Signal and noise characteristics of Hahn SE and GE BOLD fMRI at 7 T in humans

At very high magnetic fields, GE BOLD fMRI is expected to contain nonspecific contributions and behave differently than HSE fMRI data. Similarly, the two approaches can conceivably suffer from different contributions to temporal instabilities in a times series that ultimately determine the contrast-to-noise ratio (CNR). We investigate the signal and signal fluctuation characteristics in GE and HSE fMRI data with the imaging parameters separately optimized for each contrast at 7 T. In HSE fMRI, activation-induced fractional signal change (DeltaS/S) decreased rapidly, and the ratio of standard deviations of image-to-image fluctuations due to physiological processes (sigmaPhys) to thermal noise (sigmaTherm) remained constant with increasing voxel volume. In contrast, DeltaS/S as well as volume of activated voxels was virtually independent of voxel size for GE BOLD, and sigma(Phys)/sigmaTherm increased with increasing voxel size. The ratio of BOLD signal changes (GE/HSE) was much closer to 1 in tissue areas compared to vessel areas. These observations led to the conclusions that the spatial extent of the activation-induced DeltaS/S was much broader in the GE data, and that the physiological processes that give rise to the temporal fluctuations lost coherence over millimeter distances in HSE compared to GE fMRI data. While further studies are needed to characterize it fully, sigmaPhys in HSE data was clearly different than in GE data. It was concluded that HSE imaging yields a significantly reduced amount of nonspecific signals compared to GE imaging, and, would be the method of choice (over GE) for high-resolution applications in humans.

[1]  X Golay,et al.  Comparison of the dependence of blood R2 and R  2* on oxygen saturation at 1.5 and 4.7 Tesla , 2003, Magnetic resonance in medicine.

[2]  S. Ogawa,et al.  Oxygenation‐sensitive contrast in magnetic resonance image of rodent brain at high magnetic fields , 1990, Magnetic resonance in medicine.

[3]  S. Ogawa,et al.  BOLD Based Functional MRI at 4 Tesla Includes a Capillary Bed Contribution: Echo‐Planar Imaging Correlates with Previous Optical Imaging Using Intrinsic Signals , 1995, Magnetic resonance in medicine.

[4]  Dae-Shik Kim,et al.  Spatial relationship between neuronal activity and BOLD functional MRI , 2004, NeuroImage.

[5]  Lothar R. Schad,et al.  High-resolution venography of the brain using magnetic resonance imaging , 1998, Magnetic Resonance Materials in Physics, Biology and Medicine.

[6]  Ravi S. Menon,et al.  Intrinsic signal changes accompanying sensory stimulation: functional brain mapping with magnetic resonance imaging. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[7]  E. Haacke,et al.  Identification of vascular structures as a major source of signal contrast in high resolution 2D and 3D functional activation imaging of the motor cortex at l.5T preliminary results , 1993, Magnetic resonance in medicine.

[8]  Dae-Shik Kim,et al.  High-resolution mapping of iso-orientation columns by fMRI , 2000, Nature Neuroscience.

[9]  R Gruetter,et al.  Field mapping without reference scan using asymmetric echo‐planar techniques , 2000, Magnetic resonance in medicine.

[10]  B. Biswal,et al.  High‐resolution fMRI using multislice partial k‐space GR‐EPI with cubic voxels , 2001, Magnetic resonance in medicine.

[11]  X. Hu,et al.  Evaluation of the early response in fMRI in individual subjects using short stimulus duration , 1997, Magnetic resonance in medicine.

[12]  J. R. Baker,et al.  The intravascular contribution to fmri signal change: monte carlo modeling and diffusion‐weighted studies in vivo , 1995, Magnetic resonance in medicine.

[13]  A. Toga,et al.  Temporal spatial differences observed by functional MRI and human intraoperative optical imaging , 2001, NeuroImage.

[14]  P. Stroman,et al.  Spin-echo versus gradient-echo fMRI with short echo times. , 2001, Magnetic resonance imaging.

[15]  E. Haacke,et al.  High‐resolution BOLD venographic imaging: a window into brain function , 2001, NMR in biomedicine.

[16]  J. Pekar,et al.  Functional magnetic resonance imaging based on changes in vascular space occupancy , 2003, Magnetic resonance in medicine.

