier,et al.  A developmental gene product of Bacillus subtilis homologous to the sigma factor of Escherichia coli , 1984, Nature.

[8]  K. von Meyenburg,et al.  The nucleotide sequence of the dnaA gene and the first part of the dnaN gene of Escherichia coli K-12. , 1982, Nucleic acids research.

[9]  D. Henner,et al.  Cloning of the neutral protease gene of Bacillus subtilis and the use of the cloned gene to create an in vitro-derived deletion mutation , 1984, Journal of bacteriology.

[10]  J. Hansen,et al.  Structure and organization of a cluster of sic tRNA genes in the space between tandem ribosomal RNA gene sets in Bacillus subtilis. , 1983, The Journal of biological chemistry.

[11]  W. Konigsberg,et al.  Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[12]  J. Hoch,et al.  Sequence analysis of the spo0B locus reveals a polycistronic transcription unit , 1985, Journal of bacteriology.

[13]  T. Ikemura Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. , 1981, Journal of molecular biology.

[14]  T. Ikemura Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. , 1982, Journal of molecular biology.

[15]  A. Galizzi,et al.  Nucleotide sequence of the amylase gene from Bacillus subtilis. , 1983, Nucleic acids research.

[16]  C. Green,et al.  TRANSFER RNA GENE ORGANIZATION IN BACILLUS SUBTILIS1 , 1984 .

[17]  T. Atlung,et al.  Physical mapping and nucleotide sequence of the rnpA gene that encodes the protein component of ribonuclease P in Escherichia coli. , 1985, Gene.

[18]  E. Ferrari,et al.  Replacement of the Bacillus subtilis subtilisin structural gene with an In vitro-derived deletion mutation , 1984, Journal of bacteriology.

[19]  F. Ferrari CLONING AND SEQUENCE ANALYSIS OF THE spoOA LOCUS OF BACILLUS SUBTILIS1 , 1984 .

[20]  H. Ohmori,et al.  Structural analysis of the dnaA and dnaN genes of Escherichia coli. , 1984, Gene.

[21]  R. Doi,et al.  Bacillus subtilis dnaE encodes a protein homologous to DNA primase of Escherichia coli. , 1985, The Journal of biological chemistry.

[22]  L. W. Ream,et al.  Molecular analysis of the recF gene of Escherichia coli. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[23]  S. Moriya,et al.  Conservation of genes and their organization in the chromosomal replication origin region of Bacillus subtilis and Escherichia coli. , 1985, The EMBO journal.