Light-microscopy methods in C. elegans research
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Stephan Preibisch | Friedrich Preusser | Laura Breimann | S. Preibisch | F. Preusser | Laura Breimann | Friedrich Preusser
[1] K. Gengyo-Ando,et al. Characterization of HAF-4- and HAF-9-localizing organelles as distinct organelles in Caenorhabditis elegans intestinal cells , 2016, BMC Cell Biology.
[2] Andrew W. Folkmann,et al. High Efficiency, Homology-Directed Genome Editing in Caenorhabditis elegans Using CRISPR-Cas9 Ribonucleoprotein Complexes , 2015, Genetics.
[3] C. Holmberg,et al. Suppression of RNAi by dsRNA-Degrading RNaseIII Enzymes of Viruses in Animals and Plants , 2015, PLoS pathogens.
[4] Cori Bargmann,et al. High-throughput imaging of neuronal activity in Caenorhabditis elegans , 2013, Proceedings of the National Academy of Sciences.
[5] D. Dickinson,et al. Streamlined Genome Engineering with a Self-Excising Drug Selection Cassette , 2015, Genetics.
[6] J. Sulston,et al. Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. , 1977, Developmental biology.
[7] Walter Fontana,et al. The Caenorhabditis elegans Lifespan Machine , 2013, Nature Methods.
[8] Matthias Weiss,et al. Mechanical cues in the early embryogenesis of Caenorhabditis elegans. , 2013, Biophysical journal.
[9] Patrick T. McGrath,et al. Microfluidic platform with spatiotemporally controlled micro-environment for studying long-term C. elegans developmental arrests. , 2017, Lab on a chip.
[10] Dimos Gaidatzis,et al. Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery , 2012, Cell.
[11] Cornelia I. Bargmann,et al. Neuromodulatory Control of Long-Term Behavioral Patterns and Individuality across Development , 2017, Cell.
[12] R. Kerr,et al. Intracellular Ca2+ imaging in C. elegans. , 2006, Methods in molecular biology.
[13] I. A. Toker,et al. WorMachine: machine learning-based phenotypic analysis tool for worms , 2017, BMC Biology.
[14] Rex A. Kerr,et al. High-Throughput Behavioral Analysis in C. elegans , 2011, Nature Methods.
[15] T. Nagase,et al. A Genetically Encoded Probe for Live-Cell Imaging of H4K20 Monomethylation. , 2016, Journal of molecular biology.
[16] D. Norman,et al. Quantitative FLIM-FRET Microscopy to Monitor Nanoscale Chromatin Compaction In Vivo Reveals Structural Roles of Condensin Complexes. , 2017, Cell reports.
[17] C. Lanctôt,et al. Quantitative gene expression analysis in Caenorhabditis elegans using single molecule RNA FISH. , 2016, Methods.
[18] P. Dedecker,et al. Super-resolution mapping of glutamate receptors in C. elegans by confocal correlated PALM , 2015, Scientific Reports.
[19] E. Myers,et al. A 3D Digital Atlas of C. elegans and Its Application To Single-Cell Analyses , 2009, Nature Methods.
[20] Léo Guignard,et al. Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb , 2018, eLife.
[21] Timur Zhiyentayev,et al. Single-cell in situ RNA profiling by sequential hybridization , 2014, Nature Methods.
[22] Jürgen Hench,et al. Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps. , 2009, Developmental biology.
[23] D. Hall,et al. Modern electron microscopy methods for C. elegans. , 2012, Methods in cell biology.
[24] André E. X. Brown,et al. Changes in postural syntax characterize sensory modulation and natural variation of C. elegans locomotion , 2015 .
[25] A. Villeneuve,et al. Chromosome Painting Reveals Asynaptic Full Alignment of Homologs and HIM-8–Dependent Remodeling of X Chromosome Territories during Caenorhabditis elegans Meiosis , 2011, PLoS genetics.
[26] K. Oegema,et al. Expression and imaging of fluorescent proteins in the C. elegans gonad and early embryo. , 2008, Methods in cell biology.
[27] D. Yoon,et al. A simple and rapid method for combining fluorescent in situ RNA hybridization (FISH) and immunofluorescence in the C. elegans germline , 2016, MethodsX.
