Autoregressive Models for Capture‐Recapture Data: A Bayesian Approach

In this article, we incorporate an autoregressive time-series framework into models for animal survival using capture-recapture data. Researchers modeling animal survival probabilities as the realization of a random process have typically considered survival to be independent from one time period to the next. This may not be realistic for some populations. Using a Gibbs sampling approach, we can estimate covariate coefficients and autoregressive parameters for survival models. The procedure is illustrated with a waterfowl band recovery dataset for northern pintails (Anas acuta). The analysis shows that the second lag autoregressive coefficient is significantly less than 0, suggesting that there is a triennial relationship between survival probabilities and emphasizing that modeling survival rates as independent random variables may be unrealistic in some cases. Software to implement the methodology is available at no charge on the Internet.

[1]  Xiao-Li Meng,et al.  Modeling covariance matrices in terms of standard deviations and correlations, with application to shrinkage , 2000 .

[2]  S. T. Buckland,et al.  Wildlife Population Assessment: Past Developments and Future Directions , 2000, Biometrics.

[3]  P. McCullagh,et al.  Generalized Linear Models , 1992 .

[4]  Byron J. T. Morgan,et al.  Bayesian methods for analysing ringing data , 2002 .

[5]  Aki Vehtari Discussion to "Bayesian measures of model complexity and fit" by Spiegelhalter, D.J., Best, N.G., Carlin, B.P., and van der Linde, A. , 2002 .

[6]  Penelope Vounatsou,et al.  Bayesian Analysis of Ring-Recovery Data Via Markov Chain Monte Carlo Simulation , 1995 .

[7]  R King,et al.  Model Selection for Integrated Recovery/Recapture Data , 2002, Biometrics.

[8]  M. Karim Generalized Linear Models With Random Effects , 1991 .

[9]  David J. Spiegelhalter,et al.  WinBUGS user manual version 1.4 , 2003 .

[10]  Christian P. Robert,et al.  Monte Carlo Statistical Methods , 2005, Springer Texts in Statistics.

[11]  David R. Anderson,et al.  Statistical Inference from Band Recovery Data: A Handbook , 1978 .

[12]  Matthew West,et al.  Priors and component structures in autoregressive time series models , 1999 .

[13]  David R. Anderson,et al.  Estimation of long-term trends and variation in avian survival probabilities using random effects models , 2002 .

[14]  M. Wells Generalized Linear Models: A Bayesian Perspective , 2001 .

[15]  P. McCullagh,et al.  Monograph on Statistics and Applied Probability , 1989 .

[16]  Richard A. Davis,et al.  Introduction to time series and forecasting , 1998 .

[17]  P. McCullagh Quasi-Likelihood Functions , 1983 .

[18]  J. Lindsey Models for Repeated Measurements , 1993 .

[19]  Bradley P. Carlin,et al.  Bayesian measures of model complexity and fit , 2002 .

[20]  Ruth King,et al.  Bayesian model discrimination for multiple strata capture‐recapture data , 2002 .

[21]  Byron J. T. Morgan,et al.  Bayesian Animal Survival Estimation , 2000 .

[22]  P. Green Reversible jump Markov chain Monte Carlo computation and Bayesian model determination , 1995 .

[23]  Dongchu Sun,et al.  Reference priors with partial information , 1998 .

[24]  K. Burnham,et al.  Program MARK: survival estimation from populations of marked animals , 1999 .

[25]  Andrew Harvey,et al.  Time Series Models. , 1983 .

[26]  Kenneth P. Burnham,et al.  Evaluation of some random effects methodology applicable to bird ringing data , 2002 .

[27]  S P Brooks,et al.  On the Bayesian Analysis of Ring‐Recovery Data , 2000, Biometrics.

[28]  J. Zeh,et al.  Estimation of Adult Bowhead Whale Survival , 1996 .

[29]  R. Cormack Estimates of survival from the sighting of marked animals , 1964 .

[30]  David R. Anderson,et al.  Modeling Survival and Testing Biological Hypotheses Using Marked Animals: A Unified Approach with Case Studies , 1992 .

[31]  B J T Morgan,et al.  The Analysis of Ring‐Recovery Data Using Random Effects , 2003, Biometrics.