[17]  K. Uğurbil,et al.  Microvascular BOLD contribution at 4 and 7 T in the human brain: Gradient‐echo and spin‐echo fMRI with suppression of blood effects , 2003, Magnetic resonance in medicine.

[18]  D. Tank,et al.  4 Tesla gradient recalled echo characteristics of photic stimulation‐induced signal changes in the human primary visual cortex , 1993 .

[19]  E M Haacke,et al.  Predicting BOLD signal changes as a function of blood volume fraction and resolution , 2001, NMR in biomedicine.

[20]  P. Dechent,et al.  Direct mapping of ocular dominance columns in human primary visual cortex , 2000, Neuroreport.

[21]  A. Kleinschmidt,et al.  Brain or veinoxygenation or flow? On signal physiology in functional MRI of human brain activation , 1994, NMR in biomedicine.

[22]  R. Turner,et al.  Dynamic magnetic resonance imaging of human brain activity during primary sensory stimulation. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[23]  Essa Yacoub,et al.  Zoomed Functional Imaging in the Human Brain at 7 Tesla with Simultaneous High Spatial and High Temporal Resolution , 2002, NeuroImage.

[24]  A. Shmuel,et al.  Imaging brain function in humans at 7 Tesla , 2001, Magnetic resonance in medicine.

[25]  K. Uğurbil,et al.  Ultrahigh field magnetic resonance imaging and spectroscopy. , 2003, Magnetic resonance imaging.

[26]  Ravi S. Menon Postacquisition suppression of large‐vessel BOLD signals in high‐resolution fMRI , 2002, Magnetic resonance in medicine.

[27]  Toralf Mildner,et al.  An Investigation of the Value of Spin-Echo-Based fMRI Using a Stroop Color–Word Matching Task and EPI at 3 T , 2002, NeuroImage.

[28]  P. Stroman,et al.  Extravascular proton‐density changes as a non‐BOLD component of contrast in fMRI of the human spinal cord , 2002, Magnetic resonance in medicine.

[29]  G. Glover,et al.  Physiological noise in oxygenation‐sensitive magnetic resonance imaging , 2001, Magnetic resonance in medicine.

[30]  Essa Yacoub,et al.  Spatial specificity of high‐resolution, spin‐echo BOLD, and CBF fMRI at 7 T , 2004 .

[31]  Ravi S. Menon,et al.  Brief visual stimulation allows mapping of ocular dominance in visual cortex using fMRI , 2001, Human brain mapping.

[32]  R. Kauppinen,et al.  Venous blood effects in spin‐echo fMRI of human brain , 1999, Magnetic resonance in medicine.

[33]  S G Kim,et al.  Magnetic resonance studies of brain function and neurochemistry. , 2000, Annual review of biomedical engineering.

[34]  Yu-Chung N. Cheng,et al.  Magnetic Resonance Imaging: Physical Principles and Sequence Design , 1999 .

[35]  G. Glover,et al.  Neuroimaging at 1.5 T and 3.0 T: Comparison of oxygenation‐sensitive magnetic resonance imaging , 2001, Magnetic resonance in medicine.

[36]  Jens Frahm,et al.  On the Effects of Spatial Filtering—A Comparative fMRI Study of Episodic Memory Encoding at High and Low Resolution , 2002, NeuroImage.

[37]  R. S. Hinks,et al.  Spin‐echo and gradient‐echo epi of human brain activation using bold contrast: A comparative study at 1.5 T , 1994, NMR in biomedicine.

[38]  G. Glover,et al.  Retinotopic organization in human visual cortex and the spatial precision of functional MRI. , 1997, Cerebral cortex.

[39]  A L Benabid,et al.  Functional MRI of the human brain: predominance of signals from extracerebral veins. , 1994, Neuroreport.

[40]  Dae-Shik Kim,et al.  Spatiotemporal dynamics of the BOLD fMRI signals: Toward mapping submillimeter cortical columns using the early negative response , 2000, Magnetic resonance in medicine.

[41]  Jean A. Tkach,et al.  2D and 3D high resolution gradient echo functional imaging of the brain: Venous contributions to signal in motor cortex studies , 1994, NMR in biomedicine.

[42]  D. Tank,et al.  Brain magnetic resonance imaging with contrast dependent on blood oxygenation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[43]  J H Duyn,et al.  Inflow versus deoxyhemoglobin effects in bold functional MRI using gradient echoes at 1.5 T , 1994, NMR in biomedicine.

[44]  J. Voyvodic,et al.  High‐resolution echo‐planar fMRI of human visual cortex at 3.0 tesla , 1997, NMR in biomedicine.

[45]  Xiaoping Hu,et al.  Potential pitfalls of functional MRI using conventional gradient‐recalled echo techniques , 1994, NMR in biomedicine.

[46]  K. Uğurbil,et al.  Spin‐echo fMRI in humans using high spatial resolutions and high magnetic fields , 2003, Magnetic resonance in medicine.

[47]  Keiji Tanaka,et al.  Human Ocular Dominance Columns as Revealed by High-Field Functional Magnetic Resonance Imaging , 2001, Neuron.

[48]  K. Uğurbil,et al.  High‐resolution, spin‐echo BOLD, and CBF fMRI at 4 and 7 T , 2002, Magnetic resonance in medicine.

[49]  G. Radda,et al.  Oxygenation dependence of the transverse relaxation time of water protons in whole blood at high field. , 1982, Biochimica et biophysica acta.

[50]  J. Frahm,et al.  Functional MRI of human brain activation at high spatial resolution , 1993, Magnetic resonance in medicine.

[51]  X. Hu,et al.  Reduction of signal fluctuation in functional MRI using navigator echoes , 1994, Magnetic resonance in medicine.

[52]  G. Glover,et al.  Correction of physiologically induced global off‐resonance effects in dynamic echo‐planar and spiral functional imaging , 2002, Magnetic resonance in medicine.

[53]  Karl J. Friston,et al.  Analysis of functional MRI time‐series , 1994, Human Brain Mapping.

[54]  S. Ogawa,et al.  Magnetic resonance imaging of blood vessels at high fields: In vivo and in vitro measurements and image simulation , 1990, Magnetic resonance in medicine.

[55]  Adrian T. Lee,et al.  Discrimination of Large Venous Vessels in Time‐Course Spiral Blood‐Oxygen‐Level‐Dependent Magnetic‐Resonance Functional Neuroimaging , 1995, Magnetic resonance in medicine.

[56]  Ravi S. Menon,et al.  Ocular dominance in human V1 demonstrated by functional magnetic resonance imaging. , 1997, Journal of neurophysiology.

[57]  R M Weisskoff,et al.  Simple measurement of scanner stability for functional NMR imaging of activation in the brain , 1996, Magnetic resonance in medicine.

[58]  J. Strupp Stimulate: A GUI based fMRI analysis software package , 1996, NeuroImage.

[59]  Essa Yacoub,et al.  Further evaluation of the initial negative response in functional magnetic resonance imaging , 1999, Magnetic resonance in medicine.

[60]  N Fujita,et al.  Extravascular contribution of blood oxygenation level‐dependent signal changes: A numerical analysis based on a vascular network model , 2001, Magnetic resonance in medicine.

[61]  G. Pawlik,et al.  Quantitative capillary topography and blood flow in the cerebral cortex of cats: an in vivo microscopic study , 1981, Brain Research.

[62]  K. Uğurbil,et al.  Point spread function for gradient echo and spin echo BOLD fMRI at 7 Tesla , 2004 .

[63]  A. Song,et al.  Diffusion weighted fMRI at 1.5 T , 1996, Magnetic resonance in medicine.

[64]  L. Toth,et al.  How accurate is magnetic resonance imaging of brain function? , 2003, Trends in Neurosciences.

[65]  E C Wong,et al.  Processing strategies for time‐course data sets in functional mri of the human brain , 1993, Magnetic resonance in medicine.

[66]  P. Bandettini,et al.  Single‐shot half k‐space high‐resolution gradient‐recalled EPI for fMRI at 3 tesla , 1998, Magnetic resonance in medicine.

[67]  Ravi S. Menon,et al.  Functional brain mapping by blood oxygenation level-dependent contrast magnetic resonance imaging. A comparison of signal characteristics with a biophysical model. , 1993, Biophysical journal.

[68]  B R Rosen,et al.  Mr contrast due to intravascular magnetic susceptibility perturbations , 1995, Magnetic resonance in medicine.