Single-molecule imaging of cytoplasmic dynein in vivo.

While early fluorescence microscopy experiments employing fluorescent probes afforded snapshots of the cell, the power of live-cell microscopy is required to understand complex dynamics in biological processes. The first successful cloning of green fluorescent protein in the 1990s paved the way for development of approaches that we now utilize for visualization in a living cell. In this chapter, we discuss a technique to observe fluorescently tagged single molecules in fission yeast. With a few simple modifications to the established total internal reflection fluorescence microscopy, cytoplasmic dynein molecules in the cytoplasm and on the microtubules can be visualized and their intracellular dynamics can be studied. We illustrate a technique to study motor behavior, which is not apparent in conventional ensemble studies of motors. In general, this technique can be employed to study single-molecule dynamics of fluorescently tagged proteins in the cell interior.

[1]  J. Sellers,et al.  Myosins: a diverse superfamily. , 2000, Biochimica et biophysica acta.

[2]  D. Axelrod Cell-substrate contacts illuminated by total internal reflection fluorescence , 1981, The Journal of cell biology.

[3]  L. Goldstein,et al.  Bead movement by single kinesin molecules studied with optical tweezers , 1990, Nature.

[4]  I. Tolic-Nørrelykke,et al.  Self-Organization of Dynein Motors Generates Meiotic Nuclear Oscillations , 2009, PLoS biology.

[5]  A Kusumi,et al.  Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface. , 2001, Biophysical journal.

[6]  Ronald D Vale,et al.  The Molecular Motor Toolbox for Intracellular Transport , 2003, Cell.

[7]  N. Rhind,et al.  Basic methods for fission yeast , 2006, Yeast.

[8]  M. Tokunaga,et al.  Highly inclined thin illumination enables clear single-molecule imaging in cells , 2008, Nature Methods.

[9]  Nico Stuurman,et al.  Imaging single molecules using total internal reflection fluorescence microscopy (TIRFM). , 2010, Cold Spring Harbor protocols.

[10]  Masayuki Yamamoto,et al.  Fission Yeast Num1p Is a Cortical Factor Anchoring Dynein and Is Essential for the Horse-Tail Nuclear Movement During Meiotic Prophase , 2006, Genetics.

[11]  K. Jaqaman,et al.  Robust single particle tracking in live cell time-lapse sequences , 2008, Nature Methods.

[12]  M. Dron,et al.  Priming affects the activity of a specific region of the promoter of the human beta interferon gene , 1990, Molecular and cellular biology.

[13]  Ronald D. Vale,et al.  Regulators of the cytoplasmic dynein motor , 2009, Nature Reviews Molecular Cell Biology.

[14]  Samara L. Reck-Peterson,et al.  Single-Molecule Analysis of Dynein Processivity and Stepping Behavior , 2006, Cell.

[15]  Y. Hiraoka,et al.  Dynamic behavior of microtubules during dynein-dependent nuclear migrations of meiotic prophase in fission yeast. , 2001, Molecular biology of the cell.

[16]  Samara L. Reck-Peterson,et al.  Probing the force generation and stepping behavior of cytoplasmic Dynein. , 2011, Methods in molecular biology.

[17]  Michael P. Sheetz,et al.  Organelle, bead, and microtubule translocations promoted by soluble factors from the squid giant axon , 1985, Cell.

[18]  J. McIntosh,et al.  A Cytoplasmic Dynein Heavy Chain Is Required for Oscillatory Nuclear Movement of Meiotic Prophase and Efficient Meiotic Recombination in Fission Yeast , 1999, The Journal of cell biology.

[19]  H. Nojima,et al.  Mcp5, a meiotic cell cortex protein, is required for nuclear movement mediated by dynein and microtubules in fission yeast , 2006, The Journal of cell biology.

[20]  B. Nitzsche,et al.  Fluorescence imaging of single Kinesin motors on immobilized microtubules. , 2011, Methods in molecular biology.

[21]  Christoph F. Schmidt,et al.  Direct observation of kinesin stepping by optical trapping interferometry , 1993, Nature.

[22]  M. Sheetz,et al.  Force of single kinesin molecules measured with optical tweezers. , 1993, Science.

[23]  E. Isacoff,et al.  Subunit counting in membrane-bound proteins , 2007, Nature Methods.

[24]  Toshio Yanagida,et al.  Direct observation of single kinesin molecules moving along microtubules , 1996, Nature.

[25]  I. Tolic-Nørrelykke,et al.  Single-molecule imaging in vivo: the dancing building blocks of the cell. , 2013, Integrative biology : quantitative biosciences from nano to macro.

[26]  I. Tolic-Nørrelykke,et al.  A divide and conquer strategy for the maximum likelihood localization of low intensity objects. , 2014, Optics express.

[27]  I. Tolic-Nørrelykke,et al.  Dynein Motion Switches from Diffusive to Directed upon Cortical Anchoring , 2013, Cell.

[28]  Liedewij Laan,et al.  Assembly dynamics of microtubules at molecular resolution , 2006, Nature.