[28] Z. Bao,et al. The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. , 2015, Developmental cell.
[29] Stefanie Redemann,et al. Codon adaptation–based control of protein expression in C. elegans , 2011, Nature Methods.
[30] Andrew C. Adey,et al. Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing , 2017 .
[31] P. Insley,et al. Automated C. elegans embryo alignments reveal brain neuropil position invariance despite lax cell body placement , 2018, PloS one.
[32] M. Zimmer,et al. Energy Scarcity Promotes a Brain-wide Sleep State Modulated by Insulin Signaling in C. elegans , 2018, Cell reports.
[33] Takashi Kawashima,et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters , 2017, Nature Chemical Biology.
[34] S. Brenner,et al. The structure of the nervous system of the nematode Caenorhabditis elegans. , 1986, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[35] Wesley R. Legant,et al. Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution , 2014, Science.
[36] Aravinthan D. T. Samuel,et al. Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans , 2011, Nature Methods.
[37] E. Boyden,et al. Simultaneous whole-animal 3D-imaging of neuronal activity using light-field microscopy , 2014, Nature Methods.
[38] Fernando Amat,et al. Efficient processing and analysis of large-scale light-sheet microscopy data , 2015, Nature Protocols.
[39] Christopher V. Gabel,et al. Long-Term Imaging of Caenorhabditis elegans Using Nanoparticle-Mediated Immobilization , 2013, PloS one.
[40] O. Cohen-Fix,et al. Live-imaging analysis of germ cell proliferation in the C. elegans adult supports a stochastic model for stem cell proliferation. , 2017, Developmental biology.
[41] H. Schnabel,et al. Assessing normal embryogenesis in Caenorhabditis elegans using a 4D microscope: variability of development and regional specification. , 1997, Developmental biology.
[42] Eugene W. Myers,et al. Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos , 2010, Bioinform..
[43] William R. Schafer,et al. utomated imaging of neuronal activity in freely behaving Caenorhabditis elegans uliette , 2010 .
[44] Anthony Santella,et al. AceTree: a major update and case study in the long term maintenance of open-source scientific software , 2018, BMC Bioinformatics.
[45] A. deMello,et al. Long-term C. elegans immobilization enables high resolution developmental studies in vivo. , 2018, Lab on a chip.
[46] S. Teichmann,et al. Exponential scaling of single-cell RNA-seq in the past decade , 2017, Nature Protocols.
[47] Michael W. Davidson,et al. A bright monomeric green fluorescent protein derived from Branchiostoma lanceolatum , 2013, Nature Methods.
[48] Mitsuyoshi Ueda,et al. Cellomics approach for high-throughput functional annotation of Caenorhabditis elegans neural network , 2017, Scientific Reports.
[49] Single-molecule RNA Fluorescence in situ Hybridization (smFISH) in Caenorhabditis elegans. , 2017, Bio-protocol.
[50] Alexandra Bokinsky,et al. Dual-view plane illumination microscopy for rapid and spatially isotropic imaging , 2014, Nature Protocols.
[51] Axel Voigt,et al. Non-invasive perturbations of intracellular flow reveal physical principles of cell organization , 2018, Nature Cell Biology.
[52] S. Gu,et al. The spatial and temporal dynamics of nuclear RNAi-targeted retrotransposon transcripts in Caenorhabditis elegans , 2018, Development.
[53] Johannes E. Schindelin,et al. Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.
[54] C. Lanctôt. Analysis of the C. elegans Nucleolus by Immuno-DNA FISH. , 2016, Methods in molecular biology.
[55] Huafeng Liu,et al. Untwisting the Caenorhabditis elegans embryo , 2015, eLife.
[56] William M. McFadden,et al. Single-molecule analysis of cell surface dynamics in Caenorhabditis elegans embryos , 2014, Nature Methods.
[57] Hazen P Babcock,et al. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization , 2016, Proceedings of the National Academy of Sciences.
[58] Bob Goldstein,et al. Engineering the Caenorhabditis elegans Genome Using Cas9-Triggered Homologous Recombination , 2013, Nature Methods.
