Fast events in protein folding.

Understanding how proteins fold is one of the central problems in biochemistry. A new generation of kinetic experiments has emerged to investigate the mechanisms of protein folding on the previously inaccessible submillisecond time scale. These experiments provide the first glimpse of processes such as secondary structure formation, local hydrophobic collapse, global collapse to compact denatured states, and fast barrier crossings to the native state. Key results are summarized and discussed in terms of the statistical energy landscape theory of protein folding.

[1]  T. Oas,et al.  Submillisecond folding of monomeric lambda repressor. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[2]  P. Wolynes,et al.  Intermediates and barrier crossing in a random energy model , 1989 .

[3]  Matthews Cr PATHWAYS OF PROTEIN FOLDING , 1993 .

[4]  The Nonergodic (“Spin-Glass–Like”) Phase of Heteropolymer with Quenched Disordered Sequence of Links , 1989 .

[5]  W. A. Eaton,et al.  Optical Triggers of Protein Folding , 1996, Science.

[6]  G. Lorimer,et al.  A quantitative assessment of the role of the chaperonin proteins in protein folding in vivo , 1996, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[7]  C. M. Jones,et al.  Fast events in protein folding initiated by nanosecond laser photolysis. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[8]  W. Eaton,et al.  GEMINATE REBINDING AND CONFORMATIONAL DYNAMICS OF MYOGLOBIN EMBEDDED IN A GLASS AT ROOM TEMPERATURE , 1996 .

[9]  M. Gruebele,et al.  Direct observation of fast protein folding: the initial collapse of apomyoglobin. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[10]  G. Schwarz,et al.  Kinetics of the helix-coil transition of a polypeptide with non-ionic side groups, derived from ultrasonic relaxation measurements. , 1979, Biophysical chemistry.

[11]  T. Sosnick,et al.  Molecular collapse: The rate‐limiting step in two‐state cytochrome c folding , 1996, Proteins.

[12]  Peggy A. Thompson,et al.  Laser temperature jump for the study of early events in protein folding , 1997 .

[13]  O. Ptitsyn,et al.  Molten globule and protein folding. , 1995, Advances in protein chemistry.

[14]  P S Kim,et al.  Internal stark effect measurement of the electric field at the amino terminus of an alpha helix. , 1992, Science.

[15]  H. Gray,et al.  Protein Folding Triggered by Electron Transfer , 1996, Science.

[16]  D. Yee,et al.  Principles of protein folding — A perspective from simple exact models , 1995, Protein science : a publication of the Protein Society.

[17]  P E Wright,et al.  Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin. , 1993, Science.

[18]  A Caflisch,et al.  Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[19]  J. Onuchic,et al.  Fast-folding experiments and the topography of protein folding energy landscapes. , 1996, Chemistry & biology.

[20]  T. Sosnick,et al.  The barriers in protein folding , 1994, Nature Structural Biology.

[21]  D. Thirumalai,et al.  Kinetics of Folding of Proteins and RNA , 1996 .

[22]  A. Fersht,et al.  The structure of the transition state for folding of chymotrypsin inhibitor 2 analysed by protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. , 1995, Journal of molecular biology.

[23]  D. Thirumalai,et al.  Kinetics of protein folding: Nucleation mechanism, time scales, and pathways , 1995 .

[24]  P. S. Kim,et al.  Intermediates in the folding reactions of small proteins. , 1990, Annual review of biochemistry.

[25]  J. Onuchic,et al.  Protein folding funnels: the nature of the transition state ensemble. , 1996, Folding & design.

[26]  J. Onuchic,et al.  Funnels, pathways, and the energy landscape of protein folding: A synthesis , 1994, Proteins.

[27]  H. Orland,et al.  Mean-Field Model for Protein Folding , 1988 .

[28]  R. Hochstrasser,et al.  Spectroscopic studies of oxy- and carbonmonoxyhemoglobin after pulsed optical excitation. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[29]  J. Hofrichter,et al.  Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[30]  Mixing liquids in microseconds , 1985 .

[31]  A. Fersht,et al.  Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition. , 1991, Biochemistry.

[32]  P. Wolynes,et al.  The energy landscapes and motions of proteins. , 1991, Science.

[33]  D. Brems,et al.  Manipulation of the observed kinetic phases in the refolding of denatured ferricytochromes c. , 1983, The Journal of biological chemistry.

[34]  A. Fersht,et al.  The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding. , 1992, Journal of molecular biology.

[35]  D. Rousseau,et al.  Microsecond Generation of Oxygen-bound Cytochrome c Oxidase by Rapid Solution Mixing (*) , 1995, The Journal of Biological Chemistry.

[36]  H. Gray,et al.  Cytochrome c folding triggered by electron transfer. , 1996, Chemistry & biology.

[37]  C. Anfinsen Principles that govern the folding of protein chains. , 1973, Science.

[38]  R. Clegg,et al.  Diffusion-controlled association of a dye, 1-anilinonaphthalene-8-sulfonic acid, to a protein, bovine serum albumin, using a fast-flow microsecond mixer and stopped-flow. , 1987, Biophysical chemistry.

[39]  R. Jaenicke,et al.  Folding and association of proteins. , 1982, Biophysics of structure and mechanism.

[40]  T. Kiefhaber,et al.  Kinetic traps in lysozyme folding. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[41]  A. Bhuyan,et al.  Kinetic mechanism of cytochrome c folding: involvement of the heme and its ligands. , 1994, Biochemistry.

[42]  F M Poulsen,et al.  Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family. , 1996, Journal of molecular biology.

[43]  D Thirumalai,et al.  Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[44]  R. Hochstrasser,et al.  Ultrafast thermally induced unfolding of RNase A. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[45]  A. Fersht,et al.  Submillisecond events in protein folding. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[46]  R. Dyer,et al.  Fast events in protein folding: helix melting and formation in a small peptide. , 1996, Biochemistry.

[47]  M Levitt,et al.  A model of the molten globule state from molecular dynamics simulations. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[48]  P. Privalov,et al.  Energetics of protein structure. , 1995, Advances in protein chemistry.

[49]  L A Mirny,et al.  Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model. , 1996, Folding & design.

[50]  M Karplus,et al.  Theoretical studies of protein folding and unfolding. , 1995, Current opinion in structural biology.

[51]  P. Wolynes,et al.  Spin glasses and the statistical mechanics of protein folding. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[52]  F. Schmid,et al.  Prolyl isomerase: enzymatic catalysis of slow protein-folding reactions. , 1993, Annual review of biophysics and biomolecular structure.