Gene Dosage Balance in Cellular Pathways

THE gene dosage balance hypothesis (GDBH) proposes, in a narrow sense, that stoichiometric imbalances in macromolecular complexes can be a source of dominant phenotypes. Gene dosage balance in such complexes is required as a “here and now” condition, as a partial aneuploid carrying a deletion or

[1]  Richard W. Lusk,et al.  Organismal complexity, protein complexity, and gene duplicability , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[2]  H. Kacser,et al.  The molecular basis of dominance. , 1981, Genetics.

[3]  J. Birchler,et al.  Dosage-dependent gene regulation in multicellular eukaryotes: implications for dosage compensation, aneuploid syndromes, and quantitative traits. , 2001, Developmental biology.

[4]  S. Teichmann,et al.  Gene regulatory network growth by duplication , 2004, Nature Genetics.

[5]  U. Bhalla,et al.  Emergent properties of networks of biological signaling pathways. , 1999, Science.

[6]  C. Pál,et al.  Dosage sensitivity and the evolution of gene families in yeast , 2003, Nature.

[7]  T. Gregory,et al.  Coincidence, coevolution, or causation? DNA content, cellsize, and the C‐value enigma , 2001, Biological reviews of the Cambridge Philosophical Society.

[8]  Katherine C. Chen,et al.  Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. , 2003, Current opinion in cell biology.

[9]  Chi-Ying F. Huang,et al.  Ultrasensitivity in the mitogen-activated protein kinase cascade. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[10]  D. Koshland,et al.  An amplified sensitivity arising from covalent modification in biological systems. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[11]  Daniel R. Caffrey,et al.  The Evolution of the MAP Kinase Pathways: Coduplication of Interacting Proteins Leads to New Signaling Cascades , 1999, Journal of Molecular Evolution.

[12]  B. S. Baker,et al.  The evolution of dosage‐compensation mechanisms , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[13]  S. Teichmann,et al.  Genes Encoding Subunits of Stable Complexes Are Clustered on the Yeast Chromosomes , 2004, Genetics.

[14]  J. Collins,et al.  Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.

[15]  C. Widmann,et al.  Mitogen-activated protein kinase: conservation of a three-kinase module from yeast to human. , 1999, Physiological reviews.

[16]  R. Veitia,et al.  Nonlinear effects in macromolecular assembly and dosage sensitivity. , 2003, Journal of theoretical biology.

[17]  Guillaume Blanc,et al.  Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution , 2004, The Plant Cell Online.

[18]  Katherine C. Chen,et al.  Kinetic analysis of a molecular model of the budding yeast cell cycle. , 2000, Molecular biology of the cell.

[19]  R. Macnab,et al.  The gradient-sensing mechanism in bacterial chemotaxis. , 1972, Proceedings of the National Academy of Sciences of the United States of America.

[20]  C. Niehrs,et al.  Synexpression groups in eukaryotes , 1999, Nature.

[21]  A Goldbeter,et al.  A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[22]  F. Sherman Getting started with yeast. , 1991, Methods in enzymology.

[23]  B. Birren,et al.  Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae , 2004, Nature.

[24]  W. Makałowski Are we polyploids? A brief history of one hypothesis. , 2001, Genome research.

[25]  Nils Blüthgen,et al.  How robust are switches in intracellular signaling cascades? , 2003, Journal of theoretical biology.

[26]  Matthew W. Hahn,et al.  The evolution of transcriptional regulation in eukaryotes. , 2003, Molecular biology and evolution.

[27]  D. Koshland,et al.  Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects. , 1984, The Journal of biological chemistry.

[28]  R. Veitia,et al.  Exploring the etiology of haploinsufficiency. , 2002, BioEssays : news and reviews in molecular, cellular and developmental biology.

[29]  Graeme M. Walker,et al.  Yeast Physiology and Biotechnology , 1998 .

[30]  J E Ferrell,et al.  How regulated protein translocation can produce switch-like responses. , 1998, Trends in biochemical sciences.

[31]  E. Plahte,et al.  Gene regulatory networks generating the phenomena of additivity, dominance and epistasis. , 2000, Genetics.