[59] R. Prevedel,et al. Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light , 2013, Nature Methods.
[60] A. Hyman,et al. A recombineering pipeline for functional genomics applied to Caenorhabditis elegans , 2006, Nature Methods.
[61] Matthew M. Crane,et al. A toolkit for DNA assembly, genome engineering and multicolor imaging for C. elegans. , 2018, Translational medicine of aging.
[62] Mason Klein,et al. Pan-neuronal imaging in roaming Caenorhabditis elegans , 2015, Proceedings of the National Academy of Sciences.
[63] Elizabeth Casey,et al. Creation of low-copy integrated transgenic lines in Caenorhabditis elegans. , 2001, Genetics.
[64] Zhirong Bao,et al. Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis , 2013, Development.
[65] Aravinthan D. T. Samuel,et al. Laser microsurgery in Caenorhabditis elegans. , 2012, Methods in cell biology.
[66] Erik E. Griffin,et al. Regulation of the MEX-5 Gradient by a Spatially Segregated Kinase/Phosphatase Cycle , 2011, Cell.
[67] sprotocols. Automated Lineage and Expression Profiling in Live Caenorhabditis elegans Embryos , 2014 .
[68] Marjeta Urh,et al. HaloTag: a novel protein labeling technology for cell imaging and protein analysis. , 2008, ACS chemical biology.
[69] J. Auwerx,et al. Reversible and long-term immobilization in a hydrogel-microbead matrix for high-resolution imaging of Caenorhabditis elegans and other small organisms , 2018, PloS one.
[70] R. Singer,et al. Localization of ASH1 mRNA particles in living yeast. , 1998, Molecular cell.
[71] Andrew D. Chisholm,et al. Highly efficient optogenetic cell ablation in C. elegans using membrane-targeted miniSOG , 2016, Scientific Reports.
[72] Wei Li,et al. Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development , 2012, Nature Protocols.
[73] J. Sulston,et al. The embryonic cell lineage of the nematode Caenorhabditis elegans. , 1983, Developmental biology.
[74] K. Oegema,et al. A toolkit for GFP-mediated tissue-specific protein degradation in C. elegans , 2017, Development.
[75] Justin Senseney,et al. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy , 2013, Nature Biotechnology.
[76] Joshua W. Shaevitz,et al. Automatically tracking neurons in a moving and deforming brain , 2016, PLoS Comput. Biol..
[77] A. Kimura,et al. Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans , 2017, Scientific Reports.
[78] Anthony Santella,et al. An In Toto Approach to Dissecting Cellular Interactions in Complex Tissues. , 2017, Developmental cell.
[79] Tracking Single C. elegans Using a USB Microscope on a Motorized Stage. , 2014, Methods in molecular biology.
[80] O. Hobert,et al. A Caenorhabditis elegans Zinc Finger Transcription Factor, ztf-6, Required for the Specification of a Dopamine Neuron-Producing Lineage , 2018, G3: Genes, Genomes, Genetics.
[81] M. Davis,et al. Improved Mos1-mediated transgenesis in C. elegans , 2012, Nature Methods.
[82] T. Schedl,et al. Translation repression by GLD-1 protects its mRNA targets from nonsense-mediated mRNA decay in C. elegans. , 2004, Genes & development.
[83] Eugene W. Myers,et al. Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans , 2009, Cell.
[84] S. Grill,et al. Anisotropies in cortical tension reveal the physical basis of polarizing cortical flows , 2010, Nature.
[85] E. Levine,et al. Durable spatiotemporal surveillance of Caenorhabditis elegans response to environmental cues. , 2014, Lab on a chip.
[86] Scott A. Rifkin,et al. Imaging individual mRNA molecules using multiple singly labeled probes , 2008, Nature Methods.
[87] M. Chalfie,et al. Green fluorescent protein as a marker for gene expression. , 1994, Science.
[88] Q. Yao,et al. Small RNA in situ hybridization in Caenorhabditis elegans, combined with RNA-seq, identifies germline-enriched microRNAs☆ , 2016, Developmental biology.
[89] J. V. van Zon,et al. Long-term time-lapse microscopy of C. elegans post-embryonic development , 2016, Nature Communications.
[90] V. Robert,et al. Targeted engineering of the Caenorhabditis elegans genome following Mos1‐triggered chromosomal breaks , 2007, The EMBO journal.
[91] A. Ponti,et al. The spatial dynamics of tissue-specific promoters during C. elegans development. , 2010, Genes & development.
[92] Avelino Javer,et al. An open-source platform for analyzing and sharing worm-behavior data , 2018, Nature Methods.
[93] Shai Shaham,et al. Long-Term High-Resolution Imaging of Developing C. elegans Larvae with Microfluidics. , 2017, Developmental cell.
[94] Stephan Preibisch,et al. Efficient Bayesian-based multiview deconvolution , 2013, Nature Methods.
[95] Theodore H. Lindsay,et al. Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans , 2015, Cell.
[96] Travis A. Jarrell,et al. The Connectome of a Decision-Making Neural Network , 2012, Science.
[97] O. Hobert,et al. An atlas of Caenorhabditis elegans chemoreceptor expression , 2017, bioRxiv.
[98] Thomas J. Nicholas,et al. Automated analysis of embryonic gene expression with cellular resolution in C. elegans , 2008, Nature Methods.
[99] Christopher Fang-Yen,et al. Longitudinal imaging of Caenorhabditis elegans in a microfabricated device reveals variation in behavioral decline during aging , 2017, eLife.
[100] Morris F. Maduro,et al. In situ hybridization of embryos with antisense RNA probes. , 2011, Methods in cell biology.
[101] Anthony Santella,et al. Actomyosin-based Self-organization of cell internalization during C. elegans gastrulation , 2012, BMC Biology.
[102] Matthew M. Crane,et al. Real-time multimodal optical control of neurons and muscles in freely-behaving Caenorhabditis elegans , 2011, Nature Methods.
[103] M. Zhen,et al. The C. elegans COE transcription factor UNC-3 activates lineage-specific apoptosis and affects neurite growth in the RID lineage , 2015, Development.
[104] A. van Oudenaarden,et al. Spatial Transcriptomics of C. elegans Males and Hermaphrodites Identifies Sex-Specific Differences in Gene Expression Patterns. , 2018, Developmental cell.
[105] A. Hyman,et al. PAR proteins diffuse freely across the anterior–posterior boundary in polarized C. elegans embryos , 2011, The Journal of cell biology.
[106] Joshua W Shaevitz,et al. Whole-brain calcium imaging with cellular resolution in freely behaving Caenorhabditis elegans , 2015, Proceedings of the National Academy of Sciences.
[107] R. Schnabel,et al. Oriented Cell Division in the C. elegans Embryo Is Coordinated by G-Protein Signaling Dependent on the Adhesion GPCR LAT-1 , 2015, PLoS genetics.
[108] William E Pittman,et al. A simple culture system for long-term imaging of individual C. elegans. , 2017, Lab on a chip.
[109] Nektarios Tavernarakis,et al. Nemo: a computational tool for analyzing nematode locomotion , 2007, BMC Neuroscience.
[110] J. Labbé,et al. Live imaging for studying asymmetric cell division in the C. elegans embryo. , 2012, Methods in molecular biology.
[111] Annika L A Nichols,et al. A global brain state underlies C. elegans sleep behavior , 2017, Science.
[112] Cori Bargmann,et al. Microfluidics for in vivo imaging of neuronal and behavioral activity in Caenorhabditis elegans , 2007, Nature Methods.
[113] J. Auwerx,et al. An automated microfluidic platform for C. elegans embryo arraying, phenotyping, and long-term live imaging , 2015, Scientific Reports.
[114] Sean X. Sun,et al. MEX-5 enrichment in the C. elegans early embryo mediated by differential diffusion , 2010, Development.
[115] H. Bringmann,et al. Agarose hydrogel microcompartments for imaging sleep- and wake-like behavior and nervous system development in Caenorhabditis elegans larvae , 2011, Journal of Neuroscience Methods.
[116] Stefan R. Pulver,et al. Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.
[117] Eugene W. Myers,et al. Active Graph Matching for Automatic Joint Segmentation and Annotation of C. elegans , 2014, MICCAI.
[118] Stephan Preibisch,et al. BigStitcher: Reconstructing high-resolution image datasets of cleared and expanded samples , 2018 .
[119] Oliver Hobert,et al. A Toolkit and Robust Pipeline for the Generation of Fosmid-Based Reporter Genes in C. elegans , 2009, PloS one.
[120] E. Bamberg,et al. Light Activation of Channelrhodopsin-2 in Excitable Cells of Caenorhabditis elegans Triggers Rapid Behavioral Responses , 2005, Current Biology.
[121] Nimit Jain,et al. An abundant class of non-coding DNA can prevent stochastic gene silencing in the C. elegans germline , 2016, Cell.
[122] V. Ambros,et al. Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences. , 1991, The EMBO journal.
[123] Protein Synthesis Rate Assessment by Fluorescence Recovery after Photobleaching (FRAP). , 2017, Bio-protocol.
[124] E. Meijering,et al. Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis. , 2015, Developmental biology.
[125] Martin Chalfie,et al. Green fluorescent protein as a marker for gene expression , 1994 .
[126] Scott Kennedy,et al. A Multiplexed DNA FISH strategy for Assessing Genome Architecture in C. elegans , 2018, bioRxiv.
[127] A. Dernburg,et al. Superresolution microscopy reveals the three-dimensional organization of meiotic chromosome axes in intact Caenorhabditis elegans tissue , 2017, Proceedings of the National Academy of Sciences.
[128] T. Boulin,et al. Reliable CRISPR/Cas9 Genome Engineering in Caenorhabditis elegans Using a Single Efficient sgRNA and an Easily Recognizable Phenotype , 2017, G3: Genes, Genomes, Genetics.
[129] Michael Z. Lin,et al. Improving FRET Dynamic Range with Bright Green and Red Fluorescent Proteins , 2013 .
[130] F. Del Bene,et al. Optical Sectioning Deep Inside Live Embryos by Selective Plane Illumination Microscopy , 2004, Science.
[131] J. Ahringer,et al. Comparative assessment of fluorescent proteins for in vivo imaging in an animal model system , 2016, bioRxiv.
[132] Sharad Ramanathan,et al. Optical interrogation of neural circuits in Caenorhabditis elegans , 2009, Nature Methods.
[133] S. Lacadie,et al. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells , 2018, Developmental cell.
[134] Shai Shaham,et al. FBN-1, a fibrillin-related protein, is required for resistance of the epidermis to mechanical deformation during C. elegans embryogenesis , 2015, eLife.
[135] Steven W. Flavell,et al. Feedback from Network States Generates Variability in a Probabilistic Olfactory Circuit , 2015, Cell.
[136] R. Brent,et al. Single Cell Quantification of Reporter Gene Expression in Live Adult Caenorhabditis elegans Reveals Reproducible Cell-Specific Expression Patterns and Underlying Biological Variation , 2015, PloS one.
[137] Salah Ayoub,et al. Spatiotemporal m(i)RNA Architecture and 3' UTR Regulation in the C. elegans Germline. , 2018, Developmental cell.
[138] S. Lockery,et al. Chemosensory behavior of semi-restrained Caenorhabditis elegans. , 2005, Journal of neurobiology.
[139] Anthony Santella,et al. Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model , 2015, Nucleic Acids Res..
[140] Alexander van Oudenaarden,et al. Single molecule fluorescent in situ hybridization (smFISH) of C. elegans worms and embryos. , 2012, WormBook : the online review of C. elegans biology.
[141] Steven J. M. Jones,et al. High-Throughput In Vivo Analysis of Gene Expression in Caenorhabditis elegans , 2007, PLoS biology.
[142] R. Waterston,et al. Automated cell lineage tracing in Caenorhabditis elegans. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[143] Stephan Saalfeld,et al. Globally optimal stitching of tiled 3D microscopic image acquisitions , 2009, Bioinform..
[144] Ashley N. Linder,et al. Predicting natural behavior from whole-brain neural dynamics , 2018, bioRxiv.
[145] T. Zimmermann,et al. Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development. , 2016, Cell